MD16G1040300.v1.1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0015368
Physical Location & Seq
Reverse (-)
2864114 .. 2864602
489 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1040300.v1.1.491

Sequence Viewer

Length: 489 bp
ATGTCGAAAAGACGACTACCCGTTTTTCAGAAGTTCTCCAAGCTCCTGAAAATCTTTATCTTCGTTGCCAAAGTGAGGAAACTATCATTTGAAAACTCATTTATTAGGATGTTACAATATTCAAAGAAGATGAAGCTTCTGAAGAATTACAACTCTGGGTTTGTAAGAGAATACCAGTTCTCTCCCTCCAACACTCCCCTCATTCATTACCACAGAAGGAGGCAGCTCATGAAGAACGAAAGCCTTCGAGACGTGTACTCGATGTTCTTTCTCTGCAAATGCTGGGGCAATAGCTTGAGAGTTGAAGGAGAAGATGGAGATTTCACGTTGGAAGCTCTGCCGACTGCCGGAGATGACAATGCAGTGGCTTTATATGAGCCGTTGGATTGGGGAGATCACGAAGAAGAAGCTTCCATTGATTTGCGGGCGCAGATGTTTATTGAGAGGTTCTATGAAGAAATGAGAATGCAGAGGCAGGAATCGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

163

Amino Acids

19.47

Weight (kDa)

9.05

Isoelectric Point (pI)

54.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 138 - 162 8.5e-09 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68350
fragaria_vesca FvH4_4g27040
malus_domestica MD13G1039400.v1.1 MD16G1040300.v1.1
prunus_persica Prupe.1G313800_v2.0.a1
pyrus_communis pycom13g03390
rosa_chinensis RchiOBHm_Chr4g0434841
rosa_laevigata RLG00000006642
rosa_multiflora Rmu_sc0003726.1_g000004
rosa_roxburghii Rroxscaffold_5G00376050
rosa_rugosa Rorug04G0279300
rosa_samantha Rh4AG335400 Rh4BG343900 Rh4CG358300 Rh4DG337800
rosa_wichuraiana Rw4G029250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 424
AcuI CTGAAG 1 cut(s) 161
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 2 cut(s) 75, 347
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 3 cut(s) 92, 123, 305
AjiI CACGTC 1 cut(s) 253
AluBI AGCT 6 cut(s) 43, 136, 226, 294, 335, 410
AluI AGCT 6 cut(s) 43, 136, 226, 294, 335, 410
Alw26I GTCTC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 223
Asp700I GAANNNNTTC 1 cut(s) 243
AspLEI GCGC 1 cut(s) 430
BbvI GCAGC 1 cut(s) 235
BccI CCATC 1 cut(s) 308
BceAI ACGGC 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 243
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
BmgBI CACGTC 1 cut(s) 253
BpuEI CTTGAG 1 cut(s) 316
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 347
Bse1I ACTGG 1 cut(s) 175
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 2 cut(s) 75, 347
BseNI ACTGG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 235
BseYI CCCAGC 1 cut(s) 282
BsiSI CCGG 1 cut(s) 348
BslI CCNNNNNNNGG 2 cut(s) 75, 347
BsmAI GTCTC 1 cut(s) 243
BsmBI CGTCTC 1 cut(s) 243
BsmI GAATGC 1 cut(s) 471
Bsp143I GATC 1 cut(s) 394
BspACI CCGC 1 cut(s) 424
BspHI TCATGA 1 cut(s) 228
BsrI ACTGG 1 cut(s) 175
BssMI GATC 1 cut(s) 394
BstC8I GCNNGC 1 cut(s) 426
BstF5I GGATG 1 cut(s) 114
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 1 cut(s) 397
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 1 cut(s) 394
BstV1I GCAGC 1 cut(s) 235
BtrI CACGTC 1 cut(s) 253
BtsCI GGATG 1 cut(s) 114
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 1 cut(s) 369
Cac8I GCNNGC 1 cut(s) 426
CciI TCATGA 1 cut(s) 228
CfoI GCGC 1 cut(s) 430
Csp6I GTAC 1 cut(s) 256
CviAII CATG 1 cut(s) 229
CviJI RGCY 9 cut(s) 43, 136, 226, 243, 294, 335, 368, 379, 410
CviKI_1 RGCY 9 cut(s) 43, 136, 226, 243, 294, 335, 368, 379, 410
CviQI GTAC 1 cut(s) 256
DpnI GATC 1 cut(s) 396
DpnII GATC 1 cut(s) 394
Eco57I CTGAAG 1 cut(s) 161
Esp3I CGTCTC 1 cut(s) 243
FaeI CATG 1 cut(s) 232
FaiI YATR 4 cut(s) 230, 373, 375, 453
FatI CATG 1 cut(s) 228
FauI CCCGC 1 cut(s) 417
Fnu4HI GCNGC 1 cut(s) 224
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 224
GlaI GCGC 1 cut(s) 429
GluI GCNGC 1 cut(s) 224
GsaI CCCAGC 1 cut(s) 286
HapII CCGG 1 cut(s) 348
HhaI GCGC 1 cut(s) 430
Hin1II CATG 1 cut(s) 232
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HindIII AAGCTT 2 cut(s) 134, 408
HinfI GANTC 1 cut(s) 479
HpaII CCGG 1 cut(s) 348
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 2 cut(s) 30, 141
Hpy188III TCNNGA 4 cut(s) 46, 229, 248, 398
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 3 cut(s) 210, 254, 299
HpyCH4IV ACGT 2 cut(s) 252, 326
HpyCH4V TGCA 3 cut(s) 276, 362, 469
HpySE526I ACGT 2 cut(s) 252, 326
Hsp92II CATG 1 cut(s) 232
HspAI GCGC 1 cut(s) 428
Kzo9I GATC 1 cut(s) 394
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 6 cut(s) 59, 141, 188, 268, 361, 461
Lsp1109I GCAGC 1 cut(s) 235
MaeII ACGT 2 cut(s) 252, 326
MaeIII GTNAC 1 cut(s) 111
MalI GATC 1 cut(s) 396
MboI GATC 1 cut(s) 394
MboII GAAGA 8 cut(s) 52, 139, 154, 244, 323, 413, 416, 467
MluCI AATT 1 cut(s) 145
MmeI TCCRAC 3 cut(s) 213, 309, 363
MnlI CCTC 6 cut(s) 69, 196, 209, 213, 438, 465
MroXI GAANNNNTTC 1 cut(s) 243
MseI TTAA 1 cut(s) 487
MspI CCGG 1 cut(s) 348
Mva1269I GAATGC 1 cut(s) 471
NdeII GATC 1 cut(s) 394
NlaIII CATG 1 cut(s) 232
PagI TCATGA 1 cut(s) 228
PctI GAATGC 1 cut(s) 471
PdmI GAANNNNTTC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 479
PkrI GCNGC 1 cut(s) 225
PspFI CCCAGC 1 cut(s) 282
PsrI GAACNNNNNNTAC 2 cut(s) 248, 280
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 1 cut(s) 487
SatI GCNGC 1 cut(s) 224
Sau3AI GATC 1 cut(s) 394
SetI ASST 9 cut(s) 45, 138, 228, 255, 296, 329, 337, 412, 449
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
Sse9I AATT 1 cut(s) 145
SsiI CCGC 1 cut(s) 424
SspI AATATT 1 cut(s) 119
TaiI ACGT 2 cut(s) 255, 329
TaqI TCGA 3 cut(s) 5, 247, 260
TasI AATT 1 cut(s) 145
TatI WGTACW 1 cut(s) 255
TfiI GAWTC 1 cut(s) 479
Tru1I TTAA 1 cut(s) 487
Tru9I TTAA 1 cut(s) 487
TscAI CASTG 1 cut(s) 369
TseI GCWGC 1 cut(s) 223
TspDTI ATGAA 4 cut(s) 146, 194, 245, 468
TspRI CASTG 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.