Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016636

Physical Location & Seq

Genomic Coordinates Forward (+)

25763459 .. 25764207

Gene Structure 749 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAACCTTTCCTCTAACGACCAACCAAGCCAAGGCCGTATCAAGGCCAAGGATTGGTCGACTGATTTGTGTGAATGTTGGATGGACATAAACTCATGCTGCTTGACTTGTTGGTGCCCTTGTGTTGCCTTTGGACGCATCGCGGAGGTTGTAGACAGAGGTTCCACATCGTGTGGTGTGAGCGGAGCGATGTACATGATCATATTCATGTTGACCGGGTATGGAGGAAGCAGTCTCTACTCTTGCTTTTACCGAACCAAACTTAGAGCCCAATACAATCTCAAGGAGAGACCTTGTTGTGACTGTTGTGTCCACTTTTGTTGCGAGCCATGCGCTCTTTGTCAAGAGTATAGGCAACTTCAACACAACCGCGATTTGGACTTGGTCATCGGGTGGCATGGGAATATGGAACGACATGCACGACTTGCTGCCTCTACACCTTCGGCTCCTCCACTTCAAGCACCCATGTCTAGATTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0006979 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0016020 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050896 GO:0051704 GO:0055046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

160

Amino Acids

17.97

Weight (kDa)

7.4

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	19 - 119	1.1e-33	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68610
fragaria_vesca	FvH4_4g27720
malus_domestica	MD16G1045800.v1.1
prunus_persica	Prupe.1G307600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0435581
rosa_laevigata	RLG00000006580
rosa_multiflora	Rmu_sc0006697.1_g000003
rosa_roxburghii	Rroxscaffold_5G00376810
rosa_rugosa	Rorug04G0286800.1
rosa_samantha	Rh4AG342200 Rh4BG350400 Rh4CG365100 Rh4DG344700
rosa_wichuraiana	Rw4G029850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	308
AccB1I	GGYRCC	1 cut(s)	114
AccB7I	CCANNNNNTGG	1 cut(s)	54
AccBSI	CCGCTC	1 cut(s)	183
AccI	GTMKAC	2 cut(s)	59, 153
AccII	CGCG	2 cut(s)	143, 372
AciI	CCGC	3 cut(s)	143, 183, 370
AdeI	CACNNNGTG	1 cut(s)	171
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	4 cut(s)	32, 43, 54, 376
AgsI	TTSAA	2 cut(s)	362, 458
Alw26I	GTCTC	2 cut(s)	239, 283
AoxI	GGCC	2 cut(s)	34, 45
ApeKI	GCWGC	2 cut(s)	99, 428
AspLEI	GCGC	1 cut(s)	335
AsuC2I	CCSGG	1 cut(s)	217
BaeGI	GKGCMC	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	271
BbvI	GCAGC	2 cut(s)	86, 415
BccI	CCATC	1 cut(s)	76
BceAI	ACGGC	1 cut(s)	21
BclI	TGATCA	1 cut(s)	198
BcnI	CCSGG	1 cut(s)	217
BcoDI	GTCTC	2 cut(s)	239, 283
BfaI	CTAG	1 cut(s)	471
BisI	GCNGC	2 cut(s)	100, 429
BlsI	GCNGC	2 cut(s)	101, 430
Bme1390I	CCNGG	1 cut(s)	217
BmiI	GGNNCC	3 cut(s)	116, 163, 447
BmrFI	CCNGG	1 cut(s)	217
BmsI	GCATC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	217
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	2 cut(s)	31, 48
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 43, 54, 376
BseDI	CCNNGG	2 cut(s)	31, 48
BseGI	GGATG	1 cut(s)	87
BseLI	CCNNNNNNNGG	4 cut(s)	32, 43, 54, 376
BseRI	GAGGAG	1 cut(s)	438
BseSI	GKGCMC	1 cut(s)	119
BseXI	GCAGC	2 cut(s)	86, 415
Bsh1236I	CGCG	2 cut(s)	143, 372
BshFI	GGCC	2 cut(s)	36, 47
BshNI	GGYRCC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	216
BslI	CCNNNNNNNGG	4 cut(s)	32, 43, 54, 376
BsmAI	GTCTC	2 cut(s)	239, 283
BsnI	GGCC	2 cut(s)	36, 47
Bso31I	GGTCTC	1 cut(s)	283
Bsp1286I	GDGCHC	2 cut(s)	119, 271
Bsp1407I	TGTACA	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	198
BspACI	CCGC	3 cut(s)	143, 183, 370
BspANI	GGCC	2 cut(s)	36, 47
BspFNI	CGCG	2 cut(s)	143, 372
BspLI	GGNNCC	3 cut(s)	116, 163, 447
BspT107I	GGYRCC	1 cut(s)	114
BspTNI	GGTCTC	1 cut(s)	283
BsrBI	CCGCTC	1 cut(s)	183
BsrGI	TGTACA	1 cut(s)	192
BssECI	CCNNGG	2 cut(s)	31, 48
BssMI	GATC	1 cut(s)	198
BssT1I	CCWWGG	2 cut(s)	31, 48
Bst4CI	ACNGT	1 cut(s)	305
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstAUI	TGTACA	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	1 cut(s)	263
BstF5I	GGATG	1 cut(s)	87
BstFNI	CGCG	2 cut(s)	143, 372
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	1 cut(s)	201
BstMAI	GTCTC	2 cut(s)	239, 283
BstMBI	GATC	1 cut(s)	198
BstMWI	GCNNNNNNNGC	2 cut(s)	330, 425
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	215
BstSLI	GKGCMC	1 cut(s)	119
BstUI	CGCG	2 cut(s)	143, 372
BstV1I	GCAGC	2 cut(s)	86, 415
BsuRI	GGCC	2 cut(s)	36, 47
BtgZI	GCGATG	2 cut(s)	124, 203
BtsCI	GGATG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	326
CfoI	GCGC	1 cut(s)	335
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	1 cut(s)	193
CspCI	CAANNNNNGTGG	2 cut(s)	302, 337
CviAII	CATG	7 cut(s)	96, 196, 208, 330, 398, 416, 466
CviJI	RGCY	6 cut(s)	30, 36, 47, 269, 328, 446
CviKI_1	RGCY	6 cut(s)	30, 36, 47, 269, 328, 446
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
DraIII	CACNNNGTG	1 cut(s)	171
DrdI	GACNNNNNNGTC	1 cut(s)	308
DseDI	GACNNNNNNGTC	1 cut(s)	308
Eco130I	CCWWGG	2 cut(s)	31, 48
Eco24I	GRGCYC	1 cut(s)	271
Eco31I	GGTCTC	1 cut(s)	283
EcoT14I	CCWWGG	2 cut(s)	31, 48
EcoT38I	GRGCYC	1 cut(s)	271
ErhI	CCWWGG	2 cut(s)	31, 48
FaeI	CATG	7 cut(s)	99, 199, 211, 333, 401, 419, 469
FatI	CATG	7 cut(s)	95, 195, 207, 329, 397, 415, 465
FbaI	TGATCA	1 cut(s)	198
FblI	GTMKAC	2 cut(s)	59, 153
Fnu4HI	GCNGC	2 cut(s)	100, 429
FokI	GGATG	1 cut(s)	94
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	2 cut(s)	100, 429
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	2 cut(s)	100, 429
HaeIII	GGCC	2 cut(s)	36, 47
HapII	CCGG	1 cut(s)	216
HgaI	GACGC	1 cut(s)	144
HhaI	GCGC	1 cut(s)	335
Hin1II	CATG	7 cut(s)	99, 199, 211, 333, 401, 419, 469
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HincII	GTYRAC	2 cut(s)	60, 213
HindII	GTYRAC	2 cut(s)	60, 213
HpaII	CCGG	1 cut(s)	216
Hpy166II	GTNNAC	4 cut(s)	60, 154, 213, 313
Hpy188III	TCNNGA	2 cut(s)	344, 471
Hpy8I	GTNNAC	4 cut(s)	60, 154, 213, 313
HpyAV	CCTTC	1 cut(s)	450
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4V	TGCA	1 cut(s)	419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	330, 425
HpyF3I	CTNAG	1 cut(s)	263
Hsp92II	CATG	7 cut(s)	99, 199, 211, 333, 401, 419, 469
HspAI	GCGC	1 cut(s)	333
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	198
LmnI	GCTCC	2 cut(s)	185, 451
LpnPI	CCDG	1 cut(s)	229
Lsp1109I	GCAGC	2 cut(s)	86, 415
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	1 cut(s)	471
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	1 cut(s)	200
MbiI	CCGCTC	1 cut(s)	183
MboI	GATC	1 cut(s)	198
MhlI	GDGCHC	2 cut(s)	119, 271
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	6 cut(s)	22, 139, 152, 218, 442, 459
MseI	TTAA	1 cut(s)	481
MslI	CAYNNNNRTG	1 cut(s)	206
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	217
MvnI	CGCG	2 cut(s)	143, 372
MwoI	GCNNNNNNNGC	2 cut(s)	330, 425
NciI	CCSGG	1 cut(s)	217
NdeII	GATC	1 cut(s)	198
NlaIII	CATG	7 cut(s)	99, 199, 211, 333, 401, 419, 469
NlaIV	GGNNCC	3 cut(s)	116, 163, 447
NmuCI	GTSAC	1 cut(s)	299
NspI	RCATGY	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	418
PflFI	GACNNNGTC	1 cut(s)	383
PflMI	CCANNNNNTGG	1 cut(s)	54
PkrI	GCNGC	2 cut(s)	101, 430
PspN4I	GGNNCC	3 cut(s)	116, 163, 447
PsyI	GACNNNGTC	1 cut(s)	383
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	206
SalI	GTCGAC	1 cut(s)	58
SaqAI	TTAA	1 cut(s)	481
SatI	GCNGC	2 cut(s)	100, 429
Sau3AI	GATC	1 cut(s)	198
ScrFI	CCNGG	1 cut(s)	217
SduI	GDGCHC	2 cut(s)	119, 271
SetI	ASST	5 cut(s)	9, 150, 163, 295, 442
SfaNI	GCATC	1 cut(s)	147
SmiMI	CAYNNNNRTG	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
SsiI	CCGC	3 cut(s)	143, 183, 370
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	1 cut(s)	215
StyI	CCWWGG	2 cut(s)	31, 48
TaaI	ACNGT	1 cut(s)	305
TaqI	TCGA	1 cut(s)	59
TatI	WGTACW	1 cut(s)	192
Tru1I	TTAA	1 cut(s)	481
Tru9I	TTAA	1 cut(s)	481
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	2 cut(s)	99, 428
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	2 cut(s)	17, 196
Tth111I	GACNNNGTC	1 cut(s)	383
Van91I	CCANNNNNTGG	1 cut(s)	54
XbaI	TCTAGA	1 cut(s)	470
XceI	RCATGY	1 cut(s)	419
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XmiI	GTMKAC	2 cut(s)	59, 153
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.