AT1G68590

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012376
Physical Location & Seq
Reverse (-)
25757404 .. 25758411
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G68590.1

Sequence Viewer

Length: 501 bp
ATGATGTCATCAATGGCACTCTCTTCTACTTCCCTCTGCTCTTCTTTCATCTCTCAACATCCAAAACTCTCCATCACTGCTTCTCCTCCATTGTTCCATACCCAAACAACCAAACCCATCTCTGTAAAACGGAAAATCATAACTCTAGCAGCTCCAGAGACACTCACCGCTGAAACAGTCACCGGAATTGATACTTCCGACAACACTCCACAACAAACAATAAAGGTGGTGAAGCCAGATGAGAAATCAAGAGTGGTACTCAAGTTTGTGTGGATGGAGAAGAACATAGGATTAGGATTGGACCAACATGTACCTGGACATGGCACAATCCCACTTAGTCCTTACTTCTTCTGGCCTAGGAAAGATGCTTGGGAAGAGCTTAAGTCTACTCTTGAAGCTAAACCATGGATCTCTCAGAAGAAGATGATCATTCTTCTAAACCAAGCCACTGATATCATCAATCTCTGGCAACAAAGTGGCGGCAATTTAACTTCTCAATAA

Protein Analysis

166

Amino Acids

18.47

Weight (kDa)

9.27

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSRP-3_Ycf65 PF04839 112 - 158 1.3e-26 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68590 AT1G68590
fragaria_vesca FvH4_6g45210
malus_domestica MD09G1087300.v1.1 MD17G1075600.v1.1 MD17G1076100.v1.1
prunus_persica Prupe.3G238100_v2.0.a1
pyrus_communis pycom09g01270 pycom17g07670
rosa_chinensis RchiOBHm_Chr2g0162921
rosa_laevigata RLG00000021361
rosa_multiflora Rmu_sc0006129.1_g000003
rosa_roxburghii Rroxscaffold_2G00087710
rosa_rugosa Rorug02G0499300
rosa_samantha Rh2AG565300 Rh2BG578000 Rh2CG547700 Rh2DG588200
rosa_wichuraiana Rw2G046790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 386
AciI CCGC 2 cut(s) 168, 480
AclWI GGATC 1 cut(s) 416
AfaI GTAC 2 cut(s) 258, 312
AfiI CCNNNNNNNGG 1 cut(s) 320
AflII CTTAAG 1 cut(s) 380
AflIII ACRYGT 1 cut(s) 307
AgsI TTSAA 1 cut(s) 395
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 3 cut(s) 152, 379, 398
AluI AGCT 3 cut(s) 152, 379, 398
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 1 cut(s) 416
AoxI GGCC 1 cut(s) 353
ApeKI GCWGC 1 cut(s) 149
AspA2I CCTAGG 1 cut(s) 356
AspS9I GGNCC 1 cut(s) 301
AsuHPI GGTGA 3 cut(s) 157, 172, 241
AvaII GGWCC 1 cut(s) 301
AvrII CCTAGG 1 cut(s) 356
BaeI ACNNNNGTAYC 2 cut(s) 248, 281
BbvI GCAGC 1 cut(s) 161
BccI CCATC 3 cut(s) 80, 125, 268
BciT130I CCWGG 1 cut(s) 315
BclI TGATCA 1 cut(s) 426
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 2 cut(s) 146, 357
BfrI CTTAAG 1 cut(s) 380
BisI GCNGC 2 cut(s) 150, 481
BlnI CCTAGG 1 cut(s) 356
BlsI GCNGC 2 cut(s) 151, 482
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 1 cut(s) 301
BmgT120I GGNCC 1 cut(s) 301
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 1 cut(s) 355
BplI GAGNNNNNCTC 2 cut(s) 243, 275
BpmI CTGGAG 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 356, 404
BsaWI WCCGGW 1 cut(s) 182
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 1 cut(s) 320
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 2 cut(s) 356, 404
BseGI GGATG 2 cut(s) 58, 279
BseLI CCNNNNNNNGG 1 cut(s) 320
BseMII CTCAG 1 cut(s) 428
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 161
BshFI GGCC 1 cut(s) 355
BsiSI CCGG 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 320
BsmAI GTCTC 1 cut(s) 152
BsnI GGCC 1 cut(s) 355
Bsp143I GATC 2 cut(s) 408, 426
Bsp19I CCATGG 1 cut(s) 404
BspACI CCGC 2 cut(s) 168, 480
BspANI GGCC 1 cut(s) 355
BspCNI CTCAG 1 cut(s) 427
BspPI GGATC 1 cut(s) 416
BspQI GCTCTTC 2 cut(s) 46, 369
BspTI CTTAAG 1 cut(s) 380
BssECI CCNNGG 2 cut(s) 356, 404
BssMI GATC 2 cut(s) 408, 426
BssT1I CCWWGG 2 cut(s) 356, 404
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 178
Bst6I CTCTTC 3 cut(s) 28, 46, 369
BstAFI CTTAAG 1 cut(s) 380
BstDEI CTNAG 2 cut(s) 335, 414
BstDSI CCRYGG 1 cut(s) 404
BstF5I GGATG 2 cut(s) 58, 279
BstKTI GATC 2 cut(s) 411, 429
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 2 cut(s) 408, 426
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 408
BstYI RGATCY 1 cut(s) 408
BsuRI GGCC 1 cut(s) 355
BtgI CCRYGG 1 cut(s) 404
BtsCI GGATG 2 cut(s) 58, 279
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 75, 447
Cfr13I GGNCC 1 cut(s) 301
Csp6I GTAC 2 cut(s) 257, 311
CspCI CAANNNNNGTGG 2 cut(s) 207, 242
CviAII CATG 3 cut(s) 308, 320, 405
CviJI RGCY 6 cut(s) 152, 235, 355, 379, 398, 446
CviKI_1 RGCY 6 cut(s) 152, 235, 355, 379, 398, 446
CviQI GTAC 2 cut(s) 257, 311
DdeI CTNAG 2 cut(s) 335, 414
DpnI GATC 2 cut(s) 410, 428
DpnII GATC 2 cut(s) 408, 426
Eam1104I CTCTTC 3 cut(s) 28, 46, 369
EarI CTCTTC 3 cut(s) 28, 46, 369
Eco130I CCWWGG 2 cut(s) 356, 404
Eco32I GATATC 1 cut(s) 454
Eco47I GGWCC 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 313
EcoRV GATATC 1 cut(s) 454
EcoT14I CCWWGG 2 cut(s) 356, 404
ErhI CCWWGG 2 cut(s) 356, 404
FaeI CATG 3 cut(s) 311, 323, 408
FaiI YATR 6 cut(s) 99, 140, 287, 309, 321, 406
FatI CATG 3 cut(s) 307, 319, 404
FbaI TGATCA 1 cut(s) 426
FblI GTMKAC 1 cut(s) 386
Fnu4HI GCNGC 2 cut(s) 150, 481
FokI GGATG 2 cut(s) 45, 286
Fsp4HI GCNGC 2 cut(s) 150, 481
FspBI CTAG 2 cut(s) 146, 357
GluI GCNGC 2 cut(s) 150, 481
GsuI CTGGAG 1 cut(s) 138
HaeIII GGCC 1 cut(s) 355
HapII CCGG 1 cut(s) 183
Hin1II CATG 3 cut(s) 311, 323, 408
HpaII CCGG 1 cut(s) 183
HphI GGTGA 3 cut(s) 157, 172, 241
Hpy166II GTNNAC 1 cut(s) 387
Hpy188I TCNGA 2 cut(s) 199, 417
Hpy188III TCNNGA 3 cut(s) 155, 249, 392
Hpy8I GTNNAC 1 cut(s) 387
HpyCH4III ACNGT 1 cut(s) 178
HpyF3I CTNAG 2 cut(s) 335, 414
Hsp92II CATG 3 cut(s) 311, 323, 408
Ksp22I TGATCA 1 cut(s) 426
Kzo9I GATC 2 cut(s) 408, 426
LguI GCTCTTC 2 cut(s) 46, 369
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 7 cut(s) 168, 196, 249, 300, 327, 337, 451
Lsp1109I GCAGC 1 cut(s) 161
LweI GCATC 1 cut(s) 355
MaeI CTAG 2 cut(s) 146, 357
MaeIII GTNAC 1 cut(s) 178
MalI GATC 2 cut(s) 410, 428
MboI GATC 2 cut(s) 408, 426
MboII GAAGA 8 cut(s) 15, 33, 292, 340, 386, 425, 430, 433
MflI RGATCY 1 cut(s) 408
MluCI AATT 2 cut(s) 186, 484
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 2 cut(s) 44, 96
MseI TTAA 2 cut(s) 381, 488
MspA1I CMGCKG 1 cut(s) 170
MspCI CTTAAG 1 cut(s) 380
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 315
MvaI CCWGG 1 cut(s) 315
NcoI CCATGG 1 cut(s) 404
NdeII GATC 2 cut(s) 408, 426
NlaIII CATG 3 cut(s) 311, 323, 408
NmuCI GTSAC 1 cut(s) 178
NspI RCATGY 1 cut(s) 311
PciI ACATGT 1 cut(s) 307
PciSI GCTCTTC 2 cut(s) 46, 369
PkrI GCNGC 2 cut(s) 151, 482
PscI ACATGT 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspPI GGNCC 1 cut(s) 301
PsuI RGATCY 1 cut(s) 408
RsaI GTAC 2 cut(s) 258, 312
RsaNI GTAC 2 cut(s) 257, 311
SapI GCTCTTC 2 cut(s) 46, 369
SaqAI TTAA 2 cut(s) 381, 488
SatI GCNGC 2 cut(s) 150, 481
Sau3AI GATC 2 cut(s) 408, 426
Sau96I GGNCC 1 cut(s) 301
ScrFI CCNGG 1 cut(s) 315
SetI ASST 5 cut(s) 154, 228, 316, 381, 400
SfaNI GCATC 1 cut(s) 355
SinI GGWCC 1 cut(s) 301
SmlI CTYRAG 2 cut(s) 260, 380
SmoI CTYRAG 2 cut(s) 260, 380
Sse9I AATT 2 cut(s) 186, 484
SsiI CCGC 2 cut(s) 168, 480
SspMI CTAG 2 cut(s) 146, 357
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 2 cut(s) 356, 404
TaaI ACNGT 1 cut(s) 178
TasI AATT 2 cut(s) 186, 484
TauI GCSGC 1 cut(s) 483
Tru1I TTAA 2 cut(s) 381, 488
Tru9I TTAA 2 cut(s) 381, 488
TscAI CASTG 2 cut(s) 82, 454
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 1 cut(s) 37
TspGWI ACGGA 1 cut(s) 145
TspRI CASTG 2 cut(s) 82, 454
Vha464I CTTAAG 1 cut(s) 380
VpaK11BI GGWCC 1 cut(s) 301
XceI RCATGY 1 cut(s) 311
XcmI CCANNNNNNNNNTGG 1 cut(s) 311
XmaJI CCTAGG 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 386
XspI CTAG 2 cut(s) 146, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.