Rorug02G0499300

30S ribosomal protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012376
Physical Location & Seq
Reverse (-)
63171793 .. 63173497
1705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0499300.1

Sequence Viewer

Length: 918 bp
ATGCGGGGTCATTCGGTACATGAGCCTCCCCCATTAGCAGAGAAGCTCACCGAAGACCCCGTGACATCAAAAACCGCACAAAGCACGGTGACATGCGTCTACCTTGCCAACATTGCAATGAATTGGCGGAAGGTCACCGTCATTTGGTGCAAGAATCTCATGAACCATTCCCTAAGCATAAGGATTGATAGTCTAGAAGGCGATTTTCATATAACTTGCAAAATCGACCTCAAGCCGTGGCATTTTTGGAGCAAAAAAGGGTACAAGTCATTCGAGGTTGAAGGGAATCATGTTGAAGTCTATTGGGACCTTCGATCTGCTAAATTCGTAGGAGGTCCAGAACCGAATCAGGACTTCTACGTTGCCCTTGTTTGCGATGAAGAAGTTGTGTTACTCTTGGGAGACATGAAGAAAAAGGCTTACAAGAGAACCAAATCAAGGCCATCAATGGTTGAGGCCGTTATGTACTACAAAAAAGAAAACGTGTTTGCCAAGAAAAGCTTTGCCACTAGGGTGAGATTCGACGAAAAGAGGAAAGAGCATGACATTGTTGTGGAGAGCTCAACTTCCGGGCTCAAAGACCCCGAAATGTGGATCAGCATAGACGGGATTGTGTTGGTTCATGTCAAGAATTTGCAATGGAAATTCAGAGGGAACCAGACTGTGATGGTGAACATGTTACCTGTCCAGGTTTTTTGGGATGTTCATGATTGGCTTTTCAGTAATCCAGGAACAGGACATGGTCTGTTTATTTTCAAGCCCGGGGCACCTGATTCGGAGAGCGATTACGACAGAGAAGGAGGCGAGTTCTGTGGAGACAGTGACAATAGCATTAGCAGTGCCTATTATTCAACTCAGAGTCTTAACACAACAGCTTCTGACTTCTGCTTGTTTCTTCATGCTTATAAGCTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PSRP-3_Ycf65

Protein Analysis

305

Amino Acids

34.97

Weight (kDa)

6.42

Isoelectric Point (pI)

31.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 26 - 303 1.7e-109 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68590 AT1G68590
fragaria_vesca FvH4_6g45210
malus_domestica MD09G1087300.v1.1 MD17G1075600.v1.1 MD17G1076100.v1.1
prunus_persica Prupe.3G238100_v2.0.a1
pyrus_communis pycom09g01270 pycom17g07670
rosa_chinensis RchiOBHm_Chr2g0162921
rosa_laevigata RLG00000021361
rosa_multiflora Rmu_sc0006129.1_g000003
rosa_roxburghii Rroxscaffold_2G00087710
rosa_rugosa Rorug02G0499300
rosa_samantha Rh2AG565300 Rh2BG578000 Rh2CG547700 Rh2DG588200
rosa_wichuraiana Rw2G046790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 906
AccB1I GGYRCC 1 cut(s) 766
AccI GTMKAC 1 cut(s) 99
AciI CCGC 3 cut(s) 4, 75, 127
AclWI GGATC 1 cut(s) 602
AcsI RAATTY 3 cut(s) 323, 631, 644
AfaI GTAC 3 cut(s) 18, 263, 467
AfiI CCNNNNNNNGG 4 cut(s) 144, 438, 591, 734
AflIII ACRYGT 2 cut(s) 483, 675
AgsI TTSAA 5 cut(s) 281, 296, 757, 852, 914
AjnI CCWGG 2 cut(s) 687, 727
AleI CACNNNNGTG 1 cut(s) 512
AluBI AGCT 5 cut(s) 46, 501, 561, 875, 910
AluI AGCT 5 cut(s) 46, 501, 561, 875, 910
Alw21I GWGCWC 1 cut(s) 563
Alw26I GTCTC 2 cut(s) 396, 810
AlwI GGATC 1 cut(s) 602
AlwNI CAGNNNCTG 1 cut(s) 878
Ama87I CYCGRG 1 cut(s) 761
AoxI GGCC 2 cut(s) 440, 456
ApoI RAATTY 3 cut(s) 323, 631, 644
AspS9I GGNCC 2 cut(s) 307, 335
AsuC2I CCSGG 3 cut(s) 571, 762, 763
AsuHPI GGTGA 5 cut(s) 40, 100, 127, 526, 682
AvaI CYCGRG 1 cut(s) 761
AvaII GGWCC 2 cut(s) 307, 335
BaeGI GKGCMC 1 cut(s) 769
BanI GGYRCC 1 cut(s) 766
BanII GRGCYC 2 cut(s) 563, 576
BarI GAAGNNNNNNTAC 2 cut(s) 375, 407
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 563
BccI CCATC 2 cut(s) 451, 661
BceAI ACGGC 2 cut(s) 220, 443
BcgI CGANNNNNNTGC 2 cut(s) 756, 790
BciT130I CCWGG 2 cut(s) 689, 729
BcnI CCSGG 3 cut(s) 571, 762, 763
BcoDI GTCTC 2 cut(s) 396, 810
BfaI CTAG 2 cut(s) 194, 510
Bme1390I CCNGG 5 cut(s) 571, 689, 729, 762, 763
Bme18I GGWCC 2 cut(s) 307, 335
BmeT110I CYCGRG 1 cut(s) 761
BmgT120I GGNCC 2 cut(s) 307, 335
BmiI GGNNCC 3 cut(s) 308, 656, 768
BmrFI CCNGG 5 cut(s) 571, 689, 729, 762, 763
BoxI GACNNNNGTC 1 cut(s) 95
BpiI GAAGAC 1 cut(s) 60
Bpu10I CCTNAGC 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 215
BpuMI CCSGG 3 cut(s) 571, 762, 763
BsaJI CCNNGG 3 cut(s) 236, 761, 762
Bsc4I CCNNNNNNNGG 4 cut(s) 144, 438, 591, 734
Bse3DI GCAATG 3 cut(s) 111, 123, 644
BseBI CCWGG 2 cut(s) 689, 729
BseDI CCNNGG 3 cut(s) 236, 761, 762
BseGI GGATG 1 cut(s) 706
BseLI CCNNNNNNNGG 4 cut(s) 144, 438, 591, 734
BseMI GCAATG 3 cut(s) 111, 123, 644
BseMII CTCAG 1 cut(s) 869
BseSI GKGCMC 1 cut(s) 769
BshFI GGCC 2 cut(s) 442, 458
BshNI GGYRCC 1 cut(s) 766
BsiHKAI GWGCWC 1 cut(s) 563
BsiHKCI CYCGRG 1 cut(s) 761
BsiSI CCGG 2 cut(s) 570, 762
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 4 cut(s) 144, 438, 591, 734
BsmAI GTCTC 2 cut(s) 396, 810
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 2 cut(s) 442, 458
BsoBI CYCGRG 1 cut(s) 761
Bsp1286I GDGCHC 3 cut(s) 563, 576, 769
Bsp143I GATC 2 cut(s) 314, 594
BspACI CCGC 3 cut(s) 4, 75, 127
BspANI GGCC 2 cut(s) 442, 458
BspCNI CTCAG 1 cut(s) 868
BspHI TCATGA 2 cut(s) 159, 706
BspLI GGNNCC 3 cut(s) 308, 656, 768
BspPI GGATC 1 cut(s) 602
BspT107I GGYRCC 1 cut(s) 766
BsrDI GCAATG 3 cut(s) 111, 123, 644
BssECI CCNNGG 3 cut(s) 236, 761, 762
BssMI GATC 2 cut(s) 314, 594
Bst2UI CCWGG 2 cut(s) 689, 729
Bst4CI ACNGT 4 cut(s) 88, 139, 664, 821
BstDEI CTNAG 2 cut(s) 173, 855
BstDSI CCRYGG 1 cut(s) 236
BstEII GGTNACC 1 cut(s) 133
BstF5I GGATG 1 cut(s) 706
BstKTI GATC 2 cut(s) 317, 597
BstMAI GTCTC 2 cut(s) 396, 810
BstMBI GATC 2 cut(s) 314, 594
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 2 cut(s) 689, 729
BstNSI RCATGY 2 cut(s) 96, 679
BstPAI GACNNNNGTC 1 cut(s) 95
BstPI GGTNACC 1 cut(s) 133
BstSCI CCNGG 5 cut(s) 569, 687, 727, 760, 761
BstSLI GKGCMC 1 cut(s) 769
BstV2I GAAGAC 1 cut(s) 60
BsuRI GGCC 2 cut(s) 442, 458
BtgI CCRYGG 1 cut(s) 236
BtgZI GCGATG 1 cut(s) 390
BtsCI GGATG 1 cut(s) 706
BtsI GCAGTG 1 cut(s) 844
BtsIMutI CAGTG 2 cut(s) 826, 844
CaiI CAGNNNCTG 1 cut(s) 878
CciI TCATGA 2 cut(s) 159, 706
Cfr13I GGNCC 2 cut(s) 307, 335
Cfr9I CCCGGG 1 cut(s) 761
CseI GACGC 1 cut(s) 85
Csp6I GTAC 3 cut(s) 17, 262, 466
CviQI GTAC 3 cut(s) 17, 262, 466
DdeI CTNAG 2 cut(s) 173, 855
DpnI GATC 2 cut(s) 316, 596
DpnII GATC 2 cut(s) 314, 594
EciI GGCGGA 1 cut(s) 142
Ecl136II GAGCTC 1 cut(s) 561
Eco24I GRGCYC 2 cut(s) 563, 576
Eco47I GGWCC 2 cut(s) 307, 335
Eco53kI GAGCTC 1 cut(s) 561
Eco88I CYCGRG 1 cut(s) 761
Eco91I GGTNACC 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 561
EcoO109I RGGNCCY 1 cut(s) 307
EcoO65I GGTNACC 1 cut(s) 133
EcoRII CCWGG 2 cut(s) 687, 727
EcoT38I GRGCYC 2 cut(s) 563, 576
FalI AAGNNNNNCTT 2 cut(s) 485, 517
FaqI GGGAC 1 cut(s) 320
FblI GTMKAC 1 cut(s) 99
FokI GGATG 1 cut(s) 713
FriOI GRGCYC 2 cut(s) 563, 576
FspBI CTAG 2 cut(s) 194, 510
HaeIII GGCC 2 cut(s) 442, 458
HapII CCGG 2 cut(s) 570, 762
HgaI GACGC 1 cut(s) 85
HindIII AAGCTT 2 cut(s) 499, 908
HinfI GANTC 6 cut(s) 154, 286, 346, 519, 773, 859
HpaII CCGG 2 cut(s) 570, 762
HphI GGTGA 5 cut(s) 40, 100, 127, 526, 682
Hpy166II GTNNAC 2 cut(s) 100, 673
Hpy188I TCNGA 4 cut(s) 650, 778, 858, 880
Hpy188III TCNNGA 6 cut(s) 160, 194, 338, 350, 628, 707
Hpy8I GTNNAC 2 cut(s) 100, 673
Hpy99I CGWCG 1 cut(s) 527
HpyAV CCTTC 5 cut(s) 124, 191, 275, 320, 791
HpyCH4III ACNGT 4 cut(s) 88, 139, 664, 821
HpyCH4IV ACGT 2 cut(s) 360, 483
HpyCH4V TGCA 4 cut(s) 116, 150, 219, 637
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 2 cut(s) 173, 855
HpySE526I ACGT 2 cut(s) 360, 483
Kzo9I GATC 2 cut(s) 314, 594
LmnI GCTCC 1 cut(s) 249
MaeI CTAG 2 cut(s) 194, 510
MaeII ACGT 2 cut(s) 360, 483
MaeIII GTNAC 6 cut(s) 61, 88, 133, 390, 678, 821
MalI GATC 2 cut(s) 316, 596
MboI GATC 2 cut(s) 314, 594
MboII GAAGA 4 cut(s) 65, 392, 421, 887
MhlI GDGCHC 3 cut(s) 563, 576, 769
MluCI AATT 4 cut(s) 121, 323, 631, 644
MlyI GAGTC 1 cut(s) 868
MnlI CCTC 8 cut(s) 36, 239, 268, 326, 448, 525, 644, 794
MseI TTAA 1 cut(s) 864
MslI CAYNNNNRTG 3 cut(s) 116, 512, 551
MspI CCGG 2 cut(s) 570, 762
MspR9I CCNGG 5 cut(s) 571, 689, 729, 762, 763
MvaI CCWGG 2 cut(s) 689, 729
MwoI GCNNNNNNNGC 1 cut(s) 113
NciI CCSGG 3 cut(s) 571, 762, 763
NdeII GATC 2 cut(s) 314, 594
NlaIV GGNNCC 3 cut(s) 308, 656, 768
NmuCI GTSAC 4 cut(s) 61, 88, 133, 821
NspI RCATGY 2 cut(s) 96, 679
OliI CACNNNNGTG 1 cut(s) 512
PagI TCATGA 2 cut(s) 159, 706
PciI ACATGT 1 cut(s) 675
PfeI GAWTC 5 cut(s) 154, 286, 346, 519, 773
PflFI GACNNNGTC 1 cut(s) 741
PfoI TCCNGGA 1 cut(s) 727
PleI GAGTC 1 cut(s) 867
PpsI GAGTC 1 cut(s) 867
PpuMI RGGWCCY 1 cut(s) 307
PscI ACATGT 1 cut(s) 675
PshAI GACNNNNGTC 1 cut(s) 95
PsiI TTATAA 1 cut(s) 906
Psp124BI GAGCTC 1 cut(s) 563
Psp5II RGGWCCY 1 cut(s) 307
Psp6I CCWGG 2 cut(s) 687, 727
PspEI GGTNACC 1 cut(s) 133
PspGI CCWGG 2 cut(s) 687, 727
PspN4I GGNNCC 3 cut(s) 308, 656, 768
PspPI GGNCC 2 cut(s) 307, 335
PspPPI RGGWCCY 1 cut(s) 307
PstNI CAGNNNCTG 1 cut(s) 878
PsyI GACNNNGTC 1 cut(s) 741
RsaI GTAC 3 cut(s) 18, 263, 467
RsaNI GTAC 3 cut(s) 17, 262, 466
RseI CAYNNNNRTG 3 cut(s) 116, 512, 551
SacI GAGCTC 1 cut(s) 563
SaqAI TTAA 1 cut(s) 864
Sau3AI GATC 2 cut(s) 314, 594
Sau96I GGNCC 2 cut(s) 307, 335
SchI GAGTC 1 cut(s) 868
ScrFI CCNGG 5 cut(s) 571, 689, 729, 762, 763
SduI GDGCHC 3 cut(s) 563, 576, 769
SinI GGWCC 2 cut(s) 307, 335
SmaI CCCGGG 1 cut(s) 763
SmiMI CAYNNNNRTG 3 cut(s) 116, 512, 551
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 4 cut(s) 121, 323, 631, 644
SsiI CCGC 3 cut(s) 4, 75, 127
SspMI CTAG 2 cut(s) 194, 510
SstI GAGCTC 1 cut(s) 563
StyD4I CCNGG 5 cut(s) 569, 687, 727, 760, 761
TaaI ACNGT 4 cut(s) 88, 139, 664, 821
TaiI ACGT 2 cut(s) 363, 486
TaqI TCGA 4 cut(s) 225, 273, 313, 522
TasI AATT 4 cut(s) 121, 323, 631, 644
TatI WGTACW 1 cut(s) 465
TfiI GAWTC 5 cut(s) 154, 286, 346, 519, 773
Tru1I TTAA 1 cut(s) 864
Tru9I TTAA 1 cut(s) 864
TscAI CASTG 2 cut(s) 826, 844
TseFI GTSAC 4 cut(s) 61, 88, 133, 821
Tsp45I GTSAC 4 cut(s) 61, 88, 133, 821
TspDTI ATGAA 8 cut(s) 134, 176, 197, 393, 422, 611, 695, 887
TspMI CCCGGG 1 cut(s) 761
TspRI CASTG 2 cut(s) 826, 844
Tth111I GACNNNGTC 1 cut(s) 741
VpaK11BI GGWCC 2 cut(s) 307, 335
XapI RAATTY 3 cut(s) 323, 631, 644
XbaI TCTAGA 1 cut(s) 193
XceI RCATGY 2 cut(s) 96, 679
XmaI CCCGGG 1 cut(s) 761
XmiI GTMKAC 1 cut(s) 99
XspI CTAG 2 cut(s) 194, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.