FvH4_6g45210

30S ribosomal protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012376
Physical Location & Seq
Reverse (-)
34741328 .. 34742696
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45210.t1

Sequence Viewer

Length: 549 bp
ATGTTATCTATGGGCGTTGGGATCGAGTGCCAGGCAACCCTGAGTGCCTCCACCGTCGTCAGGCCGAAGCTGCCTCACCTCCTCAATAACAACACCTCTACATTCAAGCCCAGGAGGACCACCTCTCCTTCTTCTTCCTTTTTCATTTCCCACTCGCTGCCGCACCTCAAGCTCAGAACAGACTTCAAACTCTCCGCCGCCGCTGAAGCTCTAGTTGCCCAGGAAACCGCCGCCGATGACGTCAGCCCTGCAGACGACGGCACAGAGAAGCTTGGAGTGGTTGTGAAGCCGATGGAGAAACCAAGGCTTGTGTTGAAGTTCATTTGGATGGAAAAGAACATTGGCATTGCACTCGACCAAATGATTCCGGGCCATGGTTCCATCCCACTCAGCCCGTATTACTTCTGGCCGAGGAAAGATGCTTGGGAGGAGCTCAAGGTCTTGCTCGAGAGCAAGCCTTGGATATCTCAAAAGCAGATGATTATTCTTCTCAATCAGGCCACTGATATTATCAATTTGTGGCAGCAGAGTGGCGGCAATTTGGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PSRP-3_Ycf65

Protein Analysis

183

Amino Acids

20.21

Weight (kDa)

8.69

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSRP-3_Ycf65 PF04839 130 - 176 2e-26 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68590 AT1G68590
fragaria_vesca FvH4_6g45210
malus_domestica MD09G1087300.v1.1 MD17G1075600.v1.1 MD17G1076100.v1.1
prunus_persica Prupe.3G238100_v2.0.a1
pyrus_communis pycom09g01270 pycom17g07670
rosa_chinensis RchiOBHm_Chr2g0162921
rosa_laevigata RLG00000021361
rosa_multiflora Rmu_sc0006129.1_g000003
rosa_roxburghii Rroxscaffold_2G00087710
rosa_rugosa Rorug02G0499300
rosa_samantha Rh2AG565300 Rh2BG578000 Rh2CG547700 Rh2DG588200
rosa_wichuraiana Rw2G046790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 243
AciI CCGC 7 cut(s) 161, 195, 198, 201, 228, 231, 534
AclWI GGATC 1 cut(s) 29
AcoI YGGCCR 1 cut(s) 407
AcuI CTGAAG 1 cut(s) 225
AcyI GRCGYC 1 cut(s) 240
AfiI CCNNNNNNNGG 2 cut(s) 60, 374
AgsI TTSAA 3 cut(s) 106, 187, 316
AjnI CCWGG 3 cut(s) 30, 110, 219
AjuI GAANNNNNNNTTGG 2 cut(s) 324, 356
AluBI AGCT 5 cut(s) 70, 172, 209, 271, 433
AluI AGCT 5 cut(s) 70, 172, 209, 271, 433
Alw21I GWGCWC 1 cut(s) 435
AlwI GGATC 1 cut(s) 29
Ama87I CYCGRG 1 cut(s) 446
AoxI GGCC 4 cut(s) 62, 370, 407, 498
ApeKI GCWGC 3 cut(s) 70, 157, 523
AspS9I GGNCC 2 cut(s) 117, 370
AsuC2I CCSGG 1 cut(s) 369
AsuHPI GGTGA 1 cut(s) 68
AvaI CYCGRG 1 cut(s) 446
AvaII GGWCC 1 cut(s) 117
BanII GRGCYC 1 cut(s) 435
Bbv12I GWGCWC 1 cut(s) 435
BbvI GCAGC 3 cut(s) 57, 144, 535
BccI CCATC 3 cut(s) 286, 322, 389
BceAI ACGGC 1 cut(s) 274
BcgI CGANNNNNNTGC 2 cut(s) 334, 368
BciT130I CCWGG 3 cut(s) 32, 112, 221
BcnI CCSGG 1 cut(s) 369
BfaI CTAG 1 cut(s) 212
BfmI CTRYAG 1 cut(s) 249
BisI GCNGC 8 cut(s) 71, 158, 161, 198, 201, 231, 524, 535
BlsI GCNGC 8 cut(s) 72, 159, 162, 199, 202, 232, 525, 536
Bme1390I CCNGG 4 cut(s) 32, 112, 221, 369
Bme18I GGWCC 1 cut(s) 117
BmeT110I CYCGRG 1 cut(s) 446
BmgT120I GGNCC 2 cut(s) 117, 370
BmiI GGNNCC 1 cut(s) 379
BmrFI CCNGG 4 cut(s) 32, 112, 221, 369
BmsI GCATC 1 cut(s) 409
BpuEI CTTGAG 2 cut(s) 152, 419
BpuMI CCSGG 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 240
BsaJI CCNNGG 6 cut(s) 110, 219, 302, 373, 410, 458
BsaXI ACNNNNNCTCC 4 cut(s) 109, 139, 267, 297
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 374
Bse3DI GCAATG 1 cut(s) 345
BseBI CCWGG 3 cut(s) 32, 112, 221
BseDI CCNNGG 6 cut(s) 110, 219, 302, 373, 410, 458
BseGI GGATG 2 cut(s) 333, 381
BseLI CCNNNNNNNGG 2 cut(s) 60, 374
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 3 cut(s) 32, 187, 403
BseRI GAGGAG 2 cut(s) 71, 443
BseXI GCAGC 3 cut(s) 57, 144, 535
BshFI GGCC 4 cut(s) 64, 372, 409, 500
BsiHKAI GWGCWC 1 cut(s) 435
BsiHKCI CYCGRG 1 cut(s) 446
BsiSI CCGG 1 cut(s) 368
BslI CCNNNNNNNGG 2 cut(s) 60, 374
BsnI GGCC 4 cut(s) 64, 372, 409, 500
BsoBI CYCGRG 1 cut(s) 446
Bsp1286I GDGCHC 1 cut(s) 435
Bsp143I GATC 1 cut(s) 21
Bsp19I CCATGG 1 cut(s) 373
BspACI CCGC 7 cut(s) 161, 195, 198, 201, 228, 231, 534
BspANI GGCC 4 cut(s) 64, 372, 409, 500
BspCNI CTCAG 3 cut(s) 33, 186, 402
BspLI GGNNCC 1 cut(s) 379
BspMAI CTGCAG 1 cut(s) 253
BspPI GGATC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 345
BssECI CCNNGG 6 cut(s) 110, 219, 302, 373, 410, 458
BssMI GATC 1 cut(s) 21
BssNI GRCGYC 1 cut(s) 240
BssT1I CCWWGG 3 cut(s) 302, 373, 458
Bst2UI CCWGG 3 cut(s) 32, 112, 221
Bst4CI ACNGT 1 cut(s) 55
BstACI GRCGYC 1 cut(s) 240
BstC8I GCNNGC 1 cut(s) 455
BstDEI CTNAG 3 cut(s) 41, 173, 389
BstDSI CCRYGG 1 cut(s) 373
BstF5I GGATG 2 cut(s) 333, 381
BstKTI GATC 1 cut(s) 24
BstMBI GATC 1 cut(s) 21
BstMWI GCNNNNNNNGC 4 cut(s) 70, 169, 206, 215
BstNI CCWGG 3 cut(s) 32, 112, 221
BstSCI CCNGG 4 cut(s) 30, 110, 219, 367
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 3 cut(s) 57, 144, 535
BsuRI GGCC 4 cut(s) 64, 372, 409, 500
BtgI CCRYGG 1 cut(s) 373
BtsCI GGATG 2 cut(s) 333, 381
BtsIMutI CAGTG 1 cut(s) 501
Cac8I GCNNGC 1 cut(s) 455
Cfr13I GGNCC 2 cut(s) 117, 370
CviAII CATG 1 cut(s) 374
DdeI CTNAG 3 cut(s) 41, 173, 389
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
EaeI YGGCCR 1 cut(s) 407
EciI GGCGGA 1 cut(s) 184
Ecl136II GAGCTC 1 cut(s) 433
Eco130I CCWWGG 3 cut(s) 302, 373, 458
Eco24I GRGCYC 1 cut(s) 435
Eco32I GATATC 1 cut(s) 465
Eco47I GGWCC 1 cut(s) 117
Eco53kI GAGCTC 1 cut(s) 433
Eco57I CTGAAG 1 cut(s) 225
Eco88I CYCGRG 1 cut(s) 446
EcoICRI GAGCTC 1 cut(s) 433
EcoRII CCWGG 3 cut(s) 30, 110, 219
EcoRV GATATC 1 cut(s) 465
EcoT14I CCWWGG 3 cut(s) 302, 373, 458
EcoT38I GRGCYC 1 cut(s) 435
ErhI CCWWGG 3 cut(s) 302, 373, 458
FaeI CATG 1 cut(s) 377
FaiI YATR 2 cut(s) 11, 375
FatI CATG 1 cut(s) 373
Fnu4HI GCNGC 8 cut(s) 71, 158, 161, 198, 201, 231, 524, 535
FokI GGATG 2 cut(s) 340, 368
FriOI GRGCYC 1 cut(s) 435
Fsp4HI GCNGC 8 cut(s) 71, 158, 161, 198, 201, 231, 524, 535
FspBI CTAG 1 cut(s) 212
GluI GCNGC 8 cut(s) 71, 158, 161, 198, 201, 231, 524, 535
HaeIII GGCC 4 cut(s) 64, 372, 409, 500
HapII CCGG 1 cut(s) 368
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 1 cut(s) 377
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 1 cut(s) 364
HpaII CCGG 1 cut(s) 368
HphI GGTGA 1 cut(s) 68
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 1 cut(s) 448
Hpy99I CGWCG 2 cut(s) 59, 260
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 2 cut(s) 251, 350
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 169, 206, 215
HpyF3I CTNAG 3 cut(s) 41, 173, 389
HpySE526I ACGT 1 cut(s) 240
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 1 cut(s) 377
Kzo9I GATC 1 cut(s) 21
LmnI GCTCC 1 cut(s) 430
Lsp1109I GCAGC 3 cut(s) 57, 144, 535
LweI GCATC 1 cut(s) 409
MaeI CTAG 1 cut(s) 212
MaeII ACGT 1 cut(s) 240
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 3 cut(s) 123, 126, 479
MhlI GDGCHC 1 cut(s) 435
MluCI AATT 2 cut(s) 514, 538
MslI CAYNNNNRTG 1 cut(s) 326
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 4 cut(s) 32, 112, 221, 369
MvaI CCWGG 3 cut(s) 32, 112, 221
MwoI GCNNNNNNNGC 4 cut(s) 70, 169, 206, 215
NciI CCSGG 1 cut(s) 369
NcoI CCATGG 1 cut(s) 373
NdeII GATC 1 cut(s) 21
NlaIII CATG 1 cut(s) 377
NlaIV GGNNCC 1 cut(s) 379
NmeAIII GCCGAG 1 cut(s) 435
PaeR7I CTCGAG 1 cut(s) 446
PfeI GAWTC 1 cut(s) 364
PkrI GCNGC 8 cut(s) 72, 159, 162, 199, 202, 232, 525, 536
Psp124BI GAGCTC 1 cut(s) 435
Psp6I CCWGG 3 cut(s) 30, 110, 219
PspGI CCWGG 3 cut(s) 30, 110, 219
PspN4I GGNNCC 1 cut(s) 379
PspPI GGNCC 2 cut(s) 117, 370
PstI CTGCAG 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 326
SacI GAGCTC 1 cut(s) 435
SatI GCNGC 8 cut(s) 71, 158, 161, 198, 201, 231, 524, 535
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 2 cut(s) 117, 370
ScrFI CCNGG 4 cut(s) 32, 112, 221, 369
SduI GDGCHC 1 cut(s) 435
SfaNI GCATC 1 cut(s) 409
SfcI CTRYAG 1 cut(s) 249
Sfr274I CTCGAG 1 cut(s) 446
SinI GGWCC 1 cut(s) 117
SlaI CTCGAG 1 cut(s) 446
SmiMI CAYNNNNRTG 1 cut(s) 326
SmlI CTYRAG 3 cut(s) 167, 434, 446
SmoI CTYRAG 3 cut(s) 167, 434, 446
Sse9I AATT 2 cut(s) 514, 538
SsiI CCGC 7 cut(s) 161, 195, 198, 201, 228, 231, 534
SspMI CTAG 1 cut(s) 212
SstI GAGCTC 1 cut(s) 435
StyD4I CCNGG 4 cut(s) 30, 110, 219, 367
StyI CCWWGG 3 cut(s) 302, 373, 458
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 1 cut(s) 243
TaqI TCGA 3 cut(s) 24, 354, 447
TasI AATT 2 cut(s) 514, 538
TauI GCSGC 5 cut(s) 163, 200, 203, 233, 537
TfiI GAWTC 1 cut(s) 364
TscAI CASTG 1 cut(s) 508
TseI GCWGC 3 cut(s) 70, 157, 523
TspDTI ATGAA 2 cut(s) 133, 310
TspRI CASTG 1 cut(s) 508
VpaK11BI GGWCC 1 cut(s) 117
XhoI CTCGAG 1 cut(s) 446
XspI CTAG 1 cut(s) 212
ZraI GACGTC 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.