AT1G68520

zinc finger

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
25708175 .. 25710989
2815 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G68520.1

Sequence Viewer

Length: 1221 bp
ATGATGAAAAGTTTGGCTAGTGCGGTTGGAGGGAAGACGGCGAGGGCATGTGATAGCTGCGTGAAGAGGCGGGCACGTTGGTATTGCGCAGCTGATGATGCCTTTCTTTGCCATGCTTGTGACGGTTCGGTCCACTCGGCAAACCCTCTTGCTCGTAGGCACGAGAGAGTTCGCTTGAAATCGGCTAGCGCCGGAAAGTATCGCCATGCCTCGCCGCCTCACCAAGCCACGTGGCATCAGGGATTTACACGTAAAGCTCGGACCCCACGTGGAGGCAAGAAGAGCCACACGATGGTTTTTCATGATCTTGTGCCGGAGATGAGCACGGAGGATCAAGCGGAGAGTTACGAGGTGGAAGAGCAGCTCATATTTGAGGTGCCGGTGATGAACTCGATGGTTGAGGAGCAATGCTTTAACCAATCCCTGGAGAAACAGAATGAGTTTCCAATGATGCCCTTAAGTTTCAAGAGTAGTGACGAAGAAGATGACGACAACGCTGAGAGTTGTCTGAATGGTTTGTTCCCAACCGACATGGAACTAGCTCAGTTCACAGCTGACGTGGAGACTCTACTCGGTGGAGGGGATCGAGAGTTTCATTCCATAGAAGAACTAGGGTTAGGTGAGATGTTAAAGATCGAAAAAGAGGAGGTGGAGGAAGAGGGAGTTGTGACAAGAGAAGTGCATGATCAAGATGAAGGTGATGAGACATCCCCATTTGAAATAAGCTTTGACTACGAGTACACACACAAGACCACATTCGATGAAGGAGAAGAAGATGAGAAAGAAGACGTGATGAAGAATGTGATGGAGATGGGAGTGAATGAGATGAGTGGTGGGATTAAAGAAGAGAAGAAGGAGAAGGCTCTTATGCTTAGATTGGACTATGAATCAGTCATTTCCACTTGGGGAGGCCAAGGGATCCCATGGACCGCCCGGGTGCCATCTGAAATAGACCTCGACATGGTTTGTTTCCCAACCCATACCATGGGTGAAAGTGGAGCAGAGGCTCATCATCACAACCACTTCCGCGGCCTAGGGTTACACCTAGGAGATGCTGGGGATGGAGGAAGAGAGGCTAGGGTTTCAAGATACCGAGAGAAAAGGAGGACAAGGTTGTTCTCCAAGAAGATAAGGTACGAGGTACGTAAATTGAATGCAGAGAAAAGGCCTCGCATGAAAGGAAGGTTCGTCAAGAGATCTTCAATTGGTGTTGCTCACTAA

Protein Analysis

406

Amino Acids

46.06

Weight (kDa)

5.47

Isoelectric Point (pI)

51.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 14 - 57 1.5e-06 B-box zinc finger
CCT PF06203 357 - 399 3.6e-17 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012185)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
Acc16I TGCGCA 1 cut(s) 88
AccB1I GGYRCC 2 cut(s) 376, 937
AccB7I CCANNNNNTGG 3 cut(s) 292, 424, 985
AccII CGCG 1 cut(s) 1029
AciI CCGC 7 cut(s) 23, 70, 215, 338, 930, 1027, 1029
AclWI GGATC 4 cut(s) 339, 591, 913, 926
AcvI CACGTG 2 cut(s) 231, 269
AfaI GTAC 3 cut(s) 740, 1136, 1143
AfiI CCNNNNNNNGG 5 cut(s) 272, 292, 424, 961, 985
AflII CTTAAG 1 cut(s) 457
AflIII ACRYGT 1 cut(s) 248
AgsI TTSAA 6 cut(s) 178, 466, 719, 1086, 1153, 1203
AjiI CACGTC 2 cut(s) 559, 790
AjnI CCWGG 1 cut(s) 423
AluBI AGCT 7 cut(s) 57, 92, 257, 364, 542, 554, 726
AluI AGCT 7 cut(s) 57, 92, 257, 364, 542, 554, 726
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 2 cut(s) 557, 698
AlwI GGATC 4 cut(s) 339, 591, 913, 926
Ama87I CYCGRG 1 cut(s) 933
AoxI GGCC 3 cut(s) 910, 1030, 1166
ApeKI GCWGC 3 cut(s) 57, 89, 361
AspA2I CCTAGG 2 cut(s) 1033, 1045
AspLEI GCGC 2 cut(s) 89, 191
AspS9I GGNCC 3 cut(s) 130, 261, 927
AsuC2I CCSGG 2 cut(s) 934, 935
AsuHPI GGTGA 5 cut(s) 212, 394, 632, 710, 1001
AsuNHI GCTAGC 1 cut(s) 185
AvaI CYCGRG 1 cut(s) 933
AvaII GGWCC 3 cut(s) 130, 261, 927
AvrII CCTAGG 2 cut(s) 1033, 1045
BaeGI GKGCMC 1 cut(s) 76
BamHI GGATCC 1 cut(s) 918
BanI GGYRCC 2 cut(s) 376, 937
BarI GAAGNNNNNNTAC 2 cut(s) 1118, 1150
BauI CACGAG 1 cut(s) 161
BbrPI CACGTG 2 cut(s) 231, 269
BbsI GAAGAC 2 cut(s) 41, 792
Bbv12I GWGCWC 1 cut(s) 326
BbvI GCAGC 3 cut(s) 44, 101, 373
BccI CCATC 6 cut(s) 286, 388, 799, 805, 949, 1055
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 425
BclI TGATCA 1 cut(s) 685
BcnI CCSGG 2 cut(s) 934, 935
BcoDI GTCTC 2 cut(s) 557, 698
BfaI CTAG 7 cut(s) 18, 186, 539, 611, 1034, 1046, 1077
BfoI RGCGCY 1 cut(s) 192
BfrI CTTAAG 1 cut(s) 457
BglII AGATCT 1 cut(s) 1196
BisI GCNGC 5 cut(s) 58, 90, 215, 362, 1030
BlnI CCTAGG 2 cut(s) 1033, 1045
BlsI GCNGC 5 cut(s) 59, 91, 216, 363, 1031
Bme1390I CCNGG 3 cut(s) 425, 934, 935
Bme18I GGWCC 3 cut(s) 130, 261, 927
BmeT110I CYCGRG 1 cut(s) 933
BmgBI CACGTC 2 cut(s) 559, 790
BmgT120I GGNCC 3 cut(s) 130, 261, 927
BmiI GGNNCC 4 cut(s) 263, 378, 920, 939
BmrFI CCNGG 3 cut(s) 425, 934, 935
BmsI GCATC 4 cut(s) 88, 244, 441, 1042
BmtI GCTAGC 1 cut(s) 189
BpiI GAAGAC 2 cut(s) 41, 792
BpmI CTGGAG 1 cut(s) 446
BpuMI CCSGG 2 cut(s) 934, 935
BsaAI YACGTR 4 cut(s) 231, 251, 269, 1145
BsaJI CCNNGG 8 cut(s) 423, 913, 923, 933, 984, 1027, 1033, 1045
Bsc4I CCNNNNNNNGG 5 cut(s) 272, 292, 424, 961, 985
Bse118I RCCGGY 1 cut(s) 379
Bse3DI GCAATG 1 cut(s) 413
BseBI CCWGG 1 cut(s) 425
BseDI CCNNGG 8 cut(s) 423, 913, 923, 933, 984, 1027, 1033, 1045
BseGI GGATG 2 cut(s) 707, 1066
BseLI CCNNNNNNNGG 5 cut(s) 272, 292, 424, 961, 985
BseMI GCAATG 1 cut(s) 413
BseMII CTCAG 2 cut(s) 489, 557
BseRI GAGGAG 2 cut(s) 416, 659
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 3 cut(s) 44, 101, 373
BseYI CCCAGC 1 cut(s) 1055
Bsh1236I CGCG 1 cut(s) 1029
BshFI GGCC 3 cut(s) 912, 1032, 1168
BshNI GGYRCC 2 cut(s) 376, 937
BsiHKAI GWGCWC 1 cut(s) 326
BsiHKCI CYCGRG 1 cut(s) 933
BsiSI CCGG 4 cut(s) 192, 314, 380, 934
BslI CCNNNNNNNGG 5 cut(s) 272, 292, 424, 961, 985
BsmAI GTCTC 2 cut(s) 557, 698
BsmI GAATGC 1 cut(s) 1159
BsnI GGCC 3 cut(s) 912, 1032, 1168
BsoBI CYCGRG 1 cut(s) 933
Bsp1286I GDGCHC 2 cut(s) 76, 326
Bsp143I GATC 7 cut(s) 304, 331, 583, 633, 685, 918, 1196
Bsp19I CCATGG 2 cut(s) 923, 984
BspACI CCGC 7 cut(s) 23, 70, 215, 338, 930, 1027, 1029
BspANI GGCC 3 cut(s) 912, 1032, 1168
BspCNI CTCAG 2 cut(s) 490, 556
BspFNI CGCG 1 cut(s) 1029
BspHI TCATGA 1 cut(s) 301
BspLI GGNNCC 4 cut(s) 263, 378, 920, 939
BspOI GCTAGC 1 cut(s) 189
BspPI GGATC 4 cut(s) 339, 591, 913, 926
BspQI GCTCTTC 2 cut(s) 275, 351
BspT107I GGYRCC 2 cut(s) 376, 937
BspTI CTTAAG 1 cut(s) 457
BsrDI GCAATG 1 cut(s) 413
BsrFI RCCGGY 1 cut(s) 379
BssAI RCCGGY 1 cut(s) 379
BssECI CCNNGG 8 cut(s) 423, 913, 923, 933, 984, 1027, 1033, 1045
BssMI GATC 7 cut(s) 304, 331, 583, 633, 685, 918, 1196
BssSI CACGAG 1 cut(s) 161
BssT1I CCWWGG 5 cut(s) 913, 923, 984, 1033, 1045
Bst2BI CACGAG 1 cut(s) 161
Bst2UI CCWGG 1 cut(s) 425
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 6 cut(s) 59, 275, 351, 651, 840, 1063
BstAFI CTTAAG 1 cut(s) 457
BstBAI YACGTR 4 cut(s) 231, 251, 269, 1145
BstC8I GCNNGC 2 cut(s) 72, 187
BstDEI CTNAG 3 cut(s) 498, 543, 872
BstDSI CCRYGG 3 cut(s) 923, 984, 1027
BstF5I GGATG 2 cut(s) 707, 1066
BstFNI CGCG 1 cut(s) 1029
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 2 cut(s) 89, 191
BstKTI GATC 7 cut(s) 307, 334, 586, 636, 688, 921, 1199
BstMAI GTCTC 2 cut(s) 557, 698
BstMBI GATC 7 cut(s) 304, 331, 583, 633, 685, 918, 1196
BstMWI GCNNNNNNNGC 2 cut(s) 98, 282
BstNI CCWGG 1 cut(s) 425
BstNSI RCATGY 1 cut(s) 51
BstSCI CCNGG 3 cut(s) 423, 932, 933
BstSLI GKGCMC 1 cut(s) 76
BstSNI TACGTA 1 cut(s) 1145
BstUI CGCG 1 cut(s) 1029
BstV1I GCAGC 3 cut(s) 44, 101, 373
BstV2I GAAGAC 2 cut(s) 41, 792
BstX2I RGATCY 2 cut(s) 918, 1196
BstYI RGATCY 2 cut(s) 918, 1196
BsuRI GGCC 3 cut(s) 912, 1032, 1168
BtgI CCRYGG 3 cut(s) 923, 984, 1027
BtrI CACGTC 2 cut(s) 559, 790
BtsCI GGATG 2 cut(s) 707, 1066
Cac8I GCNNGC 2 cut(s) 72, 187
CciI TCATGA 1 cut(s) 301
CfoI GCGC 2 cut(s) 89, 191
Cfr10I RCCGGY 1 cut(s) 379
Cfr13I GGNCC 3 cut(s) 130, 261, 927
Cfr42I CCGCGG 1 cut(s) 1030
Cfr9I CCCGGG 1 cut(s) 933
Csp6I GTAC 3 cut(s) 739, 1135, 1142
CspCI CAANNNNNGTGG 2 cut(s) 212, 247
CviQI GTAC 3 cut(s) 739, 1135, 1142
DdeI CTNAG 3 cut(s) 498, 543, 872
DpnI GATC 7 cut(s) 306, 333, 585, 635, 687, 920, 1198
DpnII GATC 7 cut(s) 304, 331, 583, 633, 685, 918, 1196
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
Eam1104I CTCTTC 6 cut(s) 59, 275, 351, 651, 840, 1063
EarI CTCTTC 6 cut(s) 59, 275, 351, 651, 840, 1063
Eco105I TACGTA 1 cut(s) 1145
Eco130I CCWWGG 5 cut(s) 913, 923, 984, 1033, 1045
Eco147I AGGCCT 1 cut(s) 1168
Eco47I GGWCC 3 cut(s) 130, 261, 927
Eco72I CACGTG 2 cut(s) 231, 269
Eco88I CYCGRG 1 cut(s) 933
EcoRII CCWGG 1 cut(s) 423
EcoT14I CCWWGG 5 cut(s) 913, 923, 984, 1033, 1045
ErhI CCWWGG 5 cut(s) 913, 923, 984, 1033, 1045
FauI CCCGC 1 cut(s) 63
FbaI TGATCA 1 cut(s) 685
Fnu4HI GCNGC 5 cut(s) 58, 90, 215, 362, 1030
FokI GGATG 2 cut(s) 694, 1073
Fsp4HI GCNGC 5 cut(s) 58, 90, 215, 362, 1030
FspBI CTAG 7 cut(s) 18, 186, 539, 611, 1034, 1046, 1077
FspI TGCGCA 1 cut(s) 88
GlaI GCGC 2 cut(s) 88, 190
GluI GCNGC 5 cut(s) 58, 90, 215, 362, 1030
GsaI CCCAGC 1 cut(s) 1059
GsuI CTGGAG 1 cut(s) 446
HaeII RGCGCY 1 cut(s) 192
HaeIII GGCC 3 cut(s) 912, 1032, 1168
HapII CCGG 4 cut(s) 192, 314, 380, 934
HhaI GCGC 2 cut(s) 89, 191
Hin6I GCGC 2 cut(s) 87, 189
HinP1I GCGC 2 cut(s) 87, 189
HindIII AAGCTT 1 cut(s) 724
HinfI GANTC 2 cut(s) 565, 887
HpaII CCGG 4 cut(s) 192, 314, 380, 934
HphI GGTGA 5 cut(s) 212, 394, 632, 710, 1001
Hpy166II GTNNAC 3 cut(s) 133, 549, 741
Hpy188I TCNGA 3 cut(s) 261, 510, 946
Hpy188III TCNNGA 6 cut(s) 302, 466, 587, 689, 1086, 1192
Hpy8I GTNNAC 3 cut(s) 133, 549, 741
HpyAV CCTTC 5 cut(s) 689, 758, 847, 853, 1176
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 7 cut(s) 76, 230, 250, 268, 558, 789, 1144
HpyCH4V TGCA 2 cut(s) 682, 1157
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 282
HpyF3I CTNAG 3 cut(s) 498, 543, 872
HpySE526I ACGT 7 cut(s) 76, 230, 250, 268, 558, 789, 1144
HspAI GCGC 2 cut(s) 87, 189
Ksp22I TGATCA 1 cut(s) 685
KspI CCGCGG 1 cut(s) 1030
Kzo9I GATC 7 cut(s) 304, 331, 583, 633, 685, 918, 1196
LguI GCTCTTC 2 cut(s) 275, 351
LmnI GCTCC 2 cut(s) 403, 998
LpnPI CCDG 8 cut(s) 205, 224, 327, 393, 410, 437, 947, 1041
Lsp1109I GCAGC 3 cut(s) 44, 101, 373
LweI GCATC 4 cut(s) 88, 244, 441, 1042
MaeI CTAG 7 cut(s) 18, 186, 539, 611, 1034, 1046, 1077
MaeII ACGT 7 cut(s) 76, 230, 250, 268, 558, 789, 1144
MaeIII GTNAC 5 cut(s) 119, 344, 473, 667, 1038
MalI GATC 7 cut(s) 306, 333, 585, 635, 687, 920, 1198
MboI GATC 7 cut(s) 304, 331, 583, 633, 685, 918, 1196
MfeI CAATTG 1 cut(s) 1203
MflI RGATCY 2 cut(s) 918, 1196
MhlI GDGCHC 2 cut(s) 76, 326
MluCI AATT 2 cut(s) 1148, 1203
MlyI GAGTC 1 cut(s) 559
MmeI TCCRAC 1 cut(s) 7
MseI TTAA 4 cut(s) 414, 458, 629, 840
MslI CAYNNNNRTG 1 cut(s) 117
MspA1I CMGCKG 3 cut(s) 92, 554, 1029
MspCI CTTAAG 1 cut(s) 457
MspI CCGG 4 cut(s) 192, 314, 380, 934
MspR9I CCNGG 3 cut(s) 425, 934, 935
MunI CAATTG 1 cut(s) 1203
Mva1269I GAATGC 1 cut(s) 1159
MvaI CCWGG 1 cut(s) 425
MvnI CGCG 1 cut(s) 1029
MwoI GCNNNNNNNGC 2 cut(s) 98, 282
NciI CCSGG 2 cut(s) 934, 935
NcoI CCATGG 2 cut(s) 923, 984
NdeII GATC 7 cut(s) 304, 331, 583, 633, 685, 918, 1196
NheI GCTAGC 1 cut(s) 185
NlaIV GGNNCC 4 cut(s) 263, 378, 920, 939
NmeAIII GCCGAG 1 cut(s) 116
NmuCI GTSAC 3 cut(s) 119, 473, 667
NsbI TGCGCA 1 cut(s) 88
NspI RCATGY 1 cut(s) 51
PagI TCATGA 1 cut(s) 301
PceI AGGCCT 1 cut(s) 1168
PciSI GCTCTTC 2 cut(s) 275, 351
PcsI WCGNNNNNNNCGW 1 cut(s) 265
PctI GAATGC 1 cut(s) 1159
PfeI GAWTC 1 cut(s) 887
PflMI CCANNNNNTGG 3 cut(s) 292, 424, 985
PkrI GCNGC 5 cut(s) 59, 91, 216, 363, 1031
PleI GAGTC 1 cut(s) 559
PmaCI CACGTG 2 cut(s) 231, 269
PmlI CACGTG 2 cut(s) 231, 269
PpsI GAGTC 1 cut(s) 559
Ppu21I YACGTR 4 cut(s) 231, 251, 269, 1145
Psp6I CCWGG 1 cut(s) 423
PspCI CACGTG 2 cut(s) 231, 269
PspFI CCCAGC 1 cut(s) 1055
PspGI CCWGG 1 cut(s) 423
PspN4I GGNNCC 4 cut(s) 263, 378, 920, 939
PspPI GGNCC 3 cut(s) 130, 261, 927
PsuI RGATCY 2 cut(s) 918, 1196
PvuII CAGCTG 2 cut(s) 92, 554
RsaI GTAC 3 cut(s) 740, 1136, 1143
RsaNI GTAC 3 cut(s) 739, 1135, 1142
RseI CAYNNNNRTG 1 cut(s) 117
SacII CCGCGG 1 cut(s) 1030
SapI GCTCTTC 2 cut(s) 275, 351
SaqAI TTAA 4 cut(s) 414, 458, 629, 840
SatI GCNGC 5 cut(s) 58, 90, 215, 362, 1030
Sau3AI GATC 7 cut(s) 304, 331, 583, 633, 685, 918, 1196
Sau96I GGNCC 3 cut(s) 130, 261, 927
SchI GAGTC 1 cut(s) 559
ScrFI CCNGG 3 cut(s) 425, 934, 935
SduI GDGCHC 2 cut(s) 76, 326
SfaNI GCATC 4 cut(s) 88, 244, 441, 1042
Sfr303I CCGCGG 1 cut(s) 1030
SgrBI CCGCGG 1 cut(s) 1030
SinI GGWCC 3 cut(s) 130, 261, 927
SmaI CCCGGG 1 cut(s) 935
SmiMI CAYNNNNRTG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 457
SmoI CTYRAG 1 cut(s) 457
SnaBI TACGTA 1 cut(s) 1145
Sse9I AATT 2 cut(s) 1148, 1203
SseBI AGGCCT 1 cut(s) 1168
SsiI CCGC 7 cut(s) 23, 70, 215, 338, 930, 1027, 1029
SspMI CTAG 7 cut(s) 18, 186, 539, 611, 1034, 1046, 1077
StuI AGGCCT 1 cut(s) 1168
StyD4I CCNGG 3 cut(s) 423, 932, 933
StyI CCWWGG 5 cut(s) 913, 923, 984, 1033, 1045
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 7 cut(s) 79, 233, 253, 271, 561, 792, 1147
TaqI TCGA 5 cut(s) 392, 586, 636, 759, 957
TaqII GACCGA 1 cut(s) 118
TasI AATT 2 cut(s) 1148, 1203
TatI WGTACW 1 cut(s) 738
TauI GCSGC 2 cut(s) 217, 1032
TfiI GAWTC 1 cut(s) 887
Tru1I TTAA 4 cut(s) 414, 458, 629, 840
Tru9I TTAA 4 cut(s) 414, 458, 629, 840
TseFI GTSAC 3 cut(s) 119, 473, 667
TseI GCWGC 3 cut(s) 57, 89, 361
Tsp45I GTSAC 3 cut(s) 119, 473, 667
TspDTI ATGAA 9 cut(s) 20, 290, 401, 584, 708, 777, 809, 900, 1190
TspGWI ACGGA 1 cut(s) 341
TspMI CCCGGG 1 cut(s) 933
Van91I CCANNNNNTGG 3 cut(s) 292, 424, 985
Vha464I CTTAAG 1 cut(s) 457
VpaK11BI GGWCC 3 cut(s) 130, 261, 927
XceI RCATGY 1 cut(s) 51
XmaI CCCGGG 1 cut(s) 933
XmaJI CCTAGG 2 cut(s) 1033, 1045
XspI CTAG 7 cut(s) 18, 186, 539, 611, 1034, 1046, 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.