Rorug04G0282900

Zinc finger protein CONSTANS-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012185
Physical Location & Seq
Forward (+)
45694287 .. 45695578
1292 bp
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UTR
Exon/CDS
Intron
Rorug04G0282900.1

Sequence Viewer

Length: 504 bp
ATGAGTTCTTATCATGTGTTCTTCCTCATCTATTTGCTCATCATGCTTATCATTCTGTTCTGCAATCTTGGAGCACATTCTGGTCCTTCAAACAAGTTTTTGTCTTCATTTCATGGAGCTTCTAGCAACCACTCAGCAACTATGGAATGTTCAGAAAAGGGTAACTCATCAACTCACAGAAAGCTTTTGTTTCATGGGAGCTGTGCAAATAGAGACATAAGCATCTCACAAAGCATAGACACCACGTCTGGGATTCCAAGATACATAGTACAGATTGTGAACATCTGTGTTAATTCTGGGTCATGTGCTGCTTCAAATATTCATCTCCACTGTGGTTGGTTTGCCTCAGCAAGAGTCATAAACCCAACCATCTTCAAGAGGCTCTCATTTGATGATTGCTTGGTCAATGGAGGCAAGCCTTTGAAGACCAGTCAGAGCATCAGTTTCACTTACTTTAACTCCTTTATGTACCCCCTTTCTTTCAAATCTGCCAAGTTTTGCTAA

Protein Analysis

167

Amino Acids

18.41

Weight (kDa)

9.11

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 71 - 167 7.8e-34 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25440 AT1G68520
fragaria_vesca FvH4_4g27390
malus_domestica MD13G1042200.v1.1 MD16G1043000.v1.1
prunus_persica Prupe.1G310900_v2.0.a1
pyrus_communis pycom13g03650 pycom16g03710
rosa_chinensis RchiOBHm_Chr4g0435191
rosa_laevigata RLG00000006610
rosa_multiflora Rmu_ssc0000339.1_g000030
rosa_roxburghii Rroxscaffold_5G00376410
rosa_rugosa Rorug04G0282900 Rorug04G0283000
rosa_samantha Rh4AG338700 Rh4BG346800 Rh4CG361400 Rh4DG341200
rosa_wichuraiana Rw4G029540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 270, 470
AfiI CCNNNNNNNGG 1 cut(s) 249
AgsI TTSAA 5 cut(s) 90, 315, 376, 424, 484
AhdI GACNNNNNGTC 1 cut(s) 244
AjiI CACGTC 1 cut(s) 246
AluBI AGCT 3 cut(s) 119, 184, 201
AluI AGCT 3 cut(s) 119, 184, 201
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 308
AspS9I GGNCC 1 cut(s) 83
AvaII GGWCC 1 cut(s) 83
BbsI GAAGAC 2 cut(s) 96, 431
Bbv12I GWGCWC 1 cut(s) 76
BbvCI CCTCAGC 1 cut(s) 346
BbvI GCAGC 1 cut(s) 295
BccI CCATC 1 cut(s) 377
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 1 cut(s) 123
BisI GCNGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 310
Bme18I GGWCC 1 cut(s) 83
BmeRI GACNNNNNGTC 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 83
BmsI GCATC 2 cut(s) 231, 447
BpiI GAAGAC 2 cut(s) 96, 431
Bpu10I CCTNAGC 1 cut(s) 346
BsaXI ACNNNNNCTCC 2 cut(s) 443, 473
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse1I ACTGG 1 cut(s) 429
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMII CTCAG 2 cut(s) 147, 360
BseNI ACTGG 1 cut(s) 429
BseXI GCAGC 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 76
BspCNI CTCAG 2 cut(s) 146, 359
BsrI ACTGG 1 cut(s) 429
Bst4CI ACNGT 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 416
BstDEI CTNAG 2 cut(s) 133, 346
BstMAI GTCTC 1 cut(s) 207
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 295
BstV2I GAAGAC 2 cut(s) 96, 431
BtrI CACGTC 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 328
Cac8I GCNNGC 1 cut(s) 416
Cfr13I GGNCC 1 cut(s) 83
Csp6I GTAC 2 cut(s) 269, 469
CspCI CAANNNNNGTGG 2 cut(s) 317, 352
CviAII CATG 5 cut(s) 14, 43, 113, 194, 303
CviJI RGCY 5 cut(s) 119, 184, 201, 382, 418
CviKI_1 RGCY 5 cut(s) 119, 184, 201, 382, 418
CviQI GTAC 2 cut(s) 269, 469
DdeI CTNAG 2 cut(s) 133, 346
DriI GACNNNNNGTC 1 cut(s) 244
Eam1105I GACNNNNNGTC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 83
FaeI CATG 5 cut(s) 17, 46, 116, 197, 306
FatI CATG 5 cut(s) 13, 42, 112, 193, 302
Fnu4HI GCNGC 1 cut(s) 309
Fsp4HI GCNGC 1 cut(s) 309
FspBI CTAG 1 cut(s) 123
GluI GCNGC 1 cut(s) 309
Hin1II CATG 5 cut(s) 17, 46, 116, 197, 306
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 2 cut(s) 253, 354
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 2 cut(s) 154, 435
Hpy188III TCNNGA 1 cut(s) 376
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 1 cut(s) 96
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 2 cut(s) 63, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 2 cut(s) 133, 346
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 5 cut(s) 17, 46, 116, 197, 306
LmnI GCTCC 3 cut(s) 71, 116, 198
LpnPI CCDG 4 cut(s) 66, 234, 282, 442
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 2 cut(s) 231, 447
MaeI CTAG 1 cut(s) 123
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 161
MboII GAAGA 4 cut(s) 13, 96, 364, 436
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 1 cut(s) 292
MlyI GAGTC 1 cut(s) 363
MnlI CCTC 4 cut(s) 35, 355, 372, 404
MseI TTAA 2 cut(s) 291, 456
MwoI GCNNNNNNNGC 1 cut(s) 43
NlaIII CATG 5 cut(s) 17, 46, 116, 197, 306
PfeI GAWTC 1 cut(s) 253
PkrI GCNGC 1 cut(s) 310
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
PspPI GGNCC 1 cut(s) 83
RsaI GTAC 2 cut(s) 270, 470
RsaNI GTAC 2 cut(s) 269, 469
SaqAI TTAA 2 cut(s) 291, 456
SatI GCNGC 1 cut(s) 309
Sau96I GGNCC 1 cut(s) 83
SchI GAGTC 1 cut(s) 363
SduI GDGCHC 1 cut(s) 76
SetI ASST 4 cut(s) 121, 186, 203, 248
SfaNI GCATC 2 cut(s) 231, 447
SinI GGWCC 1 cut(s) 83
Sse9I AATT 1 cut(s) 292
SspI AATATT 1 cut(s) 319
SspMI CTAG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 332
TaiI ACGT 1 cut(s) 248
TasI AATT 1 cut(s) 292
TatI WGTACW 1 cut(s) 268
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 2 cut(s) 291, 456
Tru9I TTAA 2 cut(s) 291, 456
TscAI CASTG 1 cut(s) 335
TseI GCWGC 1 cut(s) 308
TspDTI ATGAA 4 cut(s) 96, 101, 182, 311
TspRI CASTG 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 83
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.