Prupe.1G307600_v2.0.a1

PLAC8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016636
Physical Location & Seq
Forward (+)
30012977 .. 30013841
865 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G307600.1

Sequence Viewer

Length: 558 bp
ATGGCTGAGTTACAGAAAGAATCTGTCACTCCGGACAGACCGGCCCCGCCGTCAGCGCCTCCTCTCACAGCCACCGGCATTCCGGTTGATCCGCTCATGATCAGCAATAATACTCCTCATTCCCCAGTGCCTTGGTCCACTGGGCTCTGCAACTGTTGTGAAGATGTTAGCAGTTGTTGCTTGACGTGTTGGTGTCCGTGTGTGACATTTGGACGCATTGCAGAAATTGTGGACAGGGGATCAACTTCTTGTGGAGTAAGCGGGACTATTTACAGTTTGATGCTGTGCTTGGTGGGTTGCTCGTGCTTGTATTCGTGCTTCTATCGATCCAAACTGAGAGGGCAATATTTGTTGGAGGAGAGGCCCTGCACAGATTGTTGCGTCCATTTTTGCTGCGAGGAATGTGCTTTGTGCCAAGAGTATAGGCAGCTTCAGAACCAGGGCTTTGACATGTCCATAGGTTGGCATGGCAACGTCGAAAGGCAGAAACGACTGGCTGCAACAATGGCATCGCCATCGCCATTGCCTCCACAGCTTCAGACTGGCATGACGCGTTAA

Protein Analysis

186

Amino Acids

20.26

Weight (kDa)

5.57

Isoelectric Point (pI)

63.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016636)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68610
fragaria_vesca FvH4_4g27720
malus_domestica MD16G1045800.v1.1
prunus_persica Prupe.1G307600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0435581
rosa_laevigata RLG00000006580
rosa_multiflora Rmu_sc0006697.1_g000003
rosa_roxburghii Rroxscaffold_5G00376810
rosa_rugosa Rorug04G0286800.1
rosa_samantha Rh4AG342200 Rh4BG350400 Rh4CG365100 Rh4DG344700
rosa_wichuraiana Rw4G029850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 462
AccBSI CCGCTC 1 cut(s) 94
AccII CGCG 1 cut(s) 553
AccIII TCCGGA 1 cut(s) 31
AciI CCGC 3 cut(s) 47, 92, 261
AclWI GGATC 3 cut(s) 83, 247, 321
AcuI CTGAAG 2 cut(s) 416, 521
AfiI CCNNNNNNNGG 1 cut(s) 462
AflIII ACRYGT 3 cut(s) 185, 450, 551
AjiI CACGTC 1 cut(s) 186
AjnI CCWGG 1 cut(s) 438
AluBI AGCT 2 cut(s) 430, 535
AluI AGCT 2 cut(s) 430, 535
AlwI GGATC 3 cut(s) 83, 247, 321
Aor13HI TCCGGA 1 cut(s) 31
AoxI GGCC 2 cut(s) 42, 362
ApeKI GCWGC 3 cut(s) 393, 427, 497
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 3 cut(s) 43, 135, 363
AvaII GGWCC 1 cut(s) 135
BanII GRGCYC 1 cut(s) 147
BarI GAAGNNNNNNTAC 2 cut(s) 302, 334
BauI CACGAG 1 cut(s) 301
BbvI GCAGC 3 cut(s) 380, 439, 484
BccI CCATC 1 cut(s) 523
BceAI ACGGC 1 cut(s) 34
BcgI CGANNNNNNTGC 4 cut(s) 386, 420, 498, 532
BciT130I CCWGG 1 cut(s) 440
BclI TGATCA 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 59
BisI GCNGC 3 cut(s) 394, 428, 498
BlsI GCNGC 3 cut(s) 395, 429, 499
Bme1390I CCNGG 1 cut(s) 440
Bme18I GGWCC 1 cut(s) 135
BmgBI CACGTC 1 cut(s) 186
BmgT120I GGNCC 3 cut(s) 43, 135, 363
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 440
BmrI ACTGGG 2 cut(s) 119, 150
BmsI GCATC 2 cut(s) 270, 518
BmuI ACTGGG 2 cut(s) 119, 150
Bsa29I ATCGAT 1 cut(s) 325
BsaJI CCNNGG 2 cut(s) 131, 439
BsaWI WCCGGW 2 cut(s) 31, 82
Bsc4I CCNNNNNNNGG 1 cut(s) 462
Bse118I RCCGGY 2 cut(s) 40, 74
Bse1I ACTGG 4 cut(s) 125, 145, 498, 547
Bse3DI GCAATG 2 cut(s) 216, 521
BseAI TCCGGA 1 cut(s) 31
BseBI CCWGG 1 cut(s) 440
BseCI ATCGAT 1 cut(s) 325
BseDI CCNNGG 2 cut(s) 131, 439
BseLI CCNNNNNNNGG 1 cut(s) 462
BseMI GCAATG 2 cut(s) 216, 521
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 4 cut(s) 125, 145, 498, 547
BseRI GAGGAG 3 cut(s) 51, 105, 371
BseXI GCAGC 3 cut(s) 380, 439, 484
BsgI GTGCAG 1 cut(s) 352
Bsh1236I CGCG 1 cut(s) 553
BshFI GGCC 2 cut(s) 44, 364
BshVI ATCGAT 1 cut(s) 325
BsiSI CCGG 4 cut(s) 32, 41, 75, 83
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 1 cut(s) 462
BsmFI GGGAC 1 cut(s) 277
BsmI GAATGC 1 cut(s) 78
BsnI GGCC 2 cut(s) 44, 364
Bsp1286I GDGCHC 1 cut(s) 147
Bsp13I TCCGGA 1 cut(s) 31
Bsp143I GATC 4 cut(s) 88, 99, 239, 326
BspACI CCGC 3 cut(s) 47, 92, 261
BspANI GGCC 2 cut(s) 44, 364
BspCNI CTCAG 1 cut(s) 327
BspDI ATCGAT 1 cut(s) 325
BspEI TCCGGA 1 cut(s) 31
BspFNI CGCG 1 cut(s) 553
BspHI TCATGA 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 45
BspPI GGATC 3 cut(s) 83, 247, 321
BsrBI CCGCTC 1 cut(s) 94
BsrDI GCAATG 2 cut(s) 216, 521
BsrFI RCCGGY 2 cut(s) 40, 74
BsrI ACTGG 4 cut(s) 125, 145, 498, 547
BssAI RCCGGY 2 cut(s) 40, 74
BssECI CCNNGG 2 cut(s) 131, 439
BssMI GATC 4 cut(s) 88, 99, 239, 326
BssSI CACGAG 1 cut(s) 301
BssT1I CCWWGG 1 cut(s) 131
Bst2BI CACGAG 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 440
Bst4CI ACNGT 2 cut(s) 155, 275
BstAPI GCANNNNNTGC 1 cut(s) 177
BstDEI CTNAG 2 cut(s) 6, 335
BstFNI CGCG 1 cut(s) 553
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 4 cut(s) 91, 102, 242, 329
BstMBI GATC 4 cut(s) 88, 99, 239, 326
BstMWI GCNNNNNNNGC 4 cut(s) 55, 177, 506, 532
BstNI CCWGG 1 cut(s) 440
BstNSI RCATGY 1 cut(s) 454
BstSCI CCNGG 1 cut(s) 438
BstUI CGCG 1 cut(s) 553
BstV1I GCAGC 3 cut(s) 380, 439, 484
BstXI CCANNNNNNTGG 1 cut(s) 132
Bsu15I ATCGAT 1 cut(s) 325
BsuRI GGCC 2 cut(s) 44, 364
BsuTUI ATCGAT 1 cut(s) 325
BtgZI GCGATG 2 cut(s) 495, 501
BtrI CACGTC 1 cut(s) 186
BtsIMutI CAGTG 2 cut(s) 132, 138
CciI TCATGA 1 cut(s) 96
CfoI GCGC 1 cut(s) 58
Cfr10I RCCGGY 2 cut(s) 40, 74
Cfr13I GGNCC 3 cut(s) 43, 135, 363
ClaI ATCGAT 1 cut(s) 325
CseI GACGC 2 cut(s) 222, 370
CviAII CATG 4 cut(s) 97, 451, 467, 547
CviJI RGCY 9 cut(s) 5, 44, 71, 145, 364, 430, 444, 497, 535
CviKI_1 RGCY 9 cut(s) 5, 44, 71, 145, 364, 430, 444, 497, 535
DdeI CTNAG 2 cut(s) 6, 335
DpnI GATC 4 cut(s) 90, 101, 241, 328
DpnII GATC 4 cut(s) 88, 99, 239, 326
Eco130I CCWWGG 1 cut(s) 131
Eco24I GRGCYC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 135
Eco57I CTGAAG 2 cut(s) 416, 521
EcoO109I RGGNCCY 1 cut(s) 363
EcoRII CCWGG 1 cut(s) 438
EcoT14I CCWWGG 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 131
FaeI CATG 4 cut(s) 100, 454, 470, 550
FaiI YATR 6 cut(s) 98, 423, 452, 458, 468, 548
FaqI GGGAC 1 cut(s) 277
FatI CATG 4 cut(s) 96, 450, 466, 546
FauI CCCGC 2 cut(s) 54, 254
FbaI TGATCA 1 cut(s) 99
Fnu4HI GCNGC 3 cut(s) 394, 428, 498
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 3 cut(s) 394, 428, 498
GlaI GCGC 1 cut(s) 57
GluI GCNGC 3 cut(s) 394, 428, 498
HaeII RGCGCY 1 cut(s) 59
HaeIII GGCC 2 cut(s) 44, 364
HapII CCGG 4 cut(s) 32, 41, 75, 83
HgaI GACGC 2 cut(s) 222, 370
HhaI GCGC 1 cut(s) 58
Hin1II CATG 4 cut(s) 100, 454, 470, 550
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HinfI GANTC 1 cut(s) 20
HpaII CCGG 4 cut(s) 32, 41, 75, 83
Hpy166II GTNNAC 2 cut(s) 138, 232
Hpy188I TCNGA 2 cut(s) 435, 540
Hpy188III TCNNGA 2 cut(s) 32, 97
Hpy8I GTNNAC 2 cut(s) 138, 232
Hpy99I CGWCG 1 cut(s) 479
HpyCH4III ACNGT 2 cut(s) 155, 275
HpyCH4IV ACGT 2 cut(s) 185, 474
HpyCH4V TGCA 4 cut(s) 150, 221, 369, 500
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 177, 506, 532
HpyF3I CTNAG 2 cut(s) 6, 335
HpySE526I ACGT 2 cut(s) 185, 474
Hsp92II CATG 4 cut(s) 100, 454, 470, 550
HspAI GCGC 1 cut(s) 56
Kpn2I TCCGGA 1 cut(s) 31
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 4 cut(s) 88, 99, 239, 326
Lsp1109I GCAGC 3 cut(s) 380, 439, 484
LweI GCATC 2 cut(s) 270, 518
MaeII ACGT 2 cut(s) 185, 474
MaeIII GTNAC 3 cut(s) 9, 25, 202
MalI GATC 4 cut(s) 90, 101, 241, 328
MbiI CCGCTC 1 cut(s) 94
MboI GATC 4 cut(s) 88, 99, 239, 326
MboII GAAGA 1 cut(s) 173
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 1 cut(s) 225
MluI ACGCGT 1 cut(s) 551
MmeI TCCRAC 1 cut(s) 333
MnlI CCTC 8 cut(s) 69, 72, 126, 332, 349, 354, 391, 537
MroI TCCGGA 1 cut(s) 31
MseI TTAA 1 cut(s) 556
MspI CCGG 4 cut(s) 32, 41, 75, 83
MspR9I CCNGG 1 cut(s) 440
Mva1269I GAATGC 1 cut(s) 78
MvaI CCWGG 1 cut(s) 440
MvnI CGCG 1 cut(s) 553
MwoI GCNNNNNNNGC 4 cut(s) 55, 177, 506, 532
NdeII GATC 4 cut(s) 88, 99, 239, 326
NlaIII CATG 4 cut(s) 100, 454, 470, 550
NlaIV GGNNCC 1 cut(s) 45
NmuCI GTSAC 2 cut(s) 25, 202
NspI RCATGY 1 cut(s) 454
PagI TCATGA 1 cut(s) 96
PciI ACATGT 1 cut(s) 450
PctI GAATGC 1 cut(s) 78
PfeI GAWTC 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 462
PkrI GCNGC 3 cut(s) 395, 429, 499
PscI ACATGT 1 cut(s) 450
Psp6I CCWGG 1 cut(s) 438
PspGI CCWGG 1 cut(s) 438
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 3 cut(s) 43, 135, 363
SaqAI TTAA 1 cut(s) 556
SatI GCNGC 3 cut(s) 394, 428, 498
Sau3AI GATC 4 cut(s) 88, 99, 239, 326
Sau96I GGNCC 3 cut(s) 43, 135, 363
ScrFI CCNGG 1 cut(s) 440
SduI GDGCHC 1 cut(s) 147
SetI ASST 5 cut(s) 188, 432, 463, 477, 537
SfaNI GCATC 2 cut(s) 270, 518
SinI GGWCC 1 cut(s) 135
Sse9I AATT 1 cut(s) 225
SsiI CCGC 3 cut(s) 47, 92, 261
SspI AATATT 1 cut(s) 347
StyD4I CCNGG 1 cut(s) 438
StyI CCWWGG 1 cut(s) 131
TaaI ACNGT 2 cut(s) 155, 275
TaiI ACGT 2 cut(s) 188, 477
TaqI TCGA 2 cut(s) 325, 477
TasI AATT 1 cut(s) 225
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 1 cut(s) 556
Tru9I TTAA 1 cut(s) 556
TscAI CASTG 2 cut(s) 132, 145
TseFI GTSAC 2 cut(s) 25, 202
TseI GCWGC 3 cut(s) 393, 427, 497
Tsp45I GTSAC 2 cut(s) 25, 202
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 2 cut(s) 132, 145
Van91I CCANNNNNTGG 1 cut(s) 462
VpaK11BI GGWCC 1 cut(s) 135
XceI RCATGY 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.