Prupe.1G310900_v2.0.a1

Zinc finger protein CONSTANS-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012185
Physical Location & Seq
Forward (+)
30217941 .. 30220164
2224 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G310900.1

Sequence Viewer

Length: 1344 bp
ATGAGCTCCAACAAGAAAGTGGCAAACGCTGTCGGTGCCAAAACGGCAAGAGCGTGCGACAGCTGCATAAGAAAGAGAGCTCGCTGGTACTGTGCTGCCGACGATGCTTTTCTCTGCCAAGCCTGTGACTCCTCCGTACACTCCGCCAACCAGTTAGCTCGCAGACACGAAAGGGTTCTCTTGAAAACGGCGTCGTCGGTCAAACCCACCGATAAGGATGATCAAGTTTCTGTTTCGGACAACCCAGCAGCACCGTCGTGGCACGGTGGCTTCACGAGGAAGGCCCGGACTCCGAGGCAGGGGAAGCACAAATCCCAAGAAGGTGCCCGAAACCGGTTTCCTCAGGTGCCGGAAGTTGGGGCAGACGATAGCAACTCATATGACGAGGAAAACGAAGAAGATCAGCAGCAGCTTCTTTATAGGGTTCCCGTATTCGATCCCTTTGTTGCGGAGATGTGTACTGCTACCACTTCTGCTAATTCCAATGAAGAAGCAGTTGCTAATACTTGTGATGTTTCTAAAGTGAGCTCATCATCACCTAATTATAATCATAACGGTCGTGATGGGTTCCTGCTTCCCAGTGACATGGATCTTGCTGAGTTCGCGGCAGACGTGGATAGTATGTTGGGCAGGGGGCTCGAAGATGACGAGTGTTTTGGGATGGAAGGATTGGGGTTAATGGATTCTAAAGAAAATGAATCGAATTGTAGAGTAAAGCTTGAAGACGAGGAGGAGGAGGAAGAGGAGGAGGGGGGCACGGGAGGTGTCAATTTTATGGGGTGTGAATTAGGTGAGACGCCGGAGATTGATATGATGAGAGAGCCGTTTGTGTTGAACTTTGAAGACTATGATGACTCGCCGCAGTCGTGCGGCGAACAGGATGACAAACTGGGAGTGGGAATGATGGATACTACTTACAGTGGAGATCATCAACAACATGAGGAGGTGCATACGGGTGCAAGTAAAAGCGGCAAGAAGAAGGAGATATTTTTGAGGCTGGACTACGAGGCAGTGATTACAGCCTGGGATGGCTCTCCTTGGACCTCCGGTGGTCGCCCGGATTTCAGCTCCGAATGCTTGCCTGACTGCATGGGTGTATGTGGAACTGAACTTCATTACCCGTACGGAGATCTGAACGGGCTAGGGGTGCACCCGGCAATGGCGGACGGAGGGAGAGAGGCGAGGGTGTCAAGGTACAGAGAAAAGAGGAGGACGAGGCTGTTCTCCAAGAAAATAAGGTACGAAGTGCGGAAGCTGAATGCTGAGAAGAGGCCAAGAATGAAAGGGAGGTTTGTGAAGAGAGCATCCTTTGCAGGATCTGCTTTTCCTGTGCTTACCAAATGA

Protein Analysis

448

Amino Acids

49.55

Weight (kDa)

5.07

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25440 AT1G68520
fragaria_vesca FvH4_4g27390
malus_domestica MD13G1042200.v1.1 MD16G1043000.v1.1
prunus_persica Prupe.1G310900_v2.0.a1
pyrus_communis pycom13g03650 pycom16g03710
rosa_chinensis RchiOBHm_Chr4g0435191
rosa_laevigata RLG00000006610
rosa_multiflora Rmu_ssc0000339.1_g000030
rosa_roxburghii Rroxscaffold_5G00376410
rosa_rugosa Rorug04G0282900 Rorug04G0283000
rosa_samantha Rh4AG338700 Rh4BG346800 Rh4CG361400 Rh4DG341200
rosa_wichuraiana Rw4G029540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 546
AccB1I GGYRCC 3 cut(s) 35, 323, 346
AccII CGCG 1 cut(s) 605
AciI CCGC 8 cut(s) 144, 449, 605, 860, 870, 969, 1163, 1249
AclWI GGATC 3 cut(s) 431, 597, 1324
AcyI GRCGYC 2 cut(s) 191, 797
AfaI GTAC 6 cut(s) 89, 138, 460, 1124, 1196, 1241
AfiI CCNNNNNNNGG 4 cut(s) 299, 333, 356, 1159
AgeI ACCGGT 1 cut(s) 333
AgsI TTSAA 4 cut(s) 184, 722, 835, 842
AjiI CACGTC 1 cut(s) 613
AjnI CCWGG 1 cut(s) 1022
AleI CACNNNNGTG 1 cut(s) 256
AluBI AGCT 9 cut(s) 6, 63, 80, 158, 412, 528, 718, 1068, 1255
AluI AGCT 9 cut(s) 6, 63, 80, 158, 412, 528, 718, 1068, 1255
Alw21I GWGCWC 4 cut(s) 8, 82, 530, 1152
Alw26I GTCTC 1 cut(s) 788
Alw44I GTGCAC 1 cut(s) 1148
AlwI GGATC 3 cut(s) 431, 597, 1324
AlwNI CAGNNNCTG 1 cut(s) 1319
AoxI GGCC 2 cut(s) 282, 1271
ApaLI GTGCAC 1 cut(s) 1148
ApeKI GCWGC 5 cut(s) 63, 95, 248, 406, 409
ArsI GACNNNNNNTTYG 2 cut(s) 638, 670
AsiGI ACCGGT 1 cut(s) 333
Asp700I GAANNNNTTC 1 cut(s) 174
AspS9I GGNCC 2 cut(s) 283, 1041
AsuC2I CCSGG 3 cut(s) 286, 1058, 1154
AsuHPI GGTGA 2 cut(s) 528, 803
AvaII GGWCC 1 cut(s) 1041
AxyI CCTNAGG 1 cut(s) 342
BaeGI GKGCMC 3 cut(s) 328, 758, 1152
BanI GGYRCC 3 cut(s) 35, 323, 346
BanII GRGCYC 4 cut(s) 8, 82, 530, 639
BauI CACGAG 1 cut(s) 274
BbsI GAAGAC 2 cut(s) 729, 849
Bbv12I GWGCWC 4 cut(s) 8, 82, 530, 1152
BbvI GCAGC 5 cut(s) 50, 82, 260, 418, 421
BccI CCATC 4 cut(s) 557, 655, 898, 1022
BceAI ACGGC 3 cut(s) 60, 204, 808
BcgI CGANNNNNNTGC 4 cut(s) 237, 271, 619, 653
BciT130I CCWGG 1 cut(s) 1024
BciVI GTATCC 1 cut(s) 901
BclI TGATCA 1 cut(s) 220
BcnI CCSGG 3 cut(s) 286, 1058, 1154
BcoDI GTCTC 1 cut(s) 788
BfaI CTAG 1 cut(s) 1142
BfuI GTATCC 1 cut(s) 901
BglI GCCNNNNNGGC 1 cut(s) 44
BglII AGATCT 1 cut(s) 1129
BisI GCNGC 9 cut(s) 64, 96, 249, 407, 410, 606, 860, 871, 970
BlsI GCNGC 9 cut(s) 65, 97, 250, 408, 411, 607, 861, 872, 971
Bme1390I CCNGG 4 cut(s) 286, 1024, 1058, 1154
Bme18I GGWCC 1 cut(s) 1041
BmgBI CACGTC 1 cut(s) 613
BmgT120I GGNCC 2 cut(s) 283, 1041
BmiI GGNNCC 5 cut(s) 37, 325, 348, 426, 569
BmrFI CCNGG 4 cut(s) 286, 1024, 1058, 1154
BmrI ACTGGG 2 cut(s) 573, 899
BmsI GCATC 2 cut(s) 94, 1313
BmuI ACTGGG 2 cut(s) 573, 899
BpiI GAAGAC 2 cut(s) 729, 849
BpuMI CCSGG 3 cut(s) 286, 1058, 1154
BsaHI GRCGYC 2 cut(s) 191, 797
BsaJI CCNNGG 3 cut(s) 293, 1023, 1037
BsaWI WCCGGW 2 cut(s) 333, 1046
Bsc4I CCNNNNNNNGG 4 cut(s) 299, 333, 356, 1159
Bse118I RCCGGY 1 cut(s) 333
Bse1I ACTGG 3 cut(s) 151, 579, 894
Bse21I CCTNAGG 1 cut(s) 342
Bse3DI GCAATG 1 cut(s) 1164
BseBI CCWGG 1 cut(s) 1024
BseDI CCNNGG 3 cut(s) 293, 1023, 1037
BseGI GGATG 5 cut(s) 223, 666, 886, 1033, 1304
BseLI CCNNNNNNNGG 4 cut(s) 299, 333, 356, 1159
BseMI GCAATG 1 cut(s) 1164
BseMII CTCAG 3 cut(s) 356, 588, 1254
BseNI ACTGG 3 cut(s) 151, 579, 894
BseRI GAGGAG 8 cut(s) 121, 743, 746, 749, 758, 761, 956, 1222
BseSI GKGCMC 3 cut(s) 328, 758, 1152
BseXI GCAGC 5 cut(s) 50, 82, 260, 418, 421
BseYI CCCAGC 1 cut(s) 244
Bsh1236I CGCG 1 cut(s) 605
Bsh1285I CGRYCG 1 cut(s) 559
BshFI GGCC 2 cut(s) 284, 1273
BshNI GGYRCC 3 cut(s) 35, 323, 346
BshTI ACCGGT 1 cut(s) 333
BsiEI CGRYCG 1 cut(s) 559
BsiHKAI GWGCWC 4 cut(s) 8, 82, 530, 1152
BsiSI CCGG 7 cut(s) 286, 334, 350, 800, 1047, 1058, 1154
BsiWI CGTACG 1 cut(s) 1122
BslI CCNNNNNNNGG 4 cut(s) 299, 333, 356, 1159
BsmAI GTCTC 1 cut(s) 788
BsmBI CGTCTC 1 cut(s) 788
BsmI GAATGC 2 cut(s) 1079, 1264
BsnI GGCC 2 cut(s) 284, 1273
Bsp1286I GDGCHC 7 cut(s) 8, 82, 328, 530, 639, 758, 1152
Bsp143I GATC 7 cut(s) 220, 400, 436, 589, 925, 1129, 1316
BspACI CCGC 8 cut(s) 144, 449, 605, 860, 870, 969, 1163, 1249
BspANI GGCC 2 cut(s) 284, 1273
BspCNI CTCAG 3 cut(s) 355, 589, 1255
BspFNI CGCG 1 cut(s) 605
BspLI GGNNCC 5 cut(s) 37, 325, 348, 426, 569
BspPI GGATC 3 cut(s) 431, 597, 1324
BspT107I GGYRCC 3 cut(s) 35, 323, 346
BsrDI GCAATG 1 cut(s) 1164
BsrFI RCCGGY 1 cut(s) 333
BsrI ACTGG 3 cut(s) 151, 579, 894
BssAI RCCGGY 1 cut(s) 333
BssECI CCNNGG 3 cut(s) 293, 1023, 1037
BssMI GATC 7 cut(s) 220, 400, 436, 589, 925, 1129, 1316
BssNI GRCGYC 2 cut(s) 191, 797
BssSI CACGAG 1 cut(s) 274
BssT1I CCWWGG 1 cut(s) 1037
Bst2BI CACGAG 1 cut(s) 274
Bst2UI CCWGG 1 cut(s) 1024
Bst4CI ACNGT 5 cut(s) 92, 255, 266, 557, 920
Bst6I CTCTTC 3 cut(s) 735, 1262, 1292
BstACI GRCGYC 2 cut(s) 191, 797
BstAPI GCANNNNNTGC 2 cut(s) 1310, 1319
BstC8I GCNNGC 4 cut(s) 55, 82, 160, 1079
BstDEI CTNAG 3 cut(s) 342, 597, 1263
BstF5I GGATG 5 cut(s) 223, 666, 886, 1033, 1304
BstFNI CGCG 1 cut(s) 605
BstKTI GATC 7 cut(s) 223, 403, 439, 592, 928, 1132, 1319
BstMAI GTCTC 1 cut(s) 788
BstMBI GATC 7 cut(s) 220, 400, 436, 589, 925, 1129, 1316
BstMCI CGRYCG 1 cut(s) 559
BstNI CCWGG 1 cut(s) 1024
BstSCI CCNGG 4 cut(s) 284, 1022, 1056, 1152
BstSLI GKGCMC 3 cut(s) 328, 758, 1152
BstUI CGCG 1 cut(s) 605
BstV1I GCAGC 5 cut(s) 50, 82, 260, 418, 421
BstV2I GAAGAC 2 cut(s) 729, 849
BstX2I RGATCY 3 cut(s) 589, 1129, 1316
BstXI CCANNNNNNTGG 1 cut(s) 586
BstYI RGATCY 3 cut(s) 589, 1129, 1316
Bsu36I CCTNAGG 1 cut(s) 342
BsuI GTATCC 1 cut(s) 901
BsuRI GGCC 2 cut(s) 284, 1273
BtrI CACGTC 1 cut(s) 613
BtsCI GGATG 5 cut(s) 223, 666, 886, 1033, 1304
BtsI GCAGTG 1 cut(s) 1017
BtsIMutI CAGTG 3 cut(s) 586, 925, 1017
Cac8I GCNNGC 4 cut(s) 55, 82, 160, 1079
CaiI CAGNNNCTG 1 cut(s) 1319
Cfr10I RCCGGY 1 cut(s) 333
Cfr13I GGNCC 2 cut(s) 283, 1041
CseI GACGC 2 cut(s) 180, 805
Csp6I GTAC 6 cut(s) 88, 137, 459, 1123, 1195, 1240
CspAI ACCGGT 1 cut(s) 333
CviAII CATG 3 cut(s) 586, 938, 1090
CviQI GTAC 6 cut(s) 88, 137, 459, 1123, 1195, 1240
DdeI CTNAG 3 cut(s) 342, 597, 1263
DpnI GATC 7 cut(s) 222, 402, 438, 591, 927, 1131, 1318
DpnII GATC 7 cut(s) 220, 400, 436, 589, 925, 1129, 1316
Eam1104I CTCTTC 3 cut(s) 735, 1262, 1292
EarI CTCTTC 3 cut(s) 735, 1262, 1292
EciI GGCGGA 2 cut(s) 133, 1178
Ecl136II GAGCTC 3 cut(s) 6, 80, 528
Eco130I CCWWGG 1 cut(s) 1037
Eco24I GRGCYC 4 cut(s) 8, 82, 530, 639
Eco47I GGWCC 1 cut(s) 1041
Eco53kI GAGCTC 3 cut(s) 6, 80, 528
Eco81I CCTNAGG 1 cut(s) 342
EcoICRI GAGCTC 3 cut(s) 6, 80, 528
EcoRII CCWGG 1 cut(s) 1022
EcoT14I CCWWGG 1 cut(s) 1037
EcoT38I GRGCYC 4 cut(s) 8, 82, 530, 639
ErhI CCWWGG 1 cut(s) 1037
Esp3I CGTCTC 1 cut(s) 788
FaeI CATG 3 cut(s) 589, 941, 1093
FatI CATG 3 cut(s) 585, 937, 1089
FauNDI CATATG 1 cut(s) 379
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 9 cut(s) 64, 96, 249, 407, 410, 606, 860, 871, 970
FokI GGATG 5 cut(s) 230, 673, 893, 1040, 1291
FriOI GRGCYC 4 cut(s) 8, 82, 530, 639
Fsp4HI GCNGC 9 cut(s) 64, 96, 249, 407, 410, 606, 860, 871, 970
FspBI CTAG 1 cut(s) 1142
GluI GCNGC 9 cut(s) 64, 96, 249, 407, 410, 606, 860, 871, 970
GsaI CCCAGC 1 cut(s) 248
HaeIII GGCC 2 cut(s) 284, 1273
HapII CCGG 7 cut(s) 286, 334, 350, 800, 1047, 1058, 1154
HgaI GACGC 2 cut(s) 180, 805
Hin1I GRCGYC 2 cut(s) 191, 797
Hin1II CATG 3 cut(s) 589, 941, 1093
HindIII AAGCTT 1 cut(s) 716
HinfI GANTC 5 cut(s) 128, 289, 683, 698, 854
HpaII CCGG 7 cut(s) 286, 334, 350, 800, 1047, 1058, 1154
HphI GGTGA 2 cut(s) 528, 803
Hpy166II GTNNAC 3 cut(s) 139, 459, 1150
Hpy188I TCNGA 4 cut(s) 238, 294, 1072, 1134
Hpy188III TCNNGA 3 cut(s) 181, 274, 560
Hpy8I GTNNAC 3 cut(s) 139, 459, 1150
Hpy99I CGWCG 4 cut(s) 104, 196, 199, 259
HpyAV CCTTC 4 cut(s) 274, 314, 659, 973
HpyCH4III ACNGT 5 cut(s) 92, 255, 266, 557, 920
HpyCH4IV ACGT 1 cut(s) 612
HpyCH4V TGCA 6 cut(s) 66, 949, 959, 1089, 1150, 1313
HpyF3I CTNAG 3 cut(s) 342, 597, 1263
HpySE526I ACGT 1 cut(s) 612
Hsp92I GRCGYC 2 cut(s) 191, 797
Hsp92II CATG 3 cut(s) 589, 941, 1093
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 7 cut(s) 220, 400, 436, 589, 925, 1129, 1316
LmnI GCTCC 2 cut(s) 11, 1073
Lsp1109I GCAGC 5 cut(s) 50, 82, 260, 418, 421
LweI GCATC 2 cut(s) 94, 1313
MaeI CTAG 1 cut(s) 1142
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 2 cut(s) 125, 581
MalI GATC 7 cut(s) 222, 402, 438, 591, 927, 1131, 1318
MboI GATC 7 cut(s) 220, 400, 436, 589, 925, 1129, 1316
MflI RGATCY 3 cut(s) 589, 1129, 1316
MhlI GDGCHC 7 cut(s) 8, 82, 328, 530, 639, 758, 1152
MluCI AATT 5 cut(s) 478, 541, 703, 769, 785
MlyI GAGTC 3 cut(s) 122, 283, 848
MmeI TCCRAC 1 cut(s) 33
MroXI GAANNNNTTC 1 cut(s) 174
MseI TTAA 1 cut(s) 677
MslI CAYNNNNRTG 2 cut(s) 256, 954
MspA1I CMGCKG 1 cut(s) 63
MspI CCGG 7 cut(s) 286, 334, 350, 800, 1047, 1058, 1154
MspR9I CCNGG 4 cut(s) 286, 1024, 1058, 1154
Mva1269I GAATGC 2 cut(s) 1079, 1264
MvaI CCWGG 1 cut(s) 1024
MvnI CGCG 1 cut(s) 605
NciI CCSGG 3 cut(s) 286, 1058, 1154
NdeI CATATG 1 cut(s) 379
NdeII GATC 7 cut(s) 220, 400, 436, 589, 925, 1129, 1316
NlaIII CATG 3 cut(s) 589, 941, 1093
NlaIV GGNNCC 5 cut(s) 37, 325, 348, 426, 569
NmuCI GTSAC 2 cut(s) 125, 581
OliI CACNNNNGTG 1 cut(s) 256
PcsI WCGNNNNNNNCGW 5 cut(s) 50, 390, 609, 645, 863
PctI GAATGC 2 cut(s) 1079, 1264
PdmI GAANNNNTTC 1 cut(s) 174
PfeI GAWTC 2 cut(s) 683, 698
Pfl23II CGTACG 1 cut(s) 1122
PinAI ACCGGT 1 cut(s) 333
PkrI GCNGC 9 cut(s) 65, 97, 250, 408, 411, 607, 861, 872, 971
PleI GAGTC 3 cut(s) 122, 283, 848
PpsI GAGTC 3 cut(s) 122, 283, 848
PsiI TTATAA 1 cut(s) 546
Psp124BI GAGCTC 3 cut(s) 8, 82, 530
Psp6I CCWGG 1 cut(s) 1022
PspFI CCCAGC 1 cut(s) 244
PspGI CCWGG 1 cut(s) 1022
PspLI CGTACG 1 cut(s) 1122
PspN4I GGNNCC 5 cut(s) 37, 325, 348, 426, 569
PspPI GGNCC 2 cut(s) 283, 1041
PstNI CAGNNNCTG 1 cut(s) 1319
PsuI RGATCY 3 cut(s) 589, 1129, 1316
PvuII CAGCTG 1 cut(s) 63
RsaI GTAC 6 cut(s) 89, 138, 460, 1124, 1196, 1241
RsaNI GTAC 6 cut(s) 88, 137, 459, 1123, 1195, 1240
RseI CAYNNNNRTG 2 cut(s) 256, 954
SacI GAGCTC 3 cut(s) 8, 82, 530
SaqAI TTAA 1 cut(s) 677
SatI GCNGC 9 cut(s) 64, 96, 249, 407, 410, 606, 860, 871, 970
Sau3AI GATC 7 cut(s) 220, 400, 436, 589, 925, 1129, 1316
Sau96I GGNCC 2 cut(s) 283, 1041
SchI GAGTC 3 cut(s) 122, 283, 848
ScrFI CCNGG 4 cut(s) 286, 1024, 1058, 1154
SduI GDGCHC 7 cut(s) 8, 82, 328, 530, 639, 758, 1152
SfaNI GCATC 2 cut(s) 94, 1313
SinI GGWCC 1 cut(s) 1041
SmiMI CAYNNNNRTG 2 cut(s) 256, 954
Sse9I AATT 5 cut(s) 478, 541, 703, 769, 785
SsiI CCGC 8 cut(s) 144, 449, 605, 860, 870, 969, 1163, 1249
SspMI CTAG 1 cut(s) 1142
SstI GAGCTC 3 cut(s) 8, 82, 530
StyD4I CCNGG 4 cut(s) 284, 1022, 1056, 1152
StyI CCWWGG 1 cut(s) 1037
TaaI ACNGT 5 cut(s) 92, 255, 266, 557, 920
TaiI ACGT 1 cut(s) 615
TaqI TCGA 3 cut(s) 435, 639, 701
TaqII GACCGA 1 cut(s) 187
TasI AATT 5 cut(s) 478, 541, 703, 769, 785
TatI WGTACW 1 cut(s) 458
TauI GCSGC 4 cut(s) 608, 862, 873, 972
TfiI GAWTC 2 cut(s) 683, 698
Tru1I TTAA 1 cut(s) 677
Tru9I TTAA 1 cut(s) 677
TscAI CASTG 3 cut(s) 586, 925, 1017
TseFI GTSAC 2 cut(s) 125, 581
TseI GCWGC 5 cut(s) 63, 95, 248, 406, 409
Tsp45I GTSAC 2 cut(s) 125, 581
TspDTI ATGAA 4 cut(s) 501, 711, 1103, 1295
TspGWI ACGGA 3 cut(s) 124, 1140, 1182
TspRI CASTG 3 cut(s) 586, 925, 1017
VneI GTGCAC 1 cut(s) 1148
VpaK11BI GGWCC 1 cut(s) 1041
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 174
XspI CTAG 1 cut(s) 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.