AT1G68800
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014202
Physical Location & Seq
Reverse (-)
25845892 .. 25850131
4240 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G68800.2

Sequence Viewer

Length: 1071 bp
ATGTTTCCTTCTCTAGATACCAATGGCTATGACCTCTTTGATCCCTTCATTCCCCATCAAACAACCATGTTTCCTTCTTTCATTACTCACATTCAAAGCCCTAATTCTCACCATCACTACTCTTCGCCTTCTTTTCCTTTCTCTTCCGATTTTCTTGAGAGTTTTGATGAATCCTTCTTGATAAACCAATTCTTGTTACAGCAGCAAGATGTAGCAGCAAATGTTGTTGAATCTCCTTGGAAATTTTGCAAGAAGCTTGAGCTTAAGAAGAAGAATGAGAAGTGTGTTGATGGAAGCACCTCACAAGAGGTTCAATGGAGAAGGACGGTCAAAAAAAGGGACAGGCATAGTAAGATCTGCACGGCTCAAGGTCCTAGAGACCGGAGGATGAGGCTGTCTCTTCAGATTGCTCGCAAGTTTTTCGATCTTCAAGACATGTTGGGTTTCGACAAGGCGAGCAAGACGATTGAATGGCTTTTCTCCAAATCAAAGACTTCCATCAAACAACTTAAAGAAAGAGTGGCTGCATCGGAAGGAGGAGGAAAGGATGAACATCTCCAGGTTGATGAAAAGGAAAAGGATGAGACACTGAAGTTGAGAGTCTCAAAGAGAAGAACAAAGACTATGGAGAGCTCTTTTAAGACTAAAGAGTCGAGAGAGAGAGCTAGAAAGCGAGCAAGAGAGAGAACAATGGCAAAGATGAAGATGAGATTATTTGAGACCTCGGAAACAATTTCAGATCCTCATCAAGAAACTAGAGAGATCAAGATAACCAATGGTGTACAATTACTAGAAAAGGAAAATAAAGAACAAGAATGGAGTAATACTAATGATGTTCACATGGTAGAGTATCAAATGGATTCTGTGAGCATCATAGAGAAGTTTCTTGGACTAACCAGTGACTCTAGCTCCTCTTCCATTTTTGGTGACTCCGAGGAATGTTACACAAGTCTTAGTTCAGTAAGAGGAATGTCGACACCAAGGGAACACAACACAACTTCAATAGCAACGGTGGATGAGGAGAAAAGCCCCATATCATCTTTCTCTCTATATGATTATCTCTGCTACTGA

Protein Analysis

356

Amino Acids

41.37

Weight (kDa)

8.14

Isoelectric Point (pI)

55.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 111 - 192 1.1e-35 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68800 AT1G68800
fragaria_vesca FvH4_4g28170 FvH4_4g28170 FvH4_4g28170
malus_domestica MD13G1047200.v1.1 MD16G1049000.v1.1
prunus_persica Prupe.1G304700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0435921
rosa_laevigata RLG00000006548
rosa_multiflora Rmu_sc0003165.1_g000002
rosa_roxburghii Rroxscaffold_5G00377100
rosa_rugosa Rorug04G0290700
rosa_samantha Rh4BG353900 Rh4CG368300 Rh4DG347700
rosa_wichuraiana Rw4G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 649
AccI GTMKAC 1 cut(s) 974
AclWI GGATC 2 cut(s) 35, 734
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 2 cut(s) 386, 611
AfaI GTAC 1 cut(s) 783
AflII CTTAAG 1 cut(s) 263
AflIII ACRYGT 1 cut(s) 435
AgsI TTSAA 6 cut(s) 95, 230, 314, 431, 470, 1002
AjnI CCWGG 1 cut(s) 558
AluBI AGCT 5 cut(s) 256, 262, 633, 665, 909
AluI AGCT 5 cut(s) 256, 262, 633, 665, 909
Alw21I GWGCWC 1 cut(s) 635
Alw26I GTCTC 5 cut(s) 372, 402, 578, 607, 713
AlwI GGATC 2 cut(s) 35, 734
ApeKI GCWGC 3 cut(s) 202, 215, 524
ApoI RAATTY 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 371
AsuHPI GGTGA 2 cut(s) 101, 938
AvaII GGWCC 1 cut(s) 371
BanII GRGCYC 1 cut(s) 635
Bbv12I GWGCWC 1 cut(s) 635
BbvI GCAGC 3 cut(s) 214, 227, 511
BccI CCATC 4 cut(s) 63, 120, 284, 506
BceAI ACGGC 1 cut(s) 378
BcgI CGANNNNNNTGC 2 cut(s) 403, 437
BciT130I CCWGG 1 cut(s) 560
BcoDI GTCTC 5 cut(s) 372, 402, 578, 607, 713
BfaI CTAG 6 cut(s) 14, 375, 666, 756, 791, 906
BfrI CTTAAG 1 cut(s) 263
BglII AGATCT 1 cut(s) 354
BisI GCNGC 3 cut(s) 203, 216, 525
BlsI GCNGC 3 cut(s) 204, 217, 526
Bme1390I CCNGG 1 cut(s) 560
Bme18I GGWCC 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 371
BmrFI CCNGG 1 cut(s) 560
BmsI GCATC 2 cut(s) 536, 879
BplI GAGNNNNNCTC 2 cut(s) 382, 414
BpmI CTGGAG 1 cut(s) 542
BpuEI CTTGAG 3 cut(s) 176, 278, 351
BsaBI GATNNNNATC 2 cut(s) 552, 744
BsaI GGTCTC 2 cut(s) 372, 713
BsaJI CCNNGG 4 cut(s) 236, 723, 933, 980
BsaWI WCCGGW 1 cut(s) 381
BsaXI ACNNNNNCTCC 2 cut(s) 893, 923
Bse1I ACTGG 1 cut(s) 897
Bse8I GATNNNNATC 2 cut(s) 552, 744
BseBI CCWGG 1 cut(s) 560
BseDI CCNNGG 4 cut(s) 236, 723, 933, 980
BseGI GGATG 4 cut(s) 393, 553, 586, 1021
BseJI GATNNNNATC 2 cut(s) 552, 744
BseNI ACTGG 1 cut(s) 897
BseRI GAGGAG 3 cut(s) 552, 901, 1034
BseXI GCAGC 3 cut(s) 214, 227, 511
BsgI GTGCAG 1 cut(s) 343
BsiHKAI GWGCWC 1 cut(s) 635
BsiSI CCGG 1 cut(s) 382
BslFI GGGAC 1 cut(s) 353
BsmAI GTCTC 5 cut(s) 372, 402, 578, 607, 713
BsmFI GGGAC 1 cut(s) 353
Bso31I GGTCTC 2 cut(s) 372, 713
Bsp1286I GDGCHC 1 cut(s) 635
Bsp1407I TGTACA 1 cut(s) 781
Bsp143I GATC 5 cut(s) 40, 354, 424, 739, 762
BspPI GGATC 2 cut(s) 35, 734
BspTI CTTAAG 1 cut(s) 263
BspTNI GGTCTC 2 cut(s) 372, 713
BsrGI TGTACA 1 cut(s) 781
BsrI ACTGG 1 cut(s) 897
BssECI CCNNGG 4 cut(s) 236, 723, 933, 980
BssMI GATC 5 cut(s) 40, 354, 424, 739, 762
BssT1I CCWWGG 2 cut(s) 236, 980
Bst2UI CCWGG 1 cut(s) 560
Bst4CI ACNGT 2 cut(s) 328, 1012
Bst6I CTCTTC 4 cut(s) 127, 148, 405, 919
BstAFI CTTAAG 1 cut(s) 263
BstAUI TGTACA 1 cut(s) 781
BstC8I GCNNGC 3 cut(s) 412, 457, 675
BstDEI CTNAG 1 cut(s) 953
BstF5I GGATG 4 cut(s) 393, 553, 586, 1021
BstKTI GATC 5 cut(s) 43, 357, 427, 742, 765
BstMAI GTCTC 5 cut(s) 372, 402, 578, 607, 713
BstMBI GATC 5 cut(s) 40, 354, 424, 739, 762
BstNI CCWGG 1 cut(s) 560
BstNSI RCATGY 1 cut(s) 439
BstSCI CCNGG 1 cut(s) 558
BstV1I GCAGC 3 cut(s) 214, 227, 511
BstX2I RGATCY 2 cut(s) 354, 739
BstYI RGATCY 2 cut(s) 354, 739
BtsCI GGATG 4 cut(s) 393, 553, 586, 1021
BtsIMutI CAGTG 2 cut(s) 587, 904
Cac8I GCNNGC 3 cut(s) 412, 457, 675
Cfr13I GGNCC 1 cut(s) 371
Csp6I GTAC 1 cut(s) 782
CviAII CATG 3 cut(s) 67, 436, 841
CviQI GTAC 1 cut(s) 782
DdeI CTNAG 1 cut(s) 953
DpnI GATC 5 cut(s) 42, 356, 426, 741, 764
DpnII GATC 5 cut(s) 40, 354, 424, 739, 762
DrdI GACNNNNNNGTC 1 cut(s) 649
DseDI GACNNNNNNGTC 1 cut(s) 649
Eam1104I CTCTTC 4 cut(s) 127, 148, 405, 919
EarI CTCTTC 4 cut(s) 127, 148, 405, 919
Ecl136II GAGCTC 1 cut(s) 633
Eco130I CCWWGG 2 cut(s) 236, 980
Eco24I GRGCYC 1 cut(s) 635
Eco31I GGTCTC 2 cut(s) 372, 713
Eco47I GGWCC 1 cut(s) 371
Eco53kI GAGCTC 1 cut(s) 633
Eco57I CTGAAG 2 cut(s) 386, 611
EcoICRI GAGCTC 1 cut(s) 633
EcoO109I RGGNCCY 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 558
EcoT14I CCWWGG 2 cut(s) 236, 980
EcoT38I GRGCYC 1 cut(s) 635
ErhI CCWWGG 2 cut(s) 236, 980
FaeI CATG 3 cut(s) 70, 439, 844
FaqI GGGAC 1 cut(s) 353
FatI CATG 3 cut(s) 66, 435, 840
FblI GTMKAC 1 cut(s) 974
Fnu4HI GCNGC 3 cut(s) 203, 216, 525
FokI GGATG 4 cut(s) 400, 560, 593, 1028
FriOI GRGCYC 1 cut(s) 635
Fsp4HI GCNGC 3 cut(s) 203, 216, 525
FspBI CTAG 6 cut(s) 14, 375, 666, 756, 791, 906
GluI GCNGC 3 cut(s) 203, 216, 525
GsuI CTGGAG 1 cut(s) 542
HapII CCGG 1 cut(s) 382
Hin1II CATG 3 cut(s) 70, 439, 844
HincII GTYRAC 1 cut(s) 975
HindII GTYRAC 1 cut(s) 975
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 7 cut(s) 170, 230, 600, 650, 860, 902, 929
HpaII CCGG 1 cut(s) 382
HphI GGTGA 2 cut(s) 101, 938
Hpy166II GTNNAC 3 cut(s) 782, 838, 975
Hpy188I TCNGA 6 cut(s) 148, 405, 532, 727, 739, 934
Hpy188III TCNNGA 7 cut(s) 14, 155, 178, 431, 654, 749, 766
Hpy8I GTNNAC 3 cut(s) 782, 838, 975
HpyAV CCTTC 7 cut(s) 18, 55, 84, 138, 184, 315, 527
HpyCH4III ACNGT 2 cut(s) 328, 1012
HpyCH4V TGCA 3 cut(s) 249, 360, 527
HpyF3I CTNAG 1 cut(s) 953
Hsp92II CATG 3 cut(s) 70, 439, 844
Kzo9I GATC 5 cut(s) 40, 354, 424, 739, 762
LmnI GCTCC 1 cut(s) 914
LpnPI CCDG 5 cut(s) 328, 395, 545, 572, 910
Lsp1109I GCAGC 3 cut(s) 214, 227, 511
LweI GCATC 2 cut(s) 536, 879
MaeI CTAG 6 cut(s) 14, 375, 666, 756, 791, 906
MaeIII GTNAC 4 cut(s) 195, 899, 926, 941
MalI GATC 5 cut(s) 42, 356, 426, 741, 764
MboI GATC 5 cut(s) 40, 354, 424, 739, 762
MboII GAAGA 9 cut(s) 114, 135, 280, 283, 392, 419, 624, 715, 906
MflI RGATCY 2 cut(s) 354, 739
MhlI GDGCHC 1 cut(s) 635
MluCI AATT 5 cut(s) 103, 188, 242, 732, 785
MlyI GAGTC 4 cut(s) 609, 659, 896, 923
MseI TTAA 3 cut(s) 264, 510, 639
MspCI CTTAAG 1 cut(s) 263
MspI CCGG 1 cut(s) 382
MspR9I CCNGG 1 cut(s) 560
MvaI CCWGG 1 cut(s) 560
NdeII GATC 5 cut(s) 40, 354, 424, 739, 762
NlaIII CATG 3 cut(s) 70, 439, 844
NmuCI GTSAC 2 cut(s) 899, 926
NspI RCATGY 1 cut(s) 439
PciI ACATGT 1 cut(s) 435
PfeI GAWTC 3 cut(s) 170, 230, 860
PkrI GCNGC 3 cut(s) 204, 217, 526
PleI GAGTC 4 cut(s) 608, 658, 896, 923
PpsI GAGTC 4 cut(s) 608, 658, 896, 923
PpuMI RGGWCCY 1 cut(s) 371
PscI ACATGT 1 cut(s) 435
Psp124BI GAGCTC 1 cut(s) 635
Psp5II RGGWCCY 1 cut(s) 371
Psp6I CCWGG 1 cut(s) 558
PspGI CCWGG 1 cut(s) 558
PspPI GGNCC 1 cut(s) 371
PspPPI RGGWCCY 1 cut(s) 371
PsuI RGATCY 2 cut(s) 354, 739
RsaI GTAC 1 cut(s) 783
RsaNI GTAC 1 cut(s) 782
SacI GAGCTC 1 cut(s) 635
SalI GTCGAC 1 cut(s) 973
SaqAI TTAA 3 cut(s) 264, 510, 639
SatI GCNGC 3 cut(s) 203, 216, 525
Sau3AI GATC 5 cut(s) 40, 354, 424, 739, 762
Sau96I GGNCC 1 cut(s) 371
SchI GAGTC 4 cut(s) 609, 659, 896, 923
ScrFI CCNGG 1 cut(s) 560
SduI GDGCHC 1 cut(s) 635
SfaNI GCATC 2 cut(s) 536, 879
SinI GGWCC 1 cut(s) 371
SmlI CTYRAG 4 cut(s) 155, 257, 263, 366
SmoI CTYRAG 4 cut(s) 155, 257, 263, 366
Sse9I AATT 5 cut(s) 103, 188, 242, 732, 785
SspMI CTAG 6 cut(s) 14, 375, 666, 756, 791, 906
SstI GAGCTC 1 cut(s) 635
StyD4I CCNGG 1 cut(s) 558
StyI CCWWGG 2 cut(s) 236, 980
TaaI ACNGT 2 cut(s) 328, 1012
TaqI TCGA 4 cut(s) 423, 447, 653, 974
TasI AATT 5 cut(s) 103, 188, 242, 732, 785
TatI WGTACW 1 cut(s) 781
TfiI GAWTC 3 cut(s) 170, 230, 860
Tru1I TTAA 3 cut(s) 264, 510, 639
Tru9I TTAA 3 cut(s) 264, 510, 639
TscAI CASTG 2 cut(s) 594, 904
TseFI GTSAC 2 cut(s) 899, 926
TseI GCWGC 3 cut(s) 202, 215, 524
Tsp45I GTSAC 2 cut(s) 899, 926
TspDTI ATGAA 6 cut(s) 37, 70, 183, 564, 582, 716
TspRI CASTG 2 cut(s) 594, 904
Vha464I CTTAAG 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 371
XapI RAATTY 1 cut(s) 242
XbaI TCTAGA 1 cut(s) 13
XceI RCATGY 1 cut(s) 439
XmiI GTMKAC 1 cut(s) 974
XspI CTAG 6 cut(s) 14, 375, 666, 756, 791, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.