MD17G1075600.v1.1

30S ribosomal protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0012376
Physical Location & Seq
Forward (+)
6286661 .. 6289339
2679 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1075600.v1.1.491

Sequence Viewer

Length: 558 bp
ATGTTATCTGTGGGAATGGGAATCGAGTCCCAGGCAAACCTGAACGCCGCCGTATTGCGGCTGAAGCTGCCGCAGCAAAATCTTCTATATGTCAAGAGTGTTAATCAACGAGCATTGAATTTGAAGCAGAAGACTTCTTCTTTCTCTGTTTCTCACTCGATGCTGGAGCTGAGGCTCGGACATACTCGTGCCGCAAGAAGCGTCAGGCTCTCCGCCGCCGCCGAGTCTCTGGTCGCCGAAGAAACGGCCACCGCCGACACCGCCCCGGAAAAAGAGAAGCTCGGAGTGGTGGTGAAGCCATTTGAGAAACCGAGGCTGGTATTGAAGTTTATTTGGATGGAAAAGAATATCGGCATTGCGCTGGACCAGATGATACCTGGCCACGGCTCCATCCCTCTCAGCCCCTATTACTTCTGGCCGAGGAAAGATGCGTGGGAGGAGCTCAAGGTCTTGCTCGAAAGCAAGCCCTGGATATCTCAGAAACAGATGATTATTCTTCTCAATCAGGCTACCGATATCATCAATTTGTGGCAGCAGAGCGGCGGCAACCTGGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PSRP-3_Ycf65

Protein Analysis

186

Amino Acids

20.69

Weight (kDa)

9.62

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSRP-3_Ycf65 PF04839 133 - 179 2.1e-26 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68590 AT1G68590
fragaria_vesca FvH4_6g45210
malus_domestica MD09G1087300.v1.1 MD17G1075600.v1.1 MD17G1076100.v1.1
prunus_persica Prupe.3G238100_v2.0.a1
pyrus_communis pycom09g01270 pycom17g07670
rosa_chinensis RchiOBHm_Chr2g0162921
rosa_laevigata RLG00000021361
rosa_multiflora Rmu_sc0006129.1_g000003
rosa_roxburghii Rroxscaffold_2G00087710
rosa_rugosa Rorug02G0499300
rosa_samantha Rh2AG565300 Rh2BG578000 Rh2CG547700 Rh2DG588200
rosa_wichuraiana Rw2G046790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 540
AcoI YGGCCR 3 cut(s) 246, 379, 416
AcsI RAATTY 1 cut(s) 118
AcuI CTGAAG 1 cut(s) 83
AfiI CCNNNNNNNGG 2 cut(s) 57, 383
AgsI TTSAA 3 cut(s) 118, 124, 325
AjnI CCWGG 4 cut(s) 30, 376, 467, 549
AluBI AGCT 4 cut(s) 67, 169, 280, 442
AluI AGCT 4 cut(s) 67, 169, 280, 442
Alw21I GWGCWC 1 cut(s) 444
Alw26I GTCTC 1 cut(s) 231
AoxI GGCC 3 cut(s) 246, 379, 416
ApeKI GCWGC 3 cut(s) 67, 73, 532
ApoI RAATTY 1 cut(s) 118
AspLEI GCGC 1 cut(s) 361
AspS9I GGNCC 1 cut(s) 364
AsuC2I CCSGG 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 304
AvaII GGWCC 1 cut(s) 364
BalI TGGCCA 1 cut(s) 381
BanII GRGCYC 1 cut(s) 444
BauI CACGAG 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 444
BbvCI CCTCAGC 1 cut(s) 170
BbvI GCAGC 3 cut(s) 54, 85, 544
BccI CCATC 2 cut(s) 331, 398
BceAI ACGGC 3 cut(s) 35, 261, 400
BciT130I CCWGG 4 cut(s) 32, 378, 469, 551
BcnI CCSGG 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 231
Bme1390I CCNGG 5 cut(s) 32, 266, 378, 469, 551
Bme18I GGWCC 1 cut(s) 364
BmgT120I GGNCC 1 cut(s) 364
BmiI GGNNCC 1 cut(s) 388
BmrFI CCNGG 5 cut(s) 32, 266, 378, 469, 551
BmsI GCATC 2 cut(s) 150, 418
BpiI GAAGAC 1 cut(s) 137
BpmI CTGGAG 1 cut(s) 185
Bpu10I CCTNAGC 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 428
BpuMI CCSGG 1 cut(s) 266
BsaJI CCNNGG 6 cut(s) 30, 264, 311, 382, 419, 467
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 383
Bse3DI GCAATG 1 cut(s) 354
BseBI CCWGG 4 cut(s) 32, 378, 469, 551
BseDI CCNNGG 6 cut(s) 30, 264, 311, 382, 419, 467
BseGI GGATG 2 cut(s) 342, 390
BseLI CCNNNNNNNGG 2 cut(s) 57, 383
BseMI GCAATG 1 cut(s) 354
BseMII CTCAG 3 cut(s) 161, 412, 491
BseRI GAGGAG 1 cut(s) 452
BseXI GCAGC 3 cut(s) 54, 85, 544
BshFI GGCC 3 cut(s) 248, 381, 418
BsiHKAI GWGCWC 1 cut(s) 444
BsiSI CCGG 1 cut(s) 266
BslFI GGGAC 1 cut(s) 13
BslI CCNNNNNNNGG 2 cut(s) 57, 383
BsmAI GTCTC 1 cut(s) 231
BsmFI GGGAC 1 cut(s) 13
BsnI GGCC 3 cut(s) 248, 381, 418
Bsp1286I GDGCHC 1 cut(s) 444
BspANI GGCC 3 cut(s) 248, 381, 418
BspCNI CTCAG 3 cut(s) 162, 411, 490
BspLI GGNNCC 1 cut(s) 388
BsrBI CCGCTC 1 cut(s) 540
BsrDI GCAATG 1 cut(s) 354
BssECI CCNNGG 6 cut(s) 30, 264, 311, 382, 419, 467
BssSI CACGAG 1 cut(s) 186
Bst2BI CACGAG 1 cut(s) 186
Bst2UI CCWGG 4 cut(s) 32, 378, 469, 551
BstC8I GCNNGC 1 cut(s) 464
BstDEI CTNAG 3 cut(s) 170, 398, 477
BstDSI CCRYGG 1 cut(s) 382
BstF5I GGATG 2 cut(s) 342, 390
BstHHI GCGC 1 cut(s) 361
BstMAI GTCTC 1 cut(s) 231
BstMWI GCNNNNNNNGC 4 cut(s) 64, 67, 73, 260
BstNI CCWGG 4 cut(s) 32, 378, 469, 551
BstSCI CCNGG 5 cut(s) 30, 264, 376, 467, 549
BstV1I GCAGC 3 cut(s) 54, 85, 544
BstV2I GAAGAC 1 cut(s) 137
BsuRI GGCC 3 cut(s) 248, 381, 418
BtgI CCRYGG 1 cut(s) 382
BtsCI GGATG 2 cut(s) 342, 390
Cac8I GCNNGC 1 cut(s) 464
CfoI GCGC 1 cut(s) 361
Cfr13I GGNCC 1 cut(s) 364
CseI GACGC 1 cut(s) 190
DdeI CTNAG 3 cut(s) 170, 398, 477
EaeI YGGCCR 3 cut(s) 246, 379, 416
EciI GGCGGA 1 cut(s) 202
Ecl136II GAGCTC 1 cut(s) 442
Eco24I GRGCYC 1 cut(s) 444
Eco32I GATATC 2 cut(s) 474, 517
Eco47I GGWCC 1 cut(s) 364
Eco53kI GAGCTC 1 cut(s) 442
Eco57I CTGAAG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 442
EcoRII CCWGG 4 cut(s) 30, 376, 467, 549
EcoRV GATATC 2 cut(s) 474, 517
EcoT38I GRGCYC 1 cut(s) 444
FaiI YATR 3 cut(s) 88, 90, 183
FaqI GGGAC 1 cut(s) 13
FokI GGATG 2 cut(s) 349, 377
FriOI GRGCYC 1 cut(s) 444
GlaI GCGC 1 cut(s) 360
GsuI CTGGAG 1 cut(s) 185
HaeIII GGCC 3 cut(s) 248, 381, 418
HapII CCGG 1 cut(s) 266
HgaI GACGC 1 cut(s) 190
HhaI GCGC 1 cut(s) 361
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HinfI GANTC 3 cut(s) 21, 26, 224
HpaII CCGG 1 cut(s) 266
HphI GGTGA 1 cut(s) 304
Hpy188I TCNGA 3 cut(s) 179, 284, 480
Hpy188III TCNNGA 1 cut(s) 94
HpyF10VI GCNNNNNNNGC 4 cut(s) 64, 67, 73, 260
HpyF3I CTNAG 3 cut(s) 170, 398, 477
HspAI GCGC 1 cut(s) 359
LmnI GCTCC 3 cut(s) 166, 392, 439
Lsp1109I GCAGC 3 cut(s) 54, 85, 544
LweI GCATC 2 cut(s) 150, 418
MbiI CCGCTC 1 cut(s) 540
MboII GAAGA 5 cut(s) 74, 129, 142, 251, 488
MhlI GDGCHC 1 cut(s) 444
MlsI TGGCCA 1 cut(s) 381
MluCI AATT 2 cut(s) 118, 523
MluNI TGGCCA 1 cut(s) 381
MlyI GAGTC 2 cut(s) 35, 233
MnlI CCTC 5 cut(s) 165, 306, 405, 414, 430
Mox20I TGGCCA 1 cut(s) 381
MscI TGGCCA 1 cut(s) 381
MseI TTAA 1 cut(s) 102
MslI CAYNNNNRTG 1 cut(s) 186
Msp20I TGGCCA 1 cut(s) 381
MspI CCGG 1 cut(s) 266
MspR9I CCNGG 5 cut(s) 32, 266, 378, 469, 551
MvaI CCWGG 4 cut(s) 32, 378, 469, 551
MwoI GCNNNNNNNGC 4 cut(s) 64, 67, 73, 260
NciI CCSGG 1 cut(s) 266
NlaIV GGNNCC 1 cut(s) 388
NmeAIII GCCGAG 2 cut(s) 247, 444
PfeI GAWTC 1 cut(s) 21
PleI GAGTC 2 cut(s) 34, 232
PpsI GAGTC 2 cut(s) 34, 232
Psp124BI GAGCTC 1 cut(s) 444
Psp6I CCWGG 4 cut(s) 30, 376, 467, 549
PspGI CCWGG 4 cut(s) 30, 376, 467, 549
PspN4I GGNNCC 1 cut(s) 388
PspPI GGNCC 1 cut(s) 364
RseI CAYNNNNRTG 1 cut(s) 186
SacI GAGCTC 1 cut(s) 444
SaqAI TTAA 1 cut(s) 102
Sau96I GGNCC 1 cut(s) 364
SchI GAGTC 2 cut(s) 35, 233
ScrFI CCNGG 5 cut(s) 32, 266, 378, 469, 551
SduI GDGCHC 1 cut(s) 444
SetI ASST 8 cut(s) 42, 69, 171, 282, 379, 444, 450, 552
SfaNI GCATC 2 cut(s) 150, 418
SinI GGWCC 1 cut(s) 364
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 2 cut(s) 118, 523
SstI GAGCTC 1 cut(s) 444
StyD4I CCNGG 5 cut(s) 30, 264, 376, 467, 549
TaqI TCGA 3 cut(s) 24, 158, 456
TasI AATT 2 cut(s) 118, 523
TauI GCSGC 8 cut(s) 50, 61, 73, 194, 218, 221, 543, 546
TfiI GAWTC 1 cut(s) 21
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseI GCWGC 3 cut(s) 67, 73, 532
VpaK11BI GGWCC 1 cut(s) 364
XapI RAATTY 1 cut(s) 118
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.