Prupe.3G238100_v2.0.a1

30S ribosomal protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012376
Physical Location & Seq
Reverse (-)
23308574 .. 23310506
1933 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G238100.1

Sequence Viewer

Length: 579 bp
ATGTTATCTATGGGTTTGGGGATCGAGTGTCAGGCAAACTTGAATGCCTCCGTCTTGAGGCAGAAGTTGCCTCAGCAAAAGCACAAGCTTTTATTGGTTAACAATAATCAGAGAGCATTGAATTTCAAGCCAAGGACCTCTAACTTCTCTGTTTCTCACTCGCTGTCGGAGTTGAAGCTCAGACTGACCCAAACCACAAGAAACGTCAAGCTCTCCGCCGCCGCTGAGTCTCTAGTTGCTGAAGAAACGGCCGCTGCTGATGACAACTTAACCACCGAAACGCCTCTGGAAAAAGAGAAGCTTGGAGTAGTTGTGAAGCCAATTGAGAAACCAAGGCTTGTATTGAAGTTCATTTGGATGGAAAAGAACATCGGCATCGCCCTCGATCAAATGATACCGGGTCATGGCTCCATCCCTCTCAGCCCCTATTATTTCTGGCCGAGGAAAGATGCCTGGGAGGAGCTCAAGGTCTTGCTCGAGAGCAAGCCTTGGATATCTCAAAAGCAGATGATTATTCTTCTCAACCAGGCTACTGATATCATCAATTTGTGGCAGCAGAGTGGTGGCAATTTGGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PSRP-3_Ycf65

Protein Analysis

193

Amino Acids

21.64

Weight (kDa)

9.35

Isoelectric Point (pI)

33.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68590 AT1G68590
fragaria_vesca FvH4_6g45210
malus_domestica MD09G1087300.v1.1 MD17G1075600.v1.1 MD17G1076100.v1.1
prunus_persica Prupe.3G238100_v2.0.a1
pyrus_communis pycom09g01270 pycom17g07670
rosa_chinensis RchiOBHm_Chr2g0162921
rosa_laevigata RLG00000021361
rosa_multiflora Rmu_sc0006129.1_g000003
rosa_roxburghii Rroxscaffold_2G00087710
rosa_rugosa Rorug02G0499300
rosa_samantha Rh2AG565300 Rh2BG578000 Rh2CG547700 Rh2DG588200
rosa_wichuraiana Rw2G046790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 216, 219, 222, 252
AclWI GGATC 1 cut(s) 29
AcoI YGGCCR 2 cut(s) 249, 437
AcsI RAATTY 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 261
AfiI CCNNNNNNNGG 2 cut(s) 57, 404
AgsI TTSAA 5 cut(s) 43, 121, 127, 175, 346
AjnI CCWGG 2 cut(s) 452, 525
AluBI AGCT 5 cut(s) 88, 178, 211, 301, 463
AluI AGCT 5 cut(s) 88, 178, 211, 301, 463
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 1 cut(s) 29
Ama87I CYCGRG 1 cut(s) 476
AoxI GGCC 2 cut(s) 249, 437
ApeKI GCWGC 2 cut(s) 254, 553
ApoI RAATTY 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 135
AsuC2I CCSGG 1 cut(s) 399
AvaI CYCGRG 1 cut(s) 476
AvaII GGWCC 1 cut(s) 135
BanII GRGCYC 1 cut(s) 465
Bbv12I GWGCWC 1 cut(s) 465
BbvCI CCTCAGC 1 cut(s) 72
BbvI GCAGC 2 cut(s) 241, 565
BccI CCATC 2 cut(s) 352, 419
BceAI ACGGC 1 cut(s) 264
BcgI CGANNNNNNTGC 2 cut(s) 364, 398
BciT130I CCWGG 2 cut(s) 454, 527
BcnI CCSGG 1 cut(s) 399
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 1 cut(s) 233
BisI GCNGC 5 cut(s) 219, 222, 252, 255, 554
BlsI GCNGC 5 cut(s) 220, 223, 253, 256, 555
Bme1390I CCNGG 3 cut(s) 399, 454, 527
Bme18I GGWCC 1 cut(s) 135
BmeT110I CYCGRG 1 cut(s) 476
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 409
BmrFI CCNGG 3 cut(s) 399, 454, 527
BmsI GCATC 2 cut(s) 384, 439
Bpu10I CCTNAGC 1 cut(s) 72
BpuEI CTTGAG 2 cut(s) 76, 449
BpuMI CCSGG 1 cut(s) 399
BsaJI CCNNGG 5 cut(s) 131, 332, 440, 453, 488
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 404
BseBI CCWGG 2 cut(s) 454, 527
BseDI CCNNGG 5 cut(s) 131, 332, 440, 453, 488
BseGI GGATG 2 cut(s) 363, 411
BseLI CCNNNNNNNGG 2 cut(s) 57, 404
BseMII CTCAG 4 cut(s) 86, 193, 216, 433
BseRI GAGGAG 1 cut(s) 473
BseX3I CGGCCG 1 cut(s) 249
BseXI GCAGC 2 cut(s) 241, 565
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 2 cut(s) 251, 439
BsiEI CGRYCG 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 465
BsiHKCI CYCGRG 1 cut(s) 476
BsiSI CCGG 1 cut(s) 398
BslI CCNNNNNNNGG 2 cut(s) 57, 404
BsmAI GTCTC 1 cut(s) 234
BsmI GAATGC 1 cut(s) 49
BsnI GGCC 2 cut(s) 251, 439
BsoBI CYCGRG 1 cut(s) 476
Bsp1286I GDGCHC 1 cut(s) 465
Bsp143I GATC 2 cut(s) 21, 385
BspACI CCGC 4 cut(s) 216, 219, 222, 252
BspANI GGCC 2 cut(s) 251, 439
BspCNI CTCAG 4 cut(s) 85, 192, 217, 432
BspLI GGNNCC 1 cut(s) 409
BspPI GGATC 1 cut(s) 29
BssECI CCNNGG 5 cut(s) 131, 332, 440, 453, 488
BssMI GATC 2 cut(s) 21, 385
BssT1I CCWWGG 3 cut(s) 131, 332, 488
Bst2UI CCWGG 2 cut(s) 454, 527
BstAPI GCANNNNNTGC 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 485
BstDEI CTNAG 4 cut(s) 72, 179, 225, 419
BstF5I GGATG 2 cut(s) 363, 411
BstKTI GATC 2 cut(s) 24, 388
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 2 cut(s) 21, 385
BstMCI CGRYCG 1 cut(s) 252
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstNI CCWGG 2 cut(s) 454, 527
BstSCI CCNGG 3 cut(s) 397, 452, 525
BstV1I GCAGC 2 cut(s) 241, 565
BstZI CGGCCG 1 cut(s) 249
BsuRI GGCC 2 cut(s) 251, 439
BtgZI GCGATG 1 cut(s) 361
BtsCI GGATG 2 cut(s) 363, 411
Cac8I GCNNGC 1 cut(s) 485
Cfr13I GGNCC 1 cut(s) 135
CviAII CATG 1 cut(s) 404
DdeI CTNAG 4 cut(s) 72, 179, 225, 419
DpnI GATC 2 cut(s) 23, 387
DpnII GATC 2 cut(s) 21, 385
EaeI YGGCCR 2 cut(s) 249, 437
EagI CGGCCG 1 cut(s) 249
EciI GGCGGA 1 cut(s) 205
Ecl136II GAGCTC 1 cut(s) 463
EclXI CGGCCG 1 cut(s) 249
Eco130I CCWWGG 3 cut(s) 131, 332, 488
Eco24I GRGCYC 1 cut(s) 465
Eco32I GATATC 2 cut(s) 495, 538
Eco47I GGWCC 1 cut(s) 135
Eco52I CGGCCG 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 463
Eco57I CTGAAG 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 476
EcoICRI GAGCTC 1 cut(s) 463
EcoO109I RGGNCCY 1 cut(s) 135
EcoRII CCWGG 2 cut(s) 452, 525
EcoRV GATATC 2 cut(s) 495, 538
EcoT14I CCWWGG 3 cut(s) 131, 332, 488
EcoT38I GRGCYC 1 cut(s) 465
ErhI CCWWGG 3 cut(s) 131, 332, 488
FaeI CATG 1 cut(s) 407
FaiI YATR 2 cut(s) 11, 405
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FatI CATG 1 cut(s) 403
Fnu4HI GCNGC 5 cut(s) 219, 222, 252, 255, 554
FokI GGATG 2 cut(s) 370, 398
FriOI GRGCYC 1 cut(s) 465
Fsp4HI GCNGC 5 cut(s) 219, 222, 252, 255, 554
FspBI CTAG 1 cut(s) 233
GluI GCNGC 5 cut(s) 219, 222, 252, 255, 554
HaeIII GGCC 2 cut(s) 251, 439
HapII CCGG 1 cut(s) 398
Hin1II CATG 1 cut(s) 407
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HindIII AAGCTT 2 cut(s) 86, 299
HinfI GANTC 1 cut(s) 227
HpaI GTTAAC 1 cut(s) 100
HpaII CCGG 1 cut(s) 398
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 3 cut(s) 111, 169, 182
Hpy188III TCNNGA 3 cut(s) 55, 287, 478
Hpy8I GTNNAC 1 cut(s) 100
HpyCH4IV ACGT 1 cut(s) 204
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpyF3I CTNAG 4 cut(s) 72, 179, 225, 419
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 1 cut(s) 407
KspAI GTTAAC 1 cut(s) 100
Kzo9I GATC 2 cut(s) 21, 385
LmnI GCTCC 2 cut(s) 413, 460
LpnPI CCDG 8 cut(s) 17, 272, 411, 421, 439, 466, 512, 539
Lsp1109I GCAGC 2 cut(s) 241, 565
LweI GCATC 2 cut(s) 384, 439
MaeI CTAG 1 cut(s) 233
MaeII ACGT 1 cut(s) 204
MalI GATC 2 cut(s) 23, 387
MboI GATC 2 cut(s) 21, 385
MboII GAAGA 2 cut(s) 254, 509
MfeI CAATTG 1 cut(s) 321
MhlI GDGCHC 1 cut(s) 465
MluCI AATT 4 cut(s) 121, 321, 544, 568
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 9 cut(s) 51, 58, 81, 148, 294, 392, 426, 435, 451
MseI TTAA 2 cut(s) 99, 269
MslI CAYNNNNRTG 1 cut(s) 356
MspA1I CMGCKG 2 cut(s) 224, 254
MspI CCGG 1 cut(s) 398
MspR9I CCNGG 3 cut(s) 399, 454, 527
MunI CAATTG 1 cut(s) 321
Mva1269I GAATGC 1 cut(s) 49
MvaI CCWGG 2 cut(s) 454, 527
MwoI GCNNNNNNNGC 1 cut(s) 67
NciI CCSGG 1 cut(s) 399
NdeII GATC 2 cut(s) 21, 385
NlaIII CATG 1 cut(s) 407
NlaIV GGNNCC 1 cut(s) 409
NmeAIII GCCGAG 1 cut(s) 465
PaeR7I CTCGAG 1 cut(s) 476
PctI GAATGC 1 cut(s) 49
PkrI GCNGC 5 cut(s) 220, 223, 253, 256, 555
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PpuMI RGGWCCY 1 cut(s) 135
Psp124BI GAGCTC 1 cut(s) 465
Psp5II RGGWCCY 1 cut(s) 135
Psp6I CCWGG 2 cut(s) 452, 525
PspGI CCWGG 2 cut(s) 452, 525
PspN4I GGNNCC 1 cut(s) 409
PspPI GGNCC 1 cut(s) 135
PspPPI RGGWCCY 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 356
SacI GAGCTC 1 cut(s) 465
SaqAI TTAA 2 cut(s) 99, 269
SatI GCNGC 5 cut(s) 219, 222, 252, 255, 554
Sau3AI GATC 2 cut(s) 21, 385
Sau96I GGNCC 1 cut(s) 135
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 3 cut(s) 399, 454, 527
SduI GDGCHC 1 cut(s) 465
SetI ASST 8 cut(s) 90, 140, 180, 207, 213, 303, 465, 471
SfaNI GCATC 2 cut(s) 384, 439
Sfr274I CTCGAG 1 cut(s) 476
SinI GGWCC 1 cut(s) 135
SlaI CTCGAG 1 cut(s) 476
SmiMI CAYNNNNRTG 1 cut(s) 356
SmlI CTYRAG 3 cut(s) 55, 464, 476
SmoI CTYRAG 3 cut(s) 55, 464, 476
Sse9I AATT 4 cut(s) 121, 321, 544, 568
SsiI CCGC 4 cut(s) 216, 219, 222, 252
SspMI CTAG 1 cut(s) 233
SstI GAGCTC 1 cut(s) 465
StyD4I CCNGG 3 cut(s) 397, 452, 525
StyI CCWWGG 3 cut(s) 131, 332, 488
TaiI ACGT 1 cut(s) 207
TaqI TCGA 3 cut(s) 24, 384, 477
TasI AATT 4 cut(s) 121, 321, 544, 568
TauI GCSGC 3 cut(s) 221, 224, 254
Tru1I TTAA 2 cut(s) 99, 269
Tru9I TTAA 2 cut(s) 99, 269
TseI GCWGC 2 cut(s) 254, 553
TspDTI ATGAA 1 cut(s) 340
TspGWI ACGGA 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 135
XapI RAATTY 1 cut(s) 121
XhoI CTCGAG 1 cut(s) 476
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.