Rmu_ssc0000339.1_g000030

Zinc finger protein CONSTANS-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000339.1
OG0012185
Physical Location & Seq
Forward (+)
111381 .. 112851
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000339.1_g000030.1.cds

Sequence Viewer

Length: 1356 bp
atgatttcaaacaagaaagcagctgcctctgcttctgcggcaacagcgaacgtctttggcggaaagacggcgagagcgtgtgacagctgtattaagaagagagctagatggtactgtgctgctgacgatgcttttctctgtcaagcgtgcgactcctccgtccactcggcgaaccagttggcacgcagacacgaacgtgtccggttgaaaactgcgtcgtcgattctcaagtcctcgaccaactccgggagttgtgataaatcagaagtgccatcatggcaccgagggttcacgaaaaaggcgcggacgccacggcacggcaagtccggtactcatcggaatcggtttcctcttgttccggagttcggagcggacgacctttcgtatgaggagaatgaggaggagcagcttgtgtatagagttcccgtatacgatccctttgttgcggagctctgcacttctcctaattccaacaccgtttccaacgatgttaatggaaacgaatccaaagcggtttcgaagccgaattactcccgtgtgggaagtggaaattcatcttcgtcgcatggttttgatcttcccagtgatatggatcttgcgaattttgcagctgatgttgatagcttattggggagagggctagatgacgataagtgttttggcatggaagggttggggttattggattgtcatgaaaaggaatccacaacaacggaggagggtagtaccggaagagtgaagcttgaagacgaggaagatgcttatatggcgtgccaagctgagacggagatcgatctgatgagggagcagtttgtgttgaactttgaagactacgacgactcgcctgcctcctgcgctgaagatgaggaggatgatgacaaattgggagtgacaatgagtcatgccgagatgaagagtagtagtgaagagcataaaagttgcaagaagaggaagatatttttgaggctggactacgatgctgtgattaccaaatgggatagcgaaagtaaaggatctccgtggacattcggagaaaggcccgatttggactccgattgcttgcctgactccatgggcacgtcaaatggagctgaattaattcattacccttatggagatttgaatggagtaattggattacatccggcaatgactgacggagggagggaggcgagggtatcaaggtacagagaaaagaggaggacgaggctgttctcgaagaaaataagatacgaagttcggaagctgaatgctgagaagaggcctagaatgaaaggaaggtttgtaaagagaacttcgtttgcagcttcaggatctacatttcctacgcttagtaaagaagtcatggacagctaa

Protein Analysis

451

Amino Acids

50.03

Weight (kDa)

5.78

Isoelectric Point (pI)

52.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25440 AT1G68520
fragaria_vesca FvH4_4g27390
malus_domestica MD13G1042200.v1.1 MD16G1043000.v1.1
prunus_persica Prupe.1G310900_v2.0.a1
pyrus_communis pycom13g03650 pycom16g03710
rosa_chinensis RchiOBHm_Chr4g0435191
rosa_laevigata RLG00000006610
rosa_multiflora Rmu_ssc0000339.1_g000030
rosa_roxburghii Rroxscaffold_5G00376410
rosa_rugosa Rorug04G0282900 Rorug04G0283000
rosa_samantha Rh4AG338700 Rh4BG346800 Rh4CG361400 Rh4DG341200
rosa_wichuraiana Rw4G029540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 279
AccBSI CCGCTC 1 cut(s) 371
AccI GTMKAC 1 cut(s) 429
AccII CGCG 1 cut(s) 304
AccIII TCCGGA 1 cut(s) 358
AciI CCGC 6 cut(s) 38, 60, 304, 371, 446, 512
AclWI GGATC 4 cut(s) 428, 600, 1021, 1321
AcsI RAATTY 2 cut(s) 550, 601
AcuI CTGAAG 2 cut(s) 879, 1293
AcyI GRCGYC 1 cut(s) 308
AfaI GTAC 4 cut(s) 113, 331, 727, 1187
AfiI CCNNNNNNNGG 3 cut(s) 246, 317, 365
AflIII ACRYGT 1 cut(s) 196
AgsI TTSAA 6 cut(s) 9, 208, 746, 820, 827, 1123
AhdI GACNNNNNGTC 1 cut(s) 897
AjiI CACGTC 1 cut(s) 1080
AleI CACNNNNGTG 1 cut(s) 195
Alw21I GWGCWC 1 cut(s) 453
Alw26I GTCTC 1 cut(s) 776
AlwI GGATC 4 cut(s) 428, 600, 1021, 1321
Aor13HI TCCGGA 1 cut(s) 358
AoxI GGCC 2 cut(s) 1037, 1262
ApeKI GCWGC 6 cut(s) 20, 23, 119, 406, 608, 1304
ApoI RAATTY 2 cut(s) 550, 601
AseI ATTAAT 1 cut(s) 1097
Asp700I GAANNNNTTC 1 cut(s) 1098
AspLEI GCGC 2 cut(s) 304, 857
AspS9I GGNCC 1 cut(s) 1038
AsuC2I CCSGG 1 cut(s) 247
AsuII TTCGAA 1 cut(s) 518
BaeGI GKGCMC 1 cut(s) 1079
BanI GGYRCC 1 cut(s) 279
BanII GRGCYC 1 cut(s) 453
BarI GAAGNNNNNNTAC 2 cut(s) 512, 544
BbsI GAAGAC 2 cut(s) 753, 834
Bbv12I GWGCWC 1 cut(s) 453
BbvI GCAGC 6 cut(s) 10, 32, 106, 418, 620, 1316
BccI CCATC 2 cut(s) 102, 280
BceAI ACGGC 3 cut(s) 84, 329, 334
BcgI CGANNNNNNTGC 4 cut(s) 740, 774, 827, 861
BcnI CCSGG 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 776
BfaI CTAG 3 cut(s) 105, 641, 1266
BglI GCCNNNNNGGC 1 cut(s) 277
BisI GCNGC 7 cut(s) 21, 24, 39, 120, 407, 609, 1305
BlsI GCNGC 7 cut(s) 22, 25, 40, 121, 408, 610, 1306
Bme1390I CCNGG 1 cut(s) 247
BmeRI GACNNNNNGTC 1 cut(s) 897
BmgBI CACGTC 1 cut(s) 1080
BmgT120I GGNCC 1 cut(s) 1038
BmiI GGNNCC 1 cut(s) 281
BmrFI CCNGG 1 cut(s) 247
BmrI ACTGGG 1 cut(s) 576
BmsI GCATC 3 cut(s) 118, 748, 967
BmuI ACTGGG 1 cut(s) 576
BpiI GAAGAC 2 cut(s) 753, 834
Bpu14I TTCGAA 1 cut(s) 518
BpuEI CTTGAG 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 247
Bsa29I ATCGAT 1 cut(s) 792
BsaBI GATNNNNATC 1 cut(s) 591
BsaHI GRCGYC 1 cut(s) 308
BsaJI CCNNGG 4 cut(s) 283, 311, 1019, 1071
BsaWI WCCGGW 4 cut(s) 201, 326, 358, 728
Bsc4I CCNNNNNNNGG 3 cut(s) 246, 317, 365
Bse1I ACTGG 2 cut(s) 175, 582
Bse3DI GCAATG 1 cut(s) 1155
Bse8I GATNNNNATC 1 cut(s) 591
BseAI TCCGGA 1 cut(s) 358
BseCI ATCGAT 1 cut(s) 792
BseDI CCNNGG 4 cut(s) 283, 311, 1019, 1071
BseGI GGATG 2 cut(s) 877, 1141
BseJI GATNNNNATC 1 cut(s) 591
BseLI CCNNNNNNNGG 3 cut(s) 246, 317, 365
BseMI GCAATG 1 cut(s) 1155
BseMII CTCAG 2 cut(s) 771, 1245
BseNI ACTGG 2 cut(s) 175, 582
BseRI GAGGAG 7 cut(s) 145, 404, 413, 416, 731, 881, 1213
BseSI GKGCMC 1 cut(s) 1079
BseXI GCAGC 6 cut(s) 10, 32, 106, 418, 620, 1316
BsgI GTGCAG 1 cut(s) 439
Bsh1236I CGCG 1 cut(s) 304
BshFI GGCC 2 cut(s) 1039, 1264
BshNI GGYRCC 1 cut(s) 279
BshVI ATCGAT 1 cut(s) 792
BsiHKAI GWGCWC 1 cut(s) 453
BsiSI CCGG 6 cut(s) 202, 246, 327, 359, 729, 1145
BslI CCNNNNNNNGG 3 cut(s) 246, 317, 365
BsmAI GTCTC 1 cut(s) 776
BsmBI CGTCTC 1 cut(s) 776
BsmI GAATGC 1 cut(s) 1255
BsnI GGCC 2 cut(s) 1039, 1264
Bsp119I TTCGAA 1 cut(s) 518
Bsp1286I GDGCHC 2 cut(s) 453, 1079
Bsp13I TCCGGA 1 cut(s) 358
Bsp143I GATC 7 cut(s) 433, 574, 592, 789, 793, 1013, 1313
Bsp19I CCATGG 1 cut(s) 1071
BspACI CCGC 6 cut(s) 38, 60, 304, 371, 446, 512
BspANI GGCC 2 cut(s) 1039, 1264
BspCNI CTCAG 2 cut(s) 772, 1246
BspDI ATCGAT 1 cut(s) 792
BspEI TCCGGA 1 cut(s) 358
BspFNI CGCG 1 cut(s) 304
BspHI TCATGA 1 cut(s) 691
BspLI GGNNCC 1 cut(s) 281
BspPI GGATC 4 cut(s) 428, 600, 1021, 1321
BspQI GCTCTTC 1 cut(s) 921
BspT104I TTCGAA 1 cut(s) 518
BspT107I GGYRCC 1 cut(s) 279
BsrBI CCGCTC 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 1155
BsrI ACTGG 2 cut(s) 175, 582
BssECI CCNNGG 4 cut(s) 283, 311, 1019, 1071
BssMI GATC 7 cut(s) 433, 574, 592, 789, 793, 1013, 1313
BssNAI GTATAC 1 cut(s) 430
BssNI GRCGYC 1 cut(s) 308
BssT1I CCWWGG 1 cut(s) 1071
Bst1107I GTATAC 1 cut(s) 430
Bst4CI ACNGT 2 cut(s) 116, 478
Bst6I CTCTTC 6 cut(s) 92, 727, 908, 921, 941, 1253
BstACI GRCGYC 1 cut(s) 308
BstBI TTCGAA 1 cut(s) 518
BstC8I GCNNGC 5 cut(s) 148, 184, 772, 846, 1061
BstDEI CTNAG 3 cut(s) 780, 1254, 1331
BstDSI CCRYGG 3 cut(s) 311, 1019, 1071
BstF5I GGATG 2 cut(s) 877, 1141
BstFNI CGCG 1 cut(s) 304
BstHHI GCGC 2 cut(s) 304, 857
BstKTI GATC 7 cut(s) 436, 577, 595, 792, 796, 1016, 1316
BstMAI GTCTC 1 cut(s) 776
BstMBI GATC 7 cut(s) 433, 574, 592, 789, 793, 1013, 1313
BstMWI GCNNNNNNNGC 9 cut(s) 29, 38, 44, 128, 277, 605, 767, 776, 854
BstSCI CCNGG 1 cut(s) 245
BstSLI GKGCMC 1 cut(s) 1079
BstUI CGCG 1 cut(s) 304
BstV1I GCAGC 6 cut(s) 10, 32, 106, 418, 620, 1316
BstV2I GAAGAC 2 cut(s) 753, 834
BstX2I RGATCY 3 cut(s) 592, 1013, 1313
BstXI CCANNNNNNTGG 1 cut(s) 589
BstYI RGATCY 3 cut(s) 592, 1013, 1313
BstZ17I GTATAC 1 cut(s) 430
Bsu15I ATCGAT 1 cut(s) 792
BsuRI GGCC 2 cut(s) 1039, 1264
BsuTUI ATCGAT 1 cut(s) 792
BtgI CCRYGG 3 cut(s) 311, 1019, 1071
BtrI CACGTC 1 cut(s) 1080
BtsCI GGATG 2 cut(s) 877, 1141
BtsIMutI CAGTG 1 cut(s) 589
Cac8I GCNNGC 5 cut(s) 148, 184, 772, 846, 1061
CciI TCATGA 1 cut(s) 691
CfoI GCGC 2 cut(s) 304, 857
Cfr13I GGNCC 1 cut(s) 1038
ClaI ATCGAT 1 cut(s) 792
CseI GACGC 2 cut(s) 204, 316
Csp6I GTAC 4 cut(s) 112, 330, 726, 1186
CviAII CATG 7 cut(s) 276, 566, 664, 692, 902, 1072, 1345
CviQI GTAC 4 cut(s) 112, 330, 726, 1186
DdeI CTNAG 3 cut(s) 780, 1254, 1331
DpnI GATC 7 cut(s) 435, 576, 594, 791, 795, 1015, 1315
DpnII GATC 7 cut(s) 433, 574, 592, 789, 793, 1013, 1313
DrdI GACNNNNNNGTC 1 cut(s) 158
DriI GACNNNNNGTC 1 cut(s) 897
DseDI GACNNNNNNGTC 1 cut(s) 158
Eam1104I CTCTTC 6 cut(s) 92, 727, 908, 921, 941, 1253
Eam1105I GACNNNNNGTC 1 cut(s) 897
EarI CTCTTC 6 cut(s) 92, 727, 908, 921, 941, 1253
EciI GGCGGA 1 cut(s) 75
Ecl136II GAGCTC 1 cut(s) 451
Eco130I CCWWGG 1 cut(s) 1071
Eco147I AGGCCT 1 cut(s) 1264
Eco24I GRGCYC 1 cut(s) 453
Eco53kI GAGCTC 1 cut(s) 451
Eco57I CTGAAG 2 cut(s) 879, 1293
EcoICRI GAGCTC 1 cut(s) 451
EcoT14I CCWWGG 1 cut(s) 1071
EcoT38I GRGCYC 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 1071
Esp3I CGTCTC 1 cut(s) 776
FaeI CATG 7 cut(s) 279, 569, 667, 695, 905, 1075, 1348
FatI CATG 7 cut(s) 275, 565, 663, 691, 901, 1071, 1344
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 7 cut(s) 21, 24, 39, 120, 407, 609, 1305
FokI GGATG 2 cut(s) 884, 1128
FriOI GRGCYC 1 cut(s) 453
Fsp4HI GCNGC 7 cut(s) 21, 24, 39, 120, 407, 609, 1305
FspBI CTAG 3 cut(s) 105, 641, 1266
GlaI GCGC 2 cut(s) 303, 856
GluI GCNGC 7 cut(s) 21, 24, 39, 120, 407, 609, 1305
HaeIII GGCC 2 cut(s) 1039, 1264
HapII CCGG 6 cut(s) 202, 246, 327, 359, 729, 1145
HgaI GACGC 2 cut(s) 204, 316
HhaI GCGC 2 cut(s) 304, 857
Hin1I GRCGYC 1 cut(s) 308
Hin1II CATG 7 cut(s) 279, 569, 667, 695, 905, 1075, 1348
Hin6I GCGC 2 cut(s) 302, 855
HinP1I GCGC 2 cut(s) 302, 855
HindIII AAGCTT 1 cut(s) 740
HinfI GANTC 9 cut(s) 152, 223, 340, 503, 701, 839, 898, 1049, 1067
HpaII CCGG 6 cut(s) 202, 246, 327, 359, 729, 1145
Hpy166II GTNNAC 4 cut(s) 163, 291, 430, 1023
Hpy188I TCNGA 7 cut(s) 265, 339, 368, 798, 1031, 1054, 1242
Hpy188III TCNNGA 5 cut(s) 292, 359, 692, 1216, 1311
Hpy8I GTNNAC 4 cut(s) 163, 291, 430, 1023
Hpy99I CGWCG 4 cut(s) 220, 223, 565, 839
HpyAV CCTTC 2 cut(s) 662, 1272
HpyCH4III ACNGT 2 cut(s) 116, 478
HpyCH4IV ACGT 3 cut(s) 51, 196, 1079
HpyCH4V TGCA 4 cut(s) 456, 608, 942, 1304
HpyF10VI GCNNNNNNNGC 9 cut(s) 29, 38, 44, 128, 277, 605, 767, 776, 854
HpyF3I CTNAG 3 cut(s) 780, 1254, 1331
HpySE526I ACGT 3 cut(s) 51, 196, 1079
Hsp92I GRCGYC 1 cut(s) 308
Hsp92II CATG 7 cut(s) 279, 569, 667, 695, 905, 1075, 1348
HspAI GCGC 2 cut(s) 302, 855
Kpn2I TCCGGA 1 cut(s) 358
Kzo9I GATC 7 cut(s) 433, 574, 592, 789, 793, 1013, 1313
LguI GCTCTTC 1 cut(s) 921
LmnI GCTCC 5 cut(s) 368, 403, 448, 805, 1088
Lsp1109I GCAGC 6 cut(s) 10, 32, 106, 418, 620, 1316
LweI GCATC 3 cut(s) 118, 748, 967
MaeI CTAG 3 cut(s) 105, 641, 1266
MaeII ACGT 3 cut(s) 51, 196, 1079
MaeIII GTNAC 2 cut(s) 80, 889
MalI GATC 7 cut(s) 435, 576, 594, 791, 795, 1015, 1315
MbiI CCGCTC 1 cut(s) 371
MboI GATC 7 cut(s) 433, 574, 592, 789, 793, 1013, 1313
MflI RGATCY 3 cut(s) 592, 1013, 1313
MhlI GDGCHC 2 cut(s) 453, 1079
MluCI AATT 8 cut(s) 466, 526, 550, 601, 881, 1094, 1098, 1131
MlyI GAGTC 5 cut(s) 146, 833, 907, 1043, 1061
MmeI TCCRAC 2 cut(s) 495, 507
MroI TCCGGA 1 cut(s) 358
MroXI GAANNNNTTC 1 cut(s) 1098
MseI TTAA 3 cut(s) 93, 492, 1097
MslI CAYNNNNRTG 1 cut(s) 195
MspA1I CMGCKG 3 cut(s) 23, 87, 611
MspI CCGG 6 cut(s) 202, 246, 327, 359, 729, 1145
MspR9I CCNGG 1 cut(s) 247
Mva1269I GAATGC 1 cut(s) 1255
MvnI CGCG 1 cut(s) 304
MwoI GCNNNNNNNGC 9 cut(s) 29, 38, 44, 128, 277, 605, 767, 776, 854
NciI CCSGG 1 cut(s) 247
NcoI CCATGG 1 cut(s) 1071
NdeII GATC 7 cut(s) 433, 574, 592, 789, 793, 1013, 1313
NlaIII CATG 7 cut(s) 279, 569, 667, 695, 905, 1075, 1348
NlaIV GGNNCC 1 cut(s) 281
NmeAIII GCCGAG 2 cut(s) 146, 931
NmuCI GTSAC 2 cut(s) 80, 889
NspV TTCGAA 1 cut(s) 518
OliI CACNNNNGTG 1 cut(s) 195
PagI TCATGA 1 cut(s) 691
PceI AGGCCT 1 cut(s) 1264
PciSI GCTCTTC 1 cut(s) 921
PcsI WCGNNNNNNNCGW 2 cut(s) 74, 372
PctI GAATGC 1 cut(s) 1255
PdmI GAANNNNTTC 1 cut(s) 1098
PfeI GAWTC 4 cut(s) 223, 340, 503, 701
PfoI TCCNGGA 1 cut(s) 245
PkrI GCNGC 7 cut(s) 22, 25, 40, 121, 408, 610, 1306
PleI GAGTC 5 cut(s) 146, 833, 906, 1043, 1061
PpsI GAGTC 5 cut(s) 146, 833, 906, 1043, 1061
PshBI ATTAAT 1 cut(s) 1097
Psp124BI GAGCTC 1 cut(s) 453
PspN4I GGNNCC 1 cut(s) 281
PspPI GGNCC 1 cut(s) 1038
PsuI RGATCY 3 cut(s) 592, 1013, 1313
PvuII CAGCTG 3 cut(s) 23, 87, 611
RsaI GTAC 4 cut(s) 113, 331, 727, 1187
RsaNI GTAC 4 cut(s) 112, 330, 726, 1186
RseI CAYNNNNRTG 1 cut(s) 195
SacI GAGCTC 1 cut(s) 453
SapI GCTCTTC 1 cut(s) 921
SaqAI TTAA 3 cut(s) 93, 492, 1097
SatI GCNGC 7 cut(s) 21, 24, 39, 120, 407, 609, 1305
Sau3AI GATC 7 cut(s) 433, 574, 592, 789, 793, 1013, 1313
Sau96I GGNCC 1 cut(s) 1038
SchI GAGTC 5 cut(s) 146, 833, 907, 1043, 1061
ScrFI CCNGG 1 cut(s) 247
SduI GDGCHC 2 cut(s) 453, 1079
SfaNI GCATC 3 cut(s) 118, 748, 967
SfuI TTCGAA 1 cut(s) 518
SmiMI CAYNNNNRTG 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 8 cut(s) 466, 526, 550, 601, 881, 1094, 1098, 1131
SseBI AGGCCT 1 cut(s) 1264
SsiI CCGC 6 cut(s) 38, 60, 304, 371, 446, 512
SspMI CTAG 3 cut(s) 105, 641, 1266
SstI GAGCTC 1 cut(s) 453
StuI AGGCCT 1 cut(s) 1264
StyD4I CCNGG 1 cut(s) 245
StyI CCWWGG 1 cut(s) 1071
TaaI ACNGT 2 cut(s) 116, 478
TaiI ACGT 3 cut(s) 54, 199, 1082
TaqI TCGA 5 cut(s) 221, 236, 518, 792, 1217
TasI AATT 8 cut(s) 466, 526, 550, 601, 881, 1094, 1098, 1131
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 4 cut(s) 223, 340, 503, 701
Tru1I TTAA 3 cut(s) 93, 492, 1097
Tru9I TTAA 3 cut(s) 93, 492, 1097
TscAI CASTG 1 cut(s) 589
TseFI GTSAC 2 cut(s) 80, 889
TseI GCWGC 6 cut(s) 20, 23, 119, 406, 608, 1304
Tsp45I GTSAC 2 cut(s) 80, 889
TspDTI ATGAA 5 cut(s) 543, 708, 926, 1091, 1286
TspGWI ACGGA 5 cut(s) 148, 728, 800, 1008, 1173
TspRI CASTG 1 cut(s) 589
VspI ATTAAT 1 cut(s) 1097
XapI RAATTY 2 cut(s) 550, 601
XmiI GTMKAC 1 cut(s) 429
XmnI GAANNNNTTC 1 cut(s) 1098
XspI CTAG 3 cut(s) 105, 641, 1266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.