MD13G1039400.v1.1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0015368
Physical Location & Seq
Reverse (-)
2688550 .. 2689041
492 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1039400.v1.1.491

Sequence Viewer

Length: 492 bp
ATGTCGAAAAGACGACTACCCGTTTTTCAGAATCTCTCCAAGCTTCTGAAGGTCTTTATCTCCGTTGCCAGAGTGAGAAAACTATCATTTGAAAACTCATTTATTAGGAAGTTGCAATATTCAAAGAAGATGAAGCTTCTGAAGAATTACGACTATGGGTTTGTAAGAGAATATCAGTTCTCTCCCTCCAACACTCCCCTCATTCATTACCACAGAAGGAAGCAGCTCATGAAGAACGAAAGCCTTCGAGACGTGTATTCGATGTTCTTTCTCTGCAAATGTTGGGGCAACAGCTTGAGAGTTGAAGGAGAAGATGGAGATTTCACGTTGGAAGCTCTGCCGACCACCGGAAATGATGACAATGCAGTGGCTTTATATGAGCCGCTGGATTGGGAAGTCCACGAAGAAGAAGCTTCCATTGATTTGCGGGCGCAGATGTTTATTGAGAGGTTCTATGAAGAAATGAGAATGCAGAGGCAGGAGTCGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

164

Amino Acids

19.62

Weight (kDa)

8.81

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 139 - 163 8.6e-09 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68350
fragaria_vesca FvH4_4g27040
malus_domestica MD13G1039400.v1.1 MD16G1040300.v1.1
prunus_persica Prupe.1G313800_v2.0.a1
pyrus_communis pycom13g03390
rosa_chinensis RchiOBHm_Chr4g0434841
rosa_laevigata RLG00000006642
rosa_multiflora Rmu_sc0003726.1_g000004
rosa_roxburghii Rroxscaffold_5G00376050
rosa_rugosa Rorug04G0279300
rosa_samantha Rh4AG335400 Rh4BG343900 Rh4CG358300 Rh4DG337800
rosa_wichuraiana Rw4G029250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 383, 427
AcuI CTGAAG 2 cut(s) 68, 161
AfiI CCNNNNNNNGG 1 cut(s) 347
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 3 cut(s) 92, 123, 305
AjiI CACGTC 1 cut(s) 253
AluBI AGCT 6 cut(s) 43, 136, 226, 294, 335, 413
AluI AGCT 6 cut(s) 43, 136, 226, 294, 335, 413
Alw26I GTCTC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 223
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
Asp700I GAANNNNTTC 1 cut(s) 243
AspLEI GCGC 1 cut(s) 433
BbvI GCAGC 1 cut(s) 235
BccI CCATC 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 243
BisI GCNGC 2 cut(s) 224, 383
BlsI GCNGC 2 cut(s) 225, 384
BmgBI CACGTC 1 cut(s) 253
BpuEI CTTGAG 1 cut(s) 316
BsaWI WCCGGW 1 cut(s) 347
Bsc4I CCNNNNNNNGG 1 cut(s) 347
BseLI CCNNNNNNNGG 1 cut(s) 347
BseXI GCAGC 1 cut(s) 235
BsiSI CCGG 1 cut(s) 348
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 1 cut(s) 243
BsmBI CGTCTC 1 cut(s) 243
BsmI GAATGC 1 cut(s) 474
BspACI CCGC 2 cut(s) 383, 427
BspHI TCATGA 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 429
BstHHI GCGC 1 cut(s) 433
BstMAI GTCTC 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 235
BtrI CACGTC 1 cut(s) 253
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 1 cut(s) 372
Cac8I GCNNGC 1 cut(s) 429
CciI TCATGA 1 cut(s) 228
CfoI GCGC 1 cut(s) 433
CviAII CATG 1 cut(s) 229
CviJI RGCY 9 cut(s) 43, 136, 226, 243, 294, 335, 371, 382, 413
CviKI_1 RGCY 9 cut(s) 43, 136, 226, 243, 294, 335, 371, 382, 413
Eco57I CTGAAG 2 cut(s) 68, 161
Esp3I CGTCTC 1 cut(s) 243
FaeI CATG 1 cut(s) 232
FaiI YATR 5 cut(s) 156, 230, 376, 378, 456
FatI CATG 1 cut(s) 228
FauI CCCGC 1 cut(s) 420
Fnu4HI GCNGC 2 cut(s) 224, 383
Fsp4HI GCNGC 2 cut(s) 224, 383
GlaI GCGC 1 cut(s) 432
GluI GCNGC 2 cut(s) 224, 383
HapII CCGG 1 cut(s) 348
HhaI GCGC 1 cut(s) 433
Hin1II CATG 1 cut(s) 232
Hin6I GCGC 1 cut(s) 431
HinP1I GCGC 1 cut(s) 431
HindIII AAGCTT 3 cut(s) 41, 134, 411
HinfI GANTC 2 cut(s) 31, 482
HpaII CCGG 1 cut(s) 348
Hpy166II GTNNAC 1 cut(s) 400
Hpy188I TCNGA 3 cut(s) 30, 48, 141
Hpy188III TCNNGA 2 cut(s) 229, 248
Hpy8I GTNNAC 1 cut(s) 400
HpyAV CCTTC 4 cut(s) 43, 210, 254, 299
HpyCH4IV ACGT 2 cut(s) 252, 326
HpyCH4V TGCA 4 cut(s) 115, 276, 365, 472
HpySE526I ACGT 2 cut(s) 252, 326
Hsp92II CATG 1 cut(s) 232
HspAI GCGC 1 cut(s) 431
LpnPI CCDG 4 cut(s) 82, 361, 371, 464
Lsp1109I GCAGC 1 cut(s) 235
MaeII ACGT 2 cut(s) 252, 326
MboII GAAGA 7 cut(s) 139, 154, 244, 323, 416, 419, 470
MluCI AATT 1 cut(s) 145
MlyI GAGTC 1 cut(s) 491
MmeI TCCRAC 2 cut(s) 213, 309
MnlI CCTC 4 cut(s) 196, 209, 441, 468
MroXI GAANNNNTTC 1 cut(s) 243
MseI TTAA 1 cut(s) 490
MspA1I CMGCKG 1 cut(s) 385
MspI CCGG 1 cut(s) 348
Mva1269I GAATGC 1 cut(s) 474
NlaIII CATG 1 cut(s) 232
PagI TCATGA 1 cut(s) 228
PctI GAATGC 1 cut(s) 474
PdmI GAANNNNTTC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 31
PkrI GCNGC 2 cut(s) 225, 384
PleI GAGTC 1 cut(s) 490
PpsI GAGTC 1 cut(s) 490
PsrI GAACNNNNNNTAC 2 cut(s) 248, 280
SaqAI TTAA 1 cut(s) 490
SatI GCNGC 2 cut(s) 224, 383
SchI GAGTC 1 cut(s) 491
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
Sse9I AATT 1 cut(s) 145
SsiI CCGC 2 cut(s) 383, 427
SspI AATATT 1 cut(s) 119
TaiI ACGT 2 cut(s) 255, 329
TaqI TCGA 3 cut(s) 5, 247, 260
TasI AATT 1 cut(s) 145
TauI GCSGC 1 cut(s) 385
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 1 cut(s) 490
Tru9I TTAA 1 cut(s) 490
TscAI CASTG 1 cut(s) 372
TseI GCWGC 1 cut(s) 223
TspDTI ATGAA 4 cut(s) 146, 194, 245, 471
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 1 cut(s) 372
XmnI GAANNNNTTC 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.