FvH4_4g27040

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015368
Physical Location & Seq
Reverse (-)
28198627 .. 28199145
519 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g27040.t1

Sequence Viewer

Length: 519 bp
ATGTCGAGGAAACACATGCCCATTTTCTCGAAGCTCCTCAGAGTCTTCATCTTCATTGCCAAAGTGAGGAAGCTCTCGTTGGAGAAGTACTACTCGTCACTCATCAGGAAGTCGCAGAGAGTTCGAAACCGAAAGAAGCTGAGGTTTATGGAGCATTACAACTACGGCTTCCTCGGCGAATACGAGTTCTCGCCTTCCAACACTCCCCTCATTCGCTACCCCAGAAACCAGTTCACAAAGAAGAACAGAGGCTCCCGAGACTTGGAGTCTCCGTTCTTCCTATGCAAATGCTGGGGCAGCCTTAGAGTGCTGGAAGGCGAGGACCGCGGAGACTTTGCCGTGGAAGCTCTTCCGGCCAGTACTACTGACACCGAAGATGCAAATGCGTTAGCTTTGGTGGAGCCGTCGTTGGATTGGGAAAGTGACGAAGCTTCGATTGATATGCGGGCTCAGATGTTCATCGAGAGGTTCTATGAGGACATGAGGATGCAGAGGCAGGAGTCTATTGAAGCTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

173

Amino Acids

20.39

Weight (kDa)

8.97

Isoelectric Point (pI)

49.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 145 - 171 5.9e-10 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68350
fragaria_vesca FvH4_4g27040
malus_domestica MD13G1039400.v1.1 MD16G1040300.v1.1
prunus_persica Prupe.1G313800_v2.0.a1
pyrus_communis pycom13g03390
rosa_chinensis RchiOBHm_Chr4g0434841
rosa_laevigata RLG00000006642
rosa_multiflora Rmu_sc0003726.1_g000004
rosa_roxburghii Rroxscaffold_5G00376050
rosa_rugosa Rorug04G0279300
rosa_samantha Rh4AG335400 Rh4BG343900 Rh4CG358300 Rh4DG337800
rosa_wichuraiana Rw4G029250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 327
AciI CCGC 3 cut(s) 325, 327, 445
AcoI YGGCCR 1 cut(s) 354
AfaI GTAC 2 cut(s) 89, 361
AfiI CCNNNNNNNGG 2 cut(s) 66, 262
AgsI TTSAA 1 cut(s) 509
AhdI GACNNNNNGTC 1 cut(s) 265
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AloI GAACNNNNNNTCC 4 cut(s) 236, 257, 268, 289
AluBI AGCT 7 cut(s) 34, 73, 139, 347, 392, 431, 512
AluI AGCT 7 cut(s) 34, 73, 139, 347, 392, 431, 512
Alw26I GTCTC 3 cut(s) 252, 273, 324
Ama87I CYCGRG 1 cut(s) 255
AoxI GGCC 1 cut(s) 354
ApeKI GCWGC 1 cut(s) 297
Asp700I GAANNNNTTC 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 322
AsuII TTCGAA 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 37
BbvCI CCTCAGC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 309
BceAI ACGGC 3 cut(s) 181, 323, 388
BcgI CGANNNNNNTGC 4 cut(s) 104, 138, 424, 458
BcoDI GTCTC 3 cut(s) 252, 273, 324
BisI GCNGC 1 cut(s) 298
BlsI GCNGC 1 cut(s) 299
BmcAI AGTACT 2 cut(s) 89, 361
Bme18I GGWCC 1 cut(s) 322
BmeRI GACNNNNNGTC 1 cut(s) 265
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 322
BmiI GGNNCC 2 cut(s) 253, 402
BmsI GCATC 2 cut(s) 367, 477
BpiI GAAGAC 1 cut(s) 37
Bpu10I CCTNAGC 1 cut(s) 140
Bpu14I TTCGAA 1 cut(s) 124
BsaBI GATNNNNATC 1 cut(s) 458
BsaJI CCNNGG 3 cut(s) 172, 325, 339
BsaXI ACNNNNNCTCC 6 cut(s) 236, 257, 266, 287, 392, 422
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 262
Bse1I ACTGG 2 cut(s) 229, 357
Bse3DI GCAATG 1 cut(s) 54
Bse8I GATNNNNATC 1 cut(s) 458
BseDI CCNNGG 3 cut(s) 172, 325, 339
BseGI GGATG 1 cut(s) 492
BseJI GATNNNNATC 1 cut(s) 458
BseLI CCNNNNNNNGG 2 cut(s) 66, 262
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 3 cut(s) 52, 131, 464
BseNI ACTGG 2 cut(s) 229, 357
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 309
BseYI CCCAGC 1 cut(s) 291
Bsh1236I CGCG 1 cut(s) 327
BshFI GGCC 1 cut(s) 356
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 1 cut(s) 353
BslI CCNNNNNNNGG 2 cut(s) 66, 262
BsmAI GTCTC 3 cut(s) 252, 273, 324
BsnI GGCC 1 cut(s) 356
BsoBI CYCGRG 1 cut(s) 255
Bsp119I TTCGAA 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 451
BspACI CCGC 3 cut(s) 325, 327, 445
BspANI GGCC 1 cut(s) 356
BspCNI CTCAG 3 cut(s) 51, 132, 463
BspFNI CGCG 1 cut(s) 327
BspLI GGNNCC 2 cut(s) 253, 402
BspQI GCTCTTC 1 cut(s) 354
BspT104I TTCGAA 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 54
BsrI ACTGG 2 cut(s) 229, 357
BssECI CCNNGG 3 cut(s) 172, 325, 339
Bst6I CTCTTC 1 cut(s) 354
BstBI TTCGAA 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 447
BstDEI CTNAG 4 cut(s) 38, 140, 302, 450
BstDSI CCRYGG 2 cut(s) 325, 339
BstF5I GGATG 1 cut(s) 492
BstFNI CGCG 1 cut(s) 327
BstMAI GTCTC 3 cut(s) 252, 273, 324
BstMWI GCNNNNNNNGC 5 cut(s) 174, 297, 324, 344, 353
BstNSI RCATGY 1 cut(s) 19
BstUI CGCG 1 cut(s) 327
BstV1I GCAGC 1 cut(s) 309
BstV2I GAAGAC 1 cut(s) 37
BsuRI GGCC 1 cut(s) 356
BtgI CCRYGG 2 cut(s) 325, 339
BtsCI GGATG 1 cut(s) 492
Cac8I GCNNGC 1 cut(s) 447
Cfr13I GGNCC 1 cut(s) 322
Cfr42I CCGCGG 1 cut(s) 328
Csp6I GTAC 2 cut(s) 88, 360
CviAII CATG 2 cut(s) 16, 481
CviQI GTAC 2 cut(s) 88, 360
DdeI CTNAG 4 cut(s) 38, 140, 302, 450
DriI GACNNNNNGTC 1 cut(s) 265
EaeI YGGCCR 1 cut(s) 354
Eam1104I CTCTTC 1 cut(s) 354
Eam1105I GACNNNNNGTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 354
Eco24I GRGCYC 1 cut(s) 451
Eco47I GGWCC 1 cut(s) 322
Eco88I CYCGRG 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 451
FaeI CATG 2 cut(s) 19, 484
FaiI YATR 6 cut(s) 17, 149, 283, 443, 474, 482
FatI CATG 2 cut(s) 15, 480
FauI CCCGC 1 cut(s) 438
Fnu4HI GCNGC 1 cut(s) 298
FokI GGATG 1 cut(s) 499
FriOI GRGCYC 1 cut(s) 451
Fsp4HI GCNGC 1 cut(s) 298
GluI GCNGC 1 cut(s) 298
GsaI CCCAGC 1 cut(s) 295
HaeIII GGCC 1 cut(s) 356
HapII CCGG 1 cut(s) 353
Hin1II CATG 2 cut(s) 19, 484
HindIII AAGCTT 2 cut(s) 429, 510
HinfI GANTC 3 cut(s) 42, 266, 500
HpaII CCGG 1 cut(s) 353
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 2 cut(s) 41, 453
Hpy188III TCNNGA 4 cut(s) 28, 106, 255, 463
Hpy8I GTNNAC 1 cut(s) 234
Hpy99I CGWCG 1 cut(s) 409
HpyAV CCTTC 2 cut(s) 204, 308
HpyCH4V TGCA 3 cut(s) 285, 380, 490
HpyF10VI GCNNNNNNNGC 5 cut(s) 174, 297, 324, 344, 353
HpyF3I CTNAG 4 cut(s) 38, 140, 302, 450
Hsp92II CATG 2 cut(s) 19, 484
KspI CCGCGG 1 cut(s) 328
LguI GCTCTTC 1 cut(s) 354
LmnI GCTCC 4 cut(s) 39, 151, 257, 400
LpnPI CCDG 8 cut(s) 91, 235, 242, 277, 296, 366, 370, 482
Lsp1109I GCAGC 1 cut(s) 309
LweI GCATC 2 cut(s) 367, 477
MaeIII GTNAC 2 cut(s) 96, 422
MboII GAAGA 6 cut(s) 37, 43, 253, 268, 341, 386
MhlI GDGCHC 1 cut(s) 451
MlyI GAGTC 3 cut(s) 51, 275, 509
MmeI TCCRAC 3 cut(s) 60, 222, 390
MroXI GAANNNNTTC 1 cut(s) 348
MslI CAYNNNNRTG 1 cut(s) 485
MspA1I CMGCKG 1 cut(s) 327
MspI CCGG 1 cut(s) 353
MvnI CGCG 1 cut(s) 327
MwoI GCNNNNNNNGC 5 cut(s) 174, 297, 324, 344, 353
NlaIII CATG 2 cut(s) 19, 484
NlaIV GGNNCC 2 cut(s) 253, 402
NmeAIII GCCGAG 1 cut(s) 153
NmuCI GTSAC 2 cut(s) 96, 422
NspI RCATGY 1 cut(s) 19
NspV TTCGAA 1 cut(s) 124
PciSI GCTCTTC 1 cut(s) 354
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 348
PkrI GCNGC 1 cut(s) 299
PleI GAGTC 3 cut(s) 50, 274, 508
PpsI GAGTC 3 cut(s) 50, 274, 508
PspFI CCCAGC 1 cut(s) 291
PspN4I GGNNCC 2 cut(s) 253, 402
PspPI GGNCC 1 cut(s) 322
RsaI GTAC 2 cut(s) 89, 361
RsaNI GTAC 2 cut(s) 88, 360
RseI CAYNNNNRTG 1 cut(s) 485
SacII CCGCGG 1 cut(s) 328
SapI GCTCTTC 1 cut(s) 354
SatI GCNGC 1 cut(s) 298
Sau96I GGNCC 1 cut(s) 322
ScaI AGTACT 2 cut(s) 89, 361
SchI GAGTC 3 cut(s) 51, 275, 509
SduI GDGCHC 1 cut(s) 451
SetI ASST 9 cut(s) 36, 75, 141, 146, 349, 394, 433, 470, 514
SfaNI GCATC 2 cut(s) 367, 477
Sfr303I CCGCGG 1 cut(s) 328
SfuI TTCGAA 1 cut(s) 124
SgrBI CCGCGG 1 cut(s) 328
SinI GGWCC 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 485
SsiI CCGC 3 cut(s) 325, 327, 445
TaqI TCGA 5 cut(s) 5, 29, 124, 434, 462
TatI WGTACW 2 cut(s) 87, 359
TseFI GTSAC 2 cut(s) 96, 422
TseI GCWGC 1 cut(s) 297
Tsp45I GTSAC 2 cut(s) 96, 422
TspDTI ATGAA 3 cut(s) 37, 43, 448
TspGWI ACGGA 1 cut(s) 261
VpaK11BI GGWCC 1 cut(s) 322
XceI RCATGY 1 cut(s) 19
XmnI GAANNNNTTC 1 cut(s) 348
ZrmI AGTACT 2 cut(s) 89, 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.