MD17G1076100.v1.1

30S ribosomal protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0012376
Physical Location & Seq
Forward (+)
6324420 .. 6325702
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1076100.v1.1.491

Sequence Viewer

Length: 600 bp
ATGTTATCCGTGGGAATGGGAATAAAGTGCAAGGAAAACCTGAACGCCGCCGTATTGCGGCTGAAGCTGCCGCAGCAAAAGCTTCTATTTGTCAACAATGTTAATCAACGAGCATTGAATTTGAAGCCGAAGACTTCTTCTTTCTCTGTTTCTCACTCGCTGCCAGAGCTGAGGCTCGGATACACTCGTGCCGCAAGAAATGTCAGGCTCTCCGCCGCCGCCGAGTCTCTGTTCGCCGAAGAAACGGCCACCGATGACGACAACACCGCCCCGGAAAAAAAAGGTCTCTTTTTTTCTCCTCCTCAGTATCTCTGTTGGAAGCTTGGAGTGGTGGTGAAGCCATTTGAGAAACCGAGGCTCGTATTGAAGTTTATTTGGATGGAAAAGAATATCGGCATTGCGCTGGACCAGATGATACCCGGCCACGGCTCCATCCCTCTCAGCCCCTATTACTTCTGGCCGAGGAGAGATGCGTGGGAGGAGCTCAAGGTCTTGCTCGAAAGCAAGCCCTGGATATCTCAGAAGCAGATGATTATCCTTCTCAATCAGGCTACCGATATCATCAATTTGTGGCAGCAGAGCGGCGGCAACCTGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PSRP-3_Ycf65

Protein Analysis

200

Amino Acids

22.58

Weight (kDa)

9.57

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSRP-3_Ycf65 PF04839 147 - 193 4.3e-26 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68590 AT1G68590
fragaria_vesca FvH4_6g45210
malus_domestica MD09G1087300.v1.1 MD17G1075600.v1.1 MD17G1076100.v1.1
prunus_persica Prupe.3G238100_v2.0.a1
pyrus_communis pycom09g01270 pycom17g07670
rosa_chinensis RchiOBHm_Chr2g0162921
rosa_laevigata RLG00000021361
rosa_multiflora Rmu_sc0006129.1_g000003
rosa_roxburghii Rroxscaffold_2G00087710
rosa_rugosa Rorug02G0499300
rosa_samantha Rh2AG565300 Rh2BG578000 Rh2CG547700 Rh2DG588200
rosa_wichuraiana Rw2G046790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 582
AcoI YGGCCR 3 cut(s) 246, 421, 458
AcsI RAATTY 1 cut(s) 118
AcuI CTGAAG 1 cut(s) 83
AfiI CCNNNNNNNGG 2 cut(s) 57, 425
AgsI TTSAA 3 cut(s) 118, 124, 367
AjnI CCWGG 2 cut(s) 509, 591
AluBI AGCT 5 cut(s) 67, 82, 169, 322, 484
AluI AGCT 5 cut(s) 67, 82, 169, 322, 484
Alw21I GWGCWC 1 cut(s) 486
Alw26I GTCTC 2 cut(s) 231, 290
AoxI GGCC 3 cut(s) 246, 421, 458
ApeKI GCWGC 4 cut(s) 67, 73, 160, 574
ApoI RAATTY 1 cut(s) 118
AspLEI GCGC 1 cut(s) 403
AspS9I GGNCC 1 cut(s) 406
AsuC2I CCSGG 2 cut(s) 272, 420
AsuHPI GGTGA 1 cut(s) 346
AvaII GGWCC 1 cut(s) 406
BaeI ACNNNNGTAYC 2 cut(s) 172, 205
BanII GRGCYC 1 cut(s) 486
BauI CACGAG 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 486
BbvCI CCTCAGC 1 cut(s) 170
BbvI GCAGC 4 cut(s) 54, 85, 147, 586
BccI CCATC 2 cut(s) 373, 440
BceAI ACGGC 3 cut(s) 35, 261, 442
BciT130I CCWGG 2 cut(s) 511, 593
BciVI GTATCC 1 cut(s) 173
BcnI CCSGG 2 cut(s) 272, 420
BcoDI GTCTC 2 cut(s) 231, 290
BfuI GTATCC 1 cut(s) 173
Bme1390I CCNGG 4 cut(s) 272, 420, 511, 593
Bme18I GGWCC 1 cut(s) 406
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 1 cut(s) 430
BmrFI CCNGG 4 cut(s) 272, 420, 511, 593
BmsI GCATC 1 cut(s) 460
BpiI GAAGAC 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 470
BpuMI CCSGG 2 cut(s) 272, 420
BsaBI GATNNNNATC 1 cut(s) 533
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 6 cut(s) 9, 270, 353, 424, 461, 509
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 425
Bse3DI GCAATG 1 cut(s) 396
Bse8I GATNNNNATC 1 cut(s) 533
BseBI CCWGG 2 cut(s) 511, 593
BseDI CCNNGG 6 cut(s) 9, 270, 353, 424, 461, 509
BseGI GGATG 2 cut(s) 384, 432
BseJI GATNNNNATC 1 cut(s) 533
BseLI CCNNNNNNNGG 2 cut(s) 57, 425
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 4 cut(s) 161, 317, 454, 533
BseRI GAGGAG 4 cut(s) 288, 291, 478, 494
BseXI GCAGC 4 cut(s) 54, 85, 147, 586
BshFI GGCC 3 cut(s) 248, 423, 460
BsiHKAI GWGCWC 1 cut(s) 486
BsiSI CCGG 2 cut(s) 272, 420
BslI CCNNNNNNNGG 2 cut(s) 57, 425
BsmAI GTCTC 2 cut(s) 231, 290
BsnI GGCC 3 cut(s) 248, 423, 460
Bso31I GGTCTC 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 486
BspANI GGCC 3 cut(s) 248, 423, 460
BspCNI CTCAG 4 cut(s) 162, 316, 453, 532
BspLI GGNNCC 1 cut(s) 430
BspTNI GGTCTC 1 cut(s) 290
BsrBI CCGCTC 1 cut(s) 582
BsrDI GCAATG 1 cut(s) 396
BssECI CCNNGG 6 cut(s) 9, 270, 353, 424, 461, 509
BssSI CACGAG 1 cut(s) 186
Bst2BI CACGAG 1 cut(s) 186
Bst2UI CCWGG 2 cut(s) 511, 593
BstC8I GCNNGC 1 cut(s) 506
BstDEI CTNAG 4 cut(s) 170, 303, 440, 519
BstDSI CCRYGG 2 cut(s) 9, 424
BstF5I GGATG 2 cut(s) 384, 432
BstHHI GCGC 1 cut(s) 403
BstMAI GTCTC 2 cut(s) 231, 290
BstMWI GCNNNNNNNGC 5 cut(s) 64, 67, 73, 79, 166
BstNI CCWGG 2 cut(s) 511, 593
BstSCI CCNGG 4 cut(s) 270, 418, 509, 591
BstV1I GCAGC 4 cut(s) 54, 85, 147, 586
BstV2I GAAGAC 1 cut(s) 137
BsuI GTATCC 1 cut(s) 173
BsuRI GGCC 3 cut(s) 248, 423, 460
BtgI CCRYGG 2 cut(s) 9, 424
BtsCI GGATG 2 cut(s) 384, 432
Cac8I GCNNGC 1 cut(s) 506
CfoI GCGC 1 cut(s) 403
Cfr13I GGNCC 1 cut(s) 406
CsiI ACCWGGT 1 cut(s) 591
DdeI CTNAG 4 cut(s) 170, 303, 440, 519
EaeI YGGCCR 3 cut(s) 246, 421, 458
EciI GGCGGA 1 cut(s) 202
Ecl136II GAGCTC 1 cut(s) 484
Eco24I GRGCYC 1 cut(s) 486
Eco31I GGTCTC 1 cut(s) 290
Eco32I GATATC 2 cut(s) 516, 559
Eco47I GGWCC 1 cut(s) 406
Eco53kI GAGCTC 1 cut(s) 484
Eco57I CTGAAG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 484
EcoRII CCWGG 2 cut(s) 509, 591
EcoRV GATATC 2 cut(s) 516, 559
EcoT38I GRGCYC 1 cut(s) 486
FokI GGATG 2 cut(s) 391, 419
FriOI GRGCYC 1 cut(s) 486
GlaI GCGC 1 cut(s) 402
HaeIII GGCC 3 cut(s) 248, 423, 460
HapII CCGG 2 cut(s) 272, 420
HhaI GCGC 1 cut(s) 403
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HindIII AAGCTT 2 cut(s) 80, 320
HinfI GANTC 1 cut(s) 224
HpaII CCGG 2 cut(s) 272, 420
HphI GGTGA 1 cut(s) 346
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 179, 522
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 548
HpyCH4V TGCA 1 cut(s) 30
HpyF10VI GCNNNNNNNGC 5 cut(s) 64, 67, 73, 79, 166
HpyF3I CTNAG 4 cut(s) 170, 303, 440, 519
HspAI GCGC 1 cut(s) 401
LmnI GCTCC 2 cut(s) 434, 481
Lsp1109I GCAGC 4 cut(s) 54, 85, 147, 586
LweI GCATC 1 cut(s) 460
MabI ACCWGGT 1 cut(s) 591
MbiI CCGCTC 1 cut(s) 582
MboII GAAGA 3 cut(s) 129, 142, 251
MhlI GDGCHC 1 cut(s) 486
MluCI AATT 2 cut(s) 118, 565
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 296
MnlI CCTC 7 cut(s) 165, 309, 312, 348, 447, 456, 472
MseI TTAA 1 cut(s) 102
MspI CCGG 2 cut(s) 272, 420
MspR9I CCNGG 4 cut(s) 272, 420, 511, 593
MvaI CCWGG 2 cut(s) 511, 593
MwoI GCNNNNNNNGC 5 cut(s) 64, 67, 73, 79, 166
NciI CCSGG 2 cut(s) 272, 420
NlaIV GGNNCC 1 cut(s) 430
NmeAIII GCCGAG 2 cut(s) 247, 486
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Psp124BI GAGCTC 1 cut(s) 486
Psp6I CCWGG 2 cut(s) 509, 591
PspGI CCWGG 2 cut(s) 509, 591
PspN4I GGNNCC 1 cut(s) 430
PspPI GGNCC 1 cut(s) 406
SacI GAGCTC 1 cut(s) 486
SaqAI TTAA 1 cut(s) 102
Sau96I GGNCC 1 cut(s) 406
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 4 cut(s) 272, 420, 511, 593
SduI GDGCHC 1 cut(s) 486
SetI ASST 9 cut(s) 42, 69, 84, 171, 286, 324, 486, 492, 594
SexAI ACCWGGT 1 cut(s) 591
SfaNI GCATC 1 cut(s) 460
SinI GGWCC 1 cut(s) 406
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
Sse9I AATT 2 cut(s) 118, 565
SstI GAGCTC 1 cut(s) 486
StyD4I CCNGG 4 cut(s) 270, 418, 509, 591
TaqI TCGA 1 cut(s) 498
TasI AATT 2 cut(s) 118, 565
TauI GCSGC 8 cut(s) 50, 61, 73, 194, 218, 221, 585, 588
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseI GCWGC 4 cut(s) 67, 73, 160, 574
VpaK11BI GGWCC 1 cut(s) 406
XapI RAATTY 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.