AT1G68350

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015368
Physical Location & Seq
Forward (+)
25616405 .. 25617265
861 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G68350.1

Sequence Viewer

Length: 489 bp
ATGTCCCAAAGAAGAAGACCAATTTTCCAAAGAGTTTCGAAACTACTAAAAATCTCGATCTTGAGAAGACCCATCATCCCAAGACTCAAGCTAATTCCCATAAAACAAAGAAGATCCAAAAGGGTCAAACTCCTTCAGCAACACAACTATAAATTTCTCCAAGAGTATCAATTCTCTCCTTCAAGTACATCCTTTATCAAATGCTATGGGAAGAGCATTCAGATATCTAGATCGGGTCTTAAACGCATTTACGGGTTATTGTTTCTTTCTCAGTGTATCGGCCGGTATAATGAAAATGATGACACAATAACGCAAAGTTGGATGGAGATGGAGCCTTTTCATTATGCCCTCGGAGTTGCTTCTCCTGCAAGGGAGCATCTGCAGCCGTTCGATTACTTCAGCGAAGATGATTCGATTGACTTGAAGGCTGAGAGATTCATCGAAAAGTTCTATGATGAGATGAGAATGCAGGCGCGAGAATTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

162

Amino Acids

19.45

Weight (kDa)

9.92

Isoelectric Point (pI)

76.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 136 - 157 3.4e-07 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68350
fragaria_vesca FvH4_4g27040
malus_domestica MD13G1039400.v1.1 MD16G1040300.v1.1
prunus_persica Prupe.1G313800_v2.0.a1
pyrus_communis pycom13g03390
rosa_chinensis RchiOBHm_Chr4g0434841
rosa_laevigata RLG00000006642
rosa_multiflora Rmu_sc0003726.1_g000004
rosa_roxburghii Rroxscaffold_5G00376050
rosa_rugosa Rorug04G0279300
rosa_samantha Rh4AG335400 Rh4BG343900 Rh4CG358300 Rh4DG337800
rosa_wichuraiana Rw4G029250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 475
AclWI GGATC 1 cut(s) 108
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 2 cut(s) 152, 479
AcuI CTGAAG 2 cut(s) 119, 382
AfaI GTAC 1 cut(s) 187
AgsI TTSAA 2 cut(s) 183, 424
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
AlwI GGATC 1 cut(s) 108
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 382
ApoI RAATTY 2 cut(s) 152, 479
AspLEI GCGC 1 cut(s) 475
AsuII TTCGAA 1 cut(s) 38
BbsI GAAGAC 2 cut(s) 22, 73
BbvI GCAGC 1 cut(s) 394
BccI CCATC 3 cut(s) 80, 316, 322
BceAI ACGGC 1 cut(s) 370
BfaI CTAG 1 cut(s) 228
BfmI CTRYAG 1 cut(s) 380
BisI GCNGC 1 cut(s) 383
BlsI GCNGC 1 cut(s) 384
BmiI GGNNCC 1 cut(s) 333
BmsI GCATC 1 cut(s) 385
BpiI GAAGAC 2 cut(s) 22, 73
Bpu14I TTCGAA 1 cut(s) 38
BpuEI CTTGAG 2 cut(s) 71, 82
BsaJI CCNNGG 1 cut(s) 349
Bse118I RCCGGY 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 349
BseGI GGATG 3 cut(s) 75, 188, 327
BseMII CTCAG 2 cut(s) 284, 420
BseX3I CGGCCG 1 cut(s) 280
BseXI GCAGC 1 cut(s) 394
Bsh1236I CGCG 1 cut(s) 475
Bsh1285I CGRYCG 1 cut(s) 283
BshFI GGCC 1 cut(s) 282
BsiEI CGRYCG 1 cut(s) 283
BsiSI CCGG 1 cut(s) 283
BsmI GAATGC 2 cut(s) 216, 471
BsnI GGCC 1 cut(s) 282
Bsp119I TTCGAA 1 cut(s) 38
Bsp143I GATC 3 cut(s) 57, 113, 230
BspANI GGCC 1 cut(s) 282
BspCNI CTCAG 2 cut(s) 283, 421
BspFNI CGCG 1 cut(s) 475
BspLI GGNNCC 1 cut(s) 333
BspMAI CTGCAG 1 cut(s) 384
BspPI GGATC 1 cut(s) 108
BspQI GCTCTTC 1 cut(s) 206
BspT104I TTCGAA 1 cut(s) 38
BsrFI RCCGGY 1 cut(s) 282
BssAI RCCGGY 1 cut(s) 282
BssECI CCNNGG 1 cut(s) 349
BssMI GATC 3 cut(s) 57, 113, 230
Bst6I CTCTTC 1 cut(s) 206
BstBI TTCGAA 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 471
BstDEI CTNAG 2 cut(s) 270, 429
BstF5I GGATG 3 cut(s) 75, 188, 327
BstFNI CGCG 1 cut(s) 475
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 3 cut(s) 60, 116, 233
BstMBI GATC 3 cut(s) 57, 113, 230
BstMCI CGRYCG 1 cut(s) 283
BstMWI GCNNNNNNNGC 2 cut(s) 365, 382
BstSFI CTRYAG 1 cut(s) 380
BstUI CGCG 1 cut(s) 475
BstV1I GCAGC 1 cut(s) 394
BstV2I GAAGAC 2 cut(s) 22, 73
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BstZI CGGCCG 1 cut(s) 280
BsuRI GGCC 1 cut(s) 282
BtsCI GGATG 3 cut(s) 75, 188, 327
BtsIMutI CAGTG 1 cut(s) 278
Cac8I GCNNGC 1 cut(s) 471
CfoI GCGC 1 cut(s) 475
Cfr10I RCCGGY 1 cut(s) 282
Csp6I GTAC 1 cut(s) 186
CviJI RGCY 5 cut(s) 91, 282, 334, 385, 428
CviKI_1 RGCY 5 cut(s) 91, 282, 334, 385, 428
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 2 cut(s) 270, 429
DpnI GATC 3 cut(s) 59, 115, 232
DpnII GATC 3 cut(s) 57, 113, 230
EaeI YGGCCR 1 cut(s) 280
EagI CGGCCG 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
EclXI CGGCCG 1 cut(s) 280
Eco32I GATATC 1 cut(s) 225
Eco52I CGGCCG 1 cut(s) 280
Eco57I CTGAAG 2 cut(s) 119, 382
EcoRV GATATC 1 cut(s) 225
FaiI YATR 6 cut(s) 101, 150, 207, 288, 345, 453
Fnu4HI GCNGC 1 cut(s) 383
FokI GGATG 3 cut(s) 62, 175, 334
Fsp4HI GCNGC 1 cut(s) 383
FspBI CTAG 1 cut(s) 228
GlaI GCGC 1 cut(s) 474
GluI GCNGC 1 cut(s) 383
HaeIII GGCC 1 cut(s) 282
HapII CCGG 1 cut(s) 283
HhaI GCGC 1 cut(s) 475
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HinfI GANTC 3 cut(s) 84, 410, 435
HpaII CCGG 1 cut(s) 283
Hpy188I TCNGA 2 cut(s) 222, 353
Hpy188III TCNNGA 3 cut(s) 55, 61, 228
HpyAV CCTTC 3 cut(s) 143, 189, 418
HpyCH4V TGCA 3 cut(s) 368, 382, 469
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 382
HpyF3I CTNAG 2 cut(s) 270, 429
HspAI GCGC 1 cut(s) 473
Kzo9I GATC 3 cut(s) 57, 113, 230
LguI GCTCTTC 1 cut(s) 206
LmnI GCTCC 2 cut(s) 331, 373
LpnPI CCDG 3 cut(s) 296, 378, 455
Lsp1109I GCAGC 1 cut(s) 394
LweI GCATC 1 cut(s) 385
MaeI CTAG 1 cut(s) 228
MalI GATC 3 cut(s) 59, 115, 232
MboI GATC 3 cut(s) 57, 113, 230
MboII GAAGA 6 cut(s) 24, 27, 78, 123, 223, 416
MflI RGATCY 1 cut(s) 113
MluCI AATT 5 cut(s) 21, 93, 152, 170, 479
MlyI GAGTC 1 cut(s) 78
MmeI TCCRAC 1 cut(s) 299
MnlI CCTC 1 cut(s) 359
MseI TTAA 1 cut(s) 240
MspI CCGG 1 cut(s) 283
Mva1269I GAATGC 2 cut(s) 216, 471
MvnI CGCG 1 cut(s) 475
MwoI GCNNNNNNNGC 2 cut(s) 365, 382
NdeII GATC 3 cut(s) 57, 113, 230
NlaIV GGNNCC 1 cut(s) 333
NspV TTCGAA 1 cut(s) 38
PciSI GCTCTTC 1 cut(s) 206
PctI GAATGC 2 cut(s) 216, 471
PfeI GAWTC 2 cut(s) 410, 435
PkrI GCNGC 1 cut(s) 384
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 333
PstI CTGCAG 1 cut(s) 384
PsuI RGATCY 1 cut(s) 113
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SapI GCTCTTC 1 cut(s) 206
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 1 cut(s) 383
Sau3AI GATC 3 cut(s) 57, 113, 230
SchI GAGTC 1 cut(s) 78
SetI ASST 1 cut(s) 93
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 1 cut(s) 380
SfuI TTCGAA 1 cut(s) 38
SmlI CTYRAG 2 cut(s) 61, 86
SmoI CTYRAG 2 cut(s) 61, 86
Sse9I AATT 5 cut(s) 21, 93, 152, 170, 479
SspMI CTAG 1 cut(s) 228
TaqI TCGA 5 cut(s) 38, 56, 390, 413, 441
TasI AATT 5 cut(s) 21, 93, 152, 170, 479
TatI WGTACW 1 cut(s) 185
TfiI GAWTC 2 cut(s) 410, 435
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 1 cut(s) 278
TseI GCWGC 1 cut(s) 382
TspDTI ATGAA 3 cut(s) 306, 329, 427
TspRI CASTG 1 cut(s) 278
XapI RAATTY 2 cut(s) 152, 479
XbaI TCTAGA 1 cut(s) 227
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.