pycom13g03390

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0015368
Physical Location & Seq
Reverse (-)
2249462 .. 2249932
471 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g03390.1

Sequence Viewer

Length: 471 bp
ATGTCGAAAAGACGACTACCCATTTTTCAGAATCTCTCCAAGCTTCTGAAAGTCTTTATCTTCGTTGCCAGAGTGAGAAAACTATCATTTGAAAACTCATTTATTAGGAAGTTGCAATATTCAAAGAAGATGAAGCTTCTGAAGAATTACGACTATGGGTTTGTAAGAGAATACCAGTTCTCTCTCTCCAACACTCCCCTCATTCGTAACGAAAGCCTTCGAGTTCGAGACGTGTATTCGATGTTCTTTCTCTGCAAATGTTGGGGCAACAGCTTGAGAGTTGAAGGAGAAGATCGAGATTTCACGTTGGAAGCTCTGCCGACCACCGGAAATGATGACAATGCAGTGGCTTTATATGAGCCGTTGGATTGGGAAGACCACGAAGAAGAAGCTTCCATTGATTTGCGGGCGCAGATGTTTATTGAGAGGTTCTATGAAGAAATGAGAATGCAGAGGCAGGAGTCGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

157

Amino Acids

18.86

Weight (kDa)

7.72

Isoelectric Point (pI)

40.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 132 - 156 8e-09 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68350
fragaria_vesca FvH4_4g27040
malus_domestica MD13G1039400.v1.1 MD16G1040300.v1.1
prunus_persica Prupe.1G313800_v2.0.a1
pyrus_communis pycom13g03390
rosa_chinensis RchiOBHm_Chr4g0434841
rosa_laevigata RLG00000006642
rosa_multiflora Rmu_sc0003726.1_g000004
rosa_roxburghii Rroxscaffold_5G00376050
rosa_rugosa Rorug04G0279300
rosa_samantha Rh4AG335400 Rh4BG343900 Rh4CG358300 Rh4DG337800
rosa_wichuraiana Rw4G029250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 406
AcuI CTGAAG 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 326
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 3 cut(s) 92, 123, 284
AjiI CACGTC 1 cut(s) 232
AluBI AGCT 5 cut(s) 43, 136, 273, 314, 392
AluI AGCT 5 cut(s) 43, 136, 273, 314, 392
Alw26I GTCTC 1 cut(s) 222
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
Asp700I GAANNNNTTC 1 cut(s) 216
AspLEI GCGC 1 cut(s) 412
BbsI GAAGAC 1 cut(s) 381
BceAI ACGGC 1 cut(s) 346
BcoDI GTCTC 1 cut(s) 222
BmgBI CACGTC 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 295
BsaWI WCCGGW 1 cut(s) 326
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 326
BseNI ACTGG 1 cut(s) 175
BsiSI CCGG 1 cut(s) 327
BslI CCNNNNNNNGG 1 cut(s) 326
BsmAI GTCTC 1 cut(s) 222
BsmBI CGTCTC 1 cut(s) 222
BsmI GAATGC 1 cut(s) 453
Bsp143I GATC 1 cut(s) 292
BspACI CCGC 1 cut(s) 406
BsrI ACTGG 1 cut(s) 175
BssMI GATC 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 408
BstHHI GCGC 1 cut(s) 412
BstKTI GATC 1 cut(s) 295
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 1 cut(s) 292
BstV2I GAAGAC 1 cut(s) 381
BtrI CACGTC 1 cut(s) 232
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 351
Cac8I GCNNGC 1 cut(s) 408
CfoI GCGC 1 cut(s) 412
CviJI RGCY 8 cut(s) 43, 136, 216, 273, 314, 350, 361, 392
CviKI_1 RGCY 8 cut(s) 43, 136, 216, 273, 314, 350, 361, 392
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 161
Esp3I CGTCTC 1 cut(s) 222
FaiI YATR 4 cut(s) 156, 355, 357, 435
FauI CCCGC 1 cut(s) 399
GlaI GCGC 1 cut(s) 411
HapII CCGG 1 cut(s) 327
HhaI GCGC 1 cut(s) 412
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HindIII AAGCTT 3 cut(s) 41, 134, 390
HinfI GANTC 2 cut(s) 31, 461
HpaII CCGG 1 cut(s) 327
Hpy188I TCNGA 3 cut(s) 30, 48, 141
Hpy188III TCNNGA 2 cut(s) 227, 296
HpyAV CCTTC 2 cut(s) 227, 278
HpyCH4IV ACGT 2 cut(s) 231, 305
HpyCH4V TGCA 4 cut(s) 115, 255, 344, 451
HpySE526I ACGT 2 cut(s) 231, 305
HspAI GCGC 1 cut(s) 410
Kzo9I GATC 1 cut(s) 292
LpnPI CCDG 4 cut(s) 82, 188, 340, 443
MaeII ACGT 2 cut(s) 231, 305
MaeIII GTNAC 1 cut(s) 206
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 8 cut(s) 52, 139, 154, 302, 386, 395, 398, 449
MluCI AATT 1 cut(s) 145
MlyI GAGTC 1 cut(s) 470
MmeI TCCRAC 3 cut(s) 213, 288, 345
MnlI CCTC 3 cut(s) 209, 420, 447
MroXI GAANNNNTTC 1 cut(s) 216
MseI TTAA 1 cut(s) 469
MspI CCGG 1 cut(s) 327
Mva1269I GAATGC 1 cut(s) 453
NdeII GATC 1 cut(s) 292
PctI GAATGC 1 cut(s) 453
PdmI GAANNNNTTC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 31
PleI GAGTC 1 cut(s) 469
PpsI GAGTC 1 cut(s) 469
PsrI GAACNNNNNNTAC 2 cut(s) 227, 259
SaqAI TTAA 1 cut(s) 469
Sau3AI GATC 1 cut(s) 292
SchI GAGTC 1 cut(s) 470
SetI ASST 8 cut(s) 45, 138, 234, 275, 308, 316, 394, 431
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
Sse9I AATT 1 cut(s) 145
SsiI CCGC 1 cut(s) 406
SspI AATATT 1 cut(s) 119
TaiI ACGT 2 cut(s) 234, 308
TaqI TCGA 5 cut(s) 5, 220, 226, 239, 295
TasI AATT 1 cut(s) 145
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 1 cut(s) 469
Tru9I TTAA 1 cut(s) 469
TscAI CASTG 1 cut(s) 351
TspDTI ATGAA 2 cut(s) 146, 450
TspRI CASTG 1 cut(s) 351
XmnI GAANNNNTTC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.