Rmu_sc0003726.1_g000004

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003726.1
OG0015368
Physical Location & Seq
Forward (+)
10898 .. 11398
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003726.1_g000004.1.cds

Sequence Viewer

Length: 501 bp
atgtccagaaaacacctacccgttttttcgaagctccttagagtcttcatcttcattgccaaagtgaggaagctctcgttcgagaagtactactcgtcactcatcaggaagtcgcagaaaaaccgaaagaagctgaggtttatggagcattacaactacggcttcctcggcgaatacgagttctcgccttctaacactcccctcattcactacccgagaaagcagtttccgaagaacagagtctcccgagaattggagtctctgttctttctctgtagatgctggggcagcctccgagttctggaaggcgaggacaacggagatttcgccgtggaagctcttccagccagttctactggcactgaagatgcaaatgcgttggctcttttggcgccttcgttggattggggaagtgaagaagcttcgattgatctgcgggctcagaggtttatcgaaaggttctatgaggacatgagaatgcagaggcaggagtctatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

166

Amino Acids

19.56

Weight (kDa)

9.39

Isoelectric Point (pI)

51.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68350
fragaria_vesca FvH4_4g27040
malus_domestica MD13G1039400.v1.1 MD16G1040300.v1.1
prunus_persica Prupe.1G313800_v2.0.a1
pyrus_communis pycom13g03390
rosa_chinensis RchiOBHm_Chr4g0434841
rosa_laevigata RLG00000006642
rosa_multiflora Rmu_sc0003726.1_g000004
rosa_roxburghii Rroxscaffold_5G00376050
rosa_rugosa Rorug04G0279300
rosa_samantha Rh4AG335400 Rh4BG343900 Rh4CG358300 Rh4DG337800
rosa_wichuraiana Rw4G029250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 391
AciI CCGC 1 cut(s) 436
AcuI CTGAAG 1 cut(s) 384
AcyI GRCGYC 1 cut(s) 392
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 3 cut(s) 66, 253, 301
AloI GAACNNNNNNTCC 4 cut(s) 227, 248, 259, 280
AluBI AGCT 5 cut(s) 34, 73, 133, 338, 422
AluI AGCT 5 cut(s) 34, 73, 133, 338, 422
Alw26I GTCTC 2 cut(s) 247, 264
Ama87I CYCGRG 2 cut(s) 214, 246
ApeKI GCWGC 1 cut(s) 288
Asp700I GAANNNNTTC 1 cut(s) 339
AspLEI GCGC 1 cut(s) 394
AsuII TTCGAA 1 cut(s) 29
AvaI CYCGRG 2 cut(s) 214, 246
BanI GGYRCC 1 cut(s) 391
BanII GRGCYC 1 cut(s) 442
BbsI GAAGAC 1 cut(s) 37
BbvCI CCTCAGC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 300
BceAI ACGGC 2 cut(s) 175, 314
BcgI CGANNNNNNTGC 2 cut(s) 415, 449
BcoDI GTCTC 2 cut(s) 247, 264
BfmI CTRYAG 1 cut(s) 274
BfoI RGCGCY 1 cut(s) 395
BisI GCNGC 1 cut(s) 289
BlsI GCNGC 1 cut(s) 290
BmcAI AGTACT 1 cut(s) 89
BmeT110I CYCGRG 2 cut(s) 214, 246
BmiI GGNNCC 1 cut(s) 393
BmsI GCATC 2 cut(s) 269, 358
BpiI GAAGAC 1 cut(s) 37
Bpu10I CCTNAGC 1 cut(s) 134
Bpu14I TTCGAA 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 392
BsaJI CCNNGG 2 cut(s) 166, 330
BsaXI ACNNNNNCTCC 4 cut(s) 227, 248, 257, 278
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 253, 301
Bse1I ACTGG 2 cut(s) 348, 361
Bse3DI GCAATG 1 cut(s) 54
BseDI CCNNGG 2 cut(s) 166, 330
BseLI CCNNNNNNNGG 3 cut(s) 66, 253, 301
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 2 cut(s) 125, 455
BseNI ACTGG 2 cut(s) 348, 361
BseXI GCAGC 1 cut(s) 300
BseYI CCCAGC 1 cut(s) 282
BshNI GGYRCC 1 cut(s) 391
BsiHKCI CYCGRG 2 cut(s) 214, 246
BslI CCNNNNNNNGG 3 cut(s) 66, 253, 301
BsmAI GTCTC 2 cut(s) 247, 264
BsmI GAATGC 1 cut(s) 483
BsoBI CYCGRG 2 cut(s) 214, 246
Bsp119I TTCGAA 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 442
Bsp143I GATC 1 cut(s) 430
BspACI CCGC 1 cut(s) 436
BspCNI CTCAG 2 cut(s) 126, 454
BspLI GGNNCC 1 cut(s) 393
BspQI GCTCTTC 1 cut(s) 345
BspT104I TTCGAA 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 391
BsrDI GCAATG 1 cut(s) 54
BsrI ACTGG 2 cut(s) 348, 361
BssECI CCNNGG 2 cut(s) 166, 330
BssMI GATC 1 cut(s) 430
BssNI GRCGYC 1 cut(s) 392
Bst6I CTCTTC 1 cut(s) 345
BstACI GRCGYC 1 cut(s) 392
BstBI TTCGAA 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 438
BstDEI CTNAG 3 cut(s) 38, 134, 441
BstDSI CCRYGG 1 cut(s) 330
BstH2I RGCGCY 1 cut(s) 395
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 1 cut(s) 433
BstMAI GTCTC 2 cut(s) 247, 264
BstMBI GATC 1 cut(s) 430
BstMWI GCNNNNNNNGC 5 cut(s) 168, 288, 335, 344, 389
BstSFI CTRYAG 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 300
BstV2I GAAGAC 1 cut(s) 37
BtgI CCRYGG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 438
CfoI GCGC 1 cut(s) 394
Csp6I GTAC 1 cut(s) 88
CviAII CATG 1 cut(s) 472
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 3 cut(s) 38, 134, 441
DinI GGCGCC 1 cut(s) 393
DpnI GATC 1 cut(s) 432
DpnII GATC 1 cut(s) 430
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Eco24I GRGCYC 1 cut(s) 442
Eco57I CTGAAG 1 cut(s) 384
Eco88I CYCGRG 2 cut(s) 214, 246
EcoT38I GRGCYC 1 cut(s) 442
EgeI GGCGCC 1 cut(s) 393
EheI GGCGCC 1 cut(s) 393
FaeI CATG 1 cut(s) 475
FaiI YATR 3 cut(s) 143, 465, 473
FatI CATG 1 cut(s) 471
FauI CCCGC 1 cut(s) 429
Fnu4HI GCNGC 1 cut(s) 289
FriOI GRGCYC 1 cut(s) 442
Fsp4HI GCNGC 1 cut(s) 289
GlaI GCGC 1 cut(s) 393
GluI GCNGC 1 cut(s) 289
GsaI CCCAGC 1 cut(s) 286
HaeII RGCGCY 1 cut(s) 395
HhaI GCGC 1 cut(s) 394
Hin1I GRCGYC 1 cut(s) 392
Hin1II CATG 1 cut(s) 475
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HindIII AAGCTT 1 cut(s) 420
HinfI GANTC 4 cut(s) 42, 240, 257, 491
Hpy188I TCNGA 3 cut(s) 231, 296, 444
Hpy188III TCNNGA 5 cut(s) 6, 82, 106, 246, 302
HpyAV CCTTC 3 cut(s) 198, 299, 405
HpyCH4V TGCA 2 cut(s) 371, 481
HpyF10VI GCNNNNNNNGC 5 cut(s) 168, 288, 335, 344, 389
HpyF3I CTNAG 3 cut(s) 38, 134, 441
Hsp92I GRCGYC 1 cut(s) 392
Hsp92II CATG 1 cut(s) 475
HspAI GCGC 1 cut(s) 392
KasI GGCGCC 1 cut(s) 391
Kzo9I GATC 1 cut(s) 430
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 2 cut(s) 39, 145
LpnPI CCDG 8 cut(s) 19, 91, 268, 287, 342, 357, 361, 473
Lsp1109I GCAGC 1 cut(s) 300
LweI GCATC 2 cut(s) 269, 358
MaeIII GTNAC 1 cut(s) 96
MalI GATC 1 cut(s) 432
MboI GATC 1 cut(s) 430
MboII GAAGA 6 cut(s) 37, 43, 244, 332, 377, 428
MhlI GDGCHC 1 cut(s) 442
MluCI AATT 1 cut(s) 251
Mly113I GGCGCC 1 cut(s) 392
MlyI GAGTC 4 cut(s) 51, 249, 266, 500
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 9 cut(s) 60, 129, 176, 212, 302, 304, 438, 460, 477
MroXI GAANNNNTTC 1 cut(s) 339
MslI CAYNNNNRTG 1 cut(s) 476
Mva1269I GAATGC 1 cut(s) 483
MwoI GCNNNNNNNGC 5 cut(s) 168, 288, 335, 344, 389
NarI GGCGCC 1 cut(s) 392
NdeII GATC 1 cut(s) 430
NlaIII CATG 1 cut(s) 475
NlaIV GGNNCC 1 cut(s) 393
NmeAIII GCCGAG 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 96
NspV TTCGAA 1 cut(s) 29
PciSI GCTCTTC 1 cut(s) 345
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PctI GAATGC 1 cut(s) 483
PdmI GAANNNNTTC 1 cut(s) 339
PkrI GCNGC 1 cut(s) 290
PleI GAGTC 4 cut(s) 50, 248, 265, 499
PluTI GGCGCC 1 cut(s) 395
PpsI GAGTC 4 cut(s) 50, 248, 265, 499
PspFI CCCAGC 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 393
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 476
SapI GCTCTTC 1 cut(s) 345
SatI GCNGC 1 cut(s) 289
Sau3AI GATC 1 cut(s) 430
ScaI AGTACT 1 cut(s) 89
SchI GAGTC 4 cut(s) 51, 249, 266, 500
SduI GDGCHC 1 cut(s) 442
SetI ASST 9 cut(s) 18, 36, 75, 135, 140, 340, 424, 449, 461
SfaNI GCATC 2 cut(s) 269, 358
SfcI CTRYAG 1 cut(s) 274
SfoI GGCGCC 1 cut(s) 393
SfuI TTCGAA 1 cut(s) 29
SmiMI CAYNNNNRTG 1 cut(s) 476
Sse9I AATT 1 cut(s) 251
SsiI CCGC 1 cut(s) 436
SspDI GGCGCC 1 cut(s) 391
TaqI TCGA 4 cut(s) 29, 81, 425, 453
TasI AATT 1 cut(s) 251
TatI WGTACW 1 cut(s) 87
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 1 cut(s) 96
TseI GCWGC 1 cut(s) 288
Tsp45I GTSAC 1 cut(s) 96
TspDTI ATGAA 2 cut(s) 37, 43
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 1 cut(s) 367
XmnI GAANNNNTTC 1 cut(s) 339
ZrmI AGTACT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.