Prupe.1G304700_v2.0.a1
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014202
Physical Location & Seq
Reverse (-)
29836059 .. 29840381
4323 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G304700.1

Sequence Viewer

Length: 1278 bp
ATGACCATGTTTCCTTCTAGCAGCAGCGCTAGTAATTACCAGCGGCCTTTTCCATGTGATACCAACCAGCAGCCGCAGCTGCTCGAAAAGTCCTCTACAAATATCATTGATCAGCATGATCATGAAAACCCTAACTCAATATCACATGATGACCATCATATTCGTCAGTACTATTCACACTACTCTGAAGATCATCAGCATCAGGCACCTAATAATTTTCTTGAACACGACGGACTGCTTTTGAGCTACTTGCTATCTCAGCAGCAGCTCTTGGTTGGAAGCTCCAGTCCCAATATGAACAGTGCTACTTCTCATCATGTTCAAGCTCATGATACTACTGAAATCAGCGTTGTGGCTTCCAATTCAAACAAAAAAGTAATGGATCGTGTTGACGAGGATCGGACTGCCCCAGCTGCAACTTCGAAAGGGTGCTCTTCAAAGAAGAAGAGCAATACATCAAATGGAGAAAGCAAGAACGCGAAGGCTCCTCGAAAGAGATCAAGCGGGAATAAGGACAGGCACAGCAAGATCTACACAGCTCAAGGCCCAAGAGACCGCAGAATGAGGCTGTCTCTTCAAATTGCCCGCAAGTTCTTTGATCTTCAAGACATGCTGGGGTTTGATAAAGCCAGCAAAACCATCGAGTGGCTTTTCACAAAGTCCAAGACTTCCATCAAGGAACTCAAGCAGCACCTCAACATCTCACCCCTGGCAGCTTACAGCTGTAGCACCAATGCCAACGCTACTTCTACCAGCACAATCACTGCAAAGATGAATTCGTCCACTTCTGAGAATAGCGAAGTTGCATCCAAGATTCAGGAGACTGCAAATGGCGACGTACATTCGATTGGGACATTGGAAAGAGAGAAAAAGAACAGGAAGTTATGTGTGGTTGCGAGGGAATCGAGGGTCGAGGCAAGAGCAAGGGCAAGGGAGAGAACAAGGGAGAAGATGATGAGGACCAGATCAGGTTTGGATCAATATCAGAATTTAAGAAAACAAAGCCCTGATCATGATCAAGTACCACAAAACCCTAATAATGATCAATTCTCAGGCGGTCACTACTTATGGTCTTCTAATTGTCCTAATGATCAATTGTTTGAACCTGGAATGATGATGAATTCCATGGTGATGAGCATCAATCATCATGATGAGAAGGTTGTGGGCAGCACAACAATTCCCAGTGGAGCAAATTCCGAGGATTATGATTTTCCAAGTTTTCCTGGGAATTGGGGCCAAATCAACAATTCCAAGAACACTACAGGTTTGAGTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

426

Amino Acids

47.64

Weight (kDa)

8.9

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68800 AT1G68800
fragaria_vesca FvH4_4g28170 FvH4_4g28170 FvH4_4g28170
malus_domestica MD13G1047200.v1.1 MD16G1049000.v1.1
prunus_persica Prupe.1G304700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0435921
rosa_laevigata RLG00000006548
rosa_multiflora Rmu_sc0003165.1_g000002
rosa_roxburghii Rroxscaffold_5G00377100
rosa_rugosa Rorug04G0290700
rosa_samantha Rh4BG353900 Rh4CG368300 Rh4DG347700
rosa_wichuraiana Rw4G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 205
AccB7I CCANNNNNTGG 1 cut(s) 645
AccII CGCG 1 cut(s) 479
AciI CCGC 6 cut(s) 43, 74, 504, 556, 586, 1056
AclWI GGATC 3 cut(s) 390, 405, 984
AcsI RAATTY 4 cut(s) 775, 988, 1120, 1192
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 3 cut(s) 170, 840, 1023
AfeI AGCGCT 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 645
AgsI TTSAA 7 cut(s) 224, 323, 366, 438, 578, 605, 1103
AjnI CCWGG 3 cut(s) 708, 1105, 1222
Alw21I GWGCWC 1 cut(s) 434
Alw26I GTCTC 3 cut(s) 546, 576, 815
AlwI GGATC 3 cut(s) 390, 405, 984
Aor51HI AGCGCT 1 cut(s) 28
AoxI GGCC 3 cut(s) 44, 544, 1234
ApoI RAATTY 4 cut(s) 775, 988, 1120, 1192
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 3 cut(s) 545, 960, 1234
AsuHPI GGTGA 2 cut(s) 696, 1141
AsuII TTCGAA 1 cut(s) 422
AvaII GGWCC 1 cut(s) 960
BanI GGYRCC 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 1065
Bbv12I GWGCWC 1 cut(s) 434
BccI CCATC 3 cut(s) 162, 647, 680
BcgI CGANNNNNNTGC 2 cut(s) 622, 656
BciT130I CCWGG 3 cut(s) 710, 1107, 1224
BclI TGATCA 6 cut(s) 109, 118, 1009, 1015, 1042, 1090
BcoDI GTCTC 3 cut(s) 546, 576, 815
BfaI CTAG 3 cut(s) 18, 30, 1276
BfmI CTRYAG 2 cut(s) 724, 1260
BfoI RGCGCY 1 cut(s) 30
BglII AGATCT 1 cut(s) 528
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 3 cut(s) 710, 1107, 1224
Bme18I GGWCC 1 cut(s) 960
BmgT120I GGNCC 3 cut(s) 545, 960, 1234
BmiI GGNNCC 3 cut(s) 207, 486, 1235
BmrFI CCNGG 3 cut(s) 710, 1107, 1224
BmrI ACTGGG 1 cut(s) 1176
BmsI GCATC 3 cut(s) 208, 815, 1146
BmuI ACTGGG 1 cut(s) 1176
BpiI GAAGAC 1 cut(s) 1065
BplI GAGNNNNNCTC 2 cut(s) 556, 588
BpmI CTGGAG 1 cut(s) 268
Bpu14I TTCGAA 1 cut(s) 422
BpuEI CTTGAG 2 cut(s) 525, 668
BsaBI GATNNNNATC 4 cut(s) 153, 981, 1014, 1136
BsaI GGTCTC 1 cut(s) 546
BsaJI CCNNGG 4 cut(s) 708, 1125, 1197, 1223
Bsc4I CCNNNNNNNGG 1 cut(s) 645
Bse1I ACTGG 2 cut(s) 285, 1182
Bse8I GATNNNNATC 4 cut(s) 153, 981, 1014, 1136
BseBI CCWGG 3 cut(s) 710, 1107, 1224
BseDI CCNNGG 4 cut(s) 708, 1125, 1197, 1223
BseGI GGATG 1 cut(s) 806
BseJI GATNNNNATC 4 cut(s) 153, 981, 1014, 1136
BseLI CCNNNNNNNGG 1 cut(s) 645
BseMII CTCAG 3 cut(s) 272, 780, 1065
BseNI ACTGG 2 cut(s) 285, 1182
BseRI GAGGAG 1 cut(s) 477
BseYI CCCAGC 2 cut(s) 409, 613
Bsh1236I CGCG 1 cut(s) 479
BshFI GGCC 3 cut(s) 46, 546, 1236
BshNI GGYRCC 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 434
BslFI GGGAC 2 cut(s) 273, 865
BslI CCNNNNNNNGG 1 cut(s) 645
BsmAI GTCTC 3 cut(s) 546, 576, 815
BsmFI GGGAC 2 cut(s) 273, 865
BsnI GGCC 3 cut(s) 46, 546, 1236
Bso31I GGTCTC 1 cut(s) 546
Bsp119I TTCGAA 1 cut(s) 422
Bsp1286I GDGCHC 1 cut(s) 434
Bsp19I CCATGG 1 cut(s) 1125
BspACI CCGC 6 cut(s) 43, 74, 504, 556, 586, 1056
BspANI GGCC 3 cut(s) 46, 546, 1236
BspCNI CTCAG 3 cut(s) 271, 781, 1064
BspFNI CGCG 1 cut(s) 479
BspHI TCATGA 4 cut(s) 121, 328, 1012, 1147
BspLI GGNNCC 3 cut(s) 207, 486, 1235
BspPI GGATC 3 cut(s) 390, 405, 984
BspQI GCTCTTC 2 cut(s) 439, 440
BspT104I TTCGAA 1 cut(s) 422
BspT107I GGYRCC 1 cut(s) 205
BspTNI GGTCTC 1 cut(s) 546
BsrI ACTGG 2 cut(s) 285, 1182
BssECI CCNNGG 4 cut(s) 708, 1125, 1197, 1223
BssT1I CCWWGG 1 cut(s) 1125
Bst2UI CCWGG 3 cut(s) 710, 1107, 1224
Bst4CI ACNGT 1 cut(s) 302
Bst6I CTCTTC 3 cut(s) 439, 440, 579
BstBI TTCGAA 1 cut(s) 422
BstC8I GCNNGC 2 cut(s) 586, 631
BstDEI CTNAG 3 cut(s) 258, 789, 1051
BstDSI CCRYGG 1 cut(s) 1125
BstF5I GGATG 1 cut(s) 806
BstFNI CGCG 1 cut(s) 479
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstMAI GTCTC 3 cut(s) 546, 576, 815
BstMWI GCNNNNNNNGC 4 cut(s) 76, 79, 259, 413
BstNI CCWGG 3 cut(s) 710, 1107, 1224
BstNSI RCATGY 1 cut(s) 613
BstSCI CCNGG 3 cut(s) 708, 1105, 1222
BstSFI CTRYAG 2 cut(s) 724, 1260
BstUI CGCG 1 cut(s) 479
BstV2I GAAGAC 1 cut(s) 1065
BstX2I RGATCY 1 cut(s) 528
BstYI RGATCY 1 cut(s) 528
BsuRI GGCC 3 cut(s) 46, 546, 1236
BtgI CCRYGG 1 cut(s) 1125
BtsCI GGATG 1 cut(s) 806
BtsI GCAGTG 1 cut(s) 762
BtsIMutI CAGTG 3 cut(s) 307, 762, 1189
Cac8I GCNNGC 2 cut(s) 586, 631
CciI TCATGA 4 cut(s) 121, 328, 1012, 1147
CfoI GCGC 1 cut(s) 29
Cfr13I GGNCC 3 cut(s) 545, 960, 1234
Csp6I GTAC 3 cut(s) 169, 839, 1022
CviQI GTAC 3 cut(s) 169, 839, 1022
DdeI CTNAG 3 cut(s) 258, 789, 1051
Eam1104I CTCTTC 3 cut(s) 439, 440, 579
EarI CTCTTC 3 cut(s) 439, 440, 579
Eco130I CCWWGG 1 cut(s) 1125
Eco31I GGTCTC 1 cut(s) 546
Eco47I GGWCC 1 cut(s) 960
Eco47III AGCGCT 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 207
EcoRI GAATTC 2 cut(s) 775, 1120
EcoRII CCWGG 3 cut(s) 708, 1105, 1222
EcoT14I CCWWGG 1 cut(s) 1125
ErhI CCWWGG 1 cut(s) 1125
FaqI GGGAC 2 cut(s) 273, 865
FauI CCCGC 2 cut(s) 497, 593
FbaI TGATCA 6 cut(s) 109, 118, 1009, 1015, 1042, 1090
FokI GGATG 1 cut(s) 793
FspBI CTAG 3 cut(s) 18, 30, 1276
GlaI GCGC 1 cut(s) 28
GsaI CCCAGC 2 cut(s) 413, 617
GsuI CTGGAG 1 cut(s) 268
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 3 cut(s) 46, 546, 1236
HhaI GCGC 1 cut(s) 29
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 2 cut(s) 814, 902
HphI GGTGA 2 cut(s) 696, 1141
Hpy166II GTNNAC 2 cut(s) 391, 783
Hpy188I TCNGA 5 cut(s) 187, 402, 790, 987, 1198
Hpy188III TCNNGA 7 cut(s) 122, 221, 329, 605, 818, 1013, 1148
Hpy8I GTNNAC 2 cut(s) 391, 783
Hpy99I CGWCG 2 cut(s) 233, 839
HpyAV CCTTC 3 cut(s) 24, 475, 1150
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4IV ACGT 1 cut(s) 837
HpyCH4V TGCA 4 cut(s) 416, 767, 806, 827
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 79, 259, 413
HpyF3I CTNAG 3 cut(s) 258, 789, 1051
HpySE526I ACGT 1 cut(s) 837
HspAI GCGC 1 cut(s) 27
Ksp22I TGATCA 6 cut(s) 109, 118, 1009, 1015, 1042, 1090
LguI GCTCTTC 2 cut(s) 439, 440
LmnI GCTCC 3 cut(s) 287, 490, 1187
LweI GCATC 3 cut(s) 208, 815, 1146
MaeI CTAG 3 cut(s) 18, 30, 1276
MaeII ACGT 1 cut(s) 837
MaeIII GTNAC 1 cut(s) 1058
MboII GAAGA 8 cut(s) 200, 426, 454, 457, 566, 593, 961, 1065
MfeI CAATTG 1 cut(s) 1094
MflI RGATCY 1 cut(s) 528
MhlI GDGCHC 1 cut(s) 434
MmeI TCCRAC 1 cut(s) 256
MseI TTAA 1 cut(s) 992
MslI CAYNNNNRTG 3 cut(s) 120, 1130, 1149
MspA1I CMGCKG 4 cut(s) 43, 79, 413, 723
MspR9I CCNGG 3 cut(s) 710, 1107, 1224
MunI CAATTG 1 cut(s) 1094
MvaI CCWGG 3 cut(s) 710, 1107, 1224
MvnI CGCG 1 cut(s) 479
MwoI GCNNNNNNNGC 4 cut(s) 76, 79, 259, 413
NcoI CCATGG 1 cut(s) 1125
NlaIV GGNNCC 3 cut(s) 207, 486, 1235
NmuCI GTSAC 1 cut(s) 1058
NspI RCATGY 1 cut(s) 613
NspV TTCGAA 1 cut(s) 422
PagI TCATGA 4 cut(s) 121, 328, 1012, 1147
PciSI GCTCTTC 2 cut(s) 439, 440
PfeI GAWTC 2 cut(s) 814, 902
PflMI CCANNNNNTGG 1 cut(s) 645
Psp6I CCWGG 3 cut(s) 708, 1105, 1222
PspFI CCCAGC 2 cut(s) 409, 613
PspGI CCWGG 3 cut(s) 708, 1105, 1222
PspN4I GGNNCC 3 cut(s) 207, 486, 1235
PspPI GGNCC 3 cut(s) 545, 960, 1234
PsuI RGATCY 1 cut(s) 528
PvuII CAGCTG 3 cut(s) 79, 413, 723
RsaI GTAC 3 cut(s) 170, 840, 1023
RsaNI GTAC 3 cut(s) 169, 839, 1022
RseI CAYNNNNRTG 3 cut(s) 120, 1130, 1149
SapI GCTCTTC 2 cut(s) 439, 440
SaqAI TTAA 1 cut(s) 992
Sau96I GGNCC 3 cut(s) 545, 960, 1234
ScaI AGTACT 1 cut(s) 170
ScrFI CCNGG 3 cut(s) 710, 1107, 1224
SduI GDGCHC 1 cut(s) 434
SfaNI GCATC 3 cut(s) 208, 815, 1146
SfcI CTRYAG 2 cut(s) 724, 1260
SfuI TTCGAA 1 cut(s) 422
SinI GGWCC 1 cut(s) 960
SmiMI CAYNNNNRTG 3 cut(s) 120, 1130, 1149
SmlI CTYRAG 2 cut(s) 540, 683
SmoI CTYRAG 2 cut(s) 540, 683
SsiI CCGC 6 cut(s) 43, 74, 504, 556, 586, 1056
SspMI CTAG 3 cut(s) 18, 30, 1276
StyD4I CCNGG 3 cut(s) 708, 1105, 1222
StyI CCWWGG 1 cut(s) 1125
TaaI ACNGT 1 cut(s) 302
TaiI ACGT 1 cut(s) 840
TaqI TCGA 7 cut(s) 84, 422, 490, 642, 845, 905, 912
TatI WGTACW 1 cut(s) 168
TauI GCSGC 2 cut(s) 46, 76
TfiI GAWTC 2 cut(s) 814, 902
Tru1I TTAA 1 cut(s) 992
Tru9I TTAA 1 cut(s) 992
TscAI CASTG 3 cut(s) 307, 769, 1189
TseFI GTSAC 1 cut(s) 1058
Tsp45I GTSAC 1 cut(s) 1058
TspDTI ATGAA 4 cut(s) 138, 311, 788, 1133
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 3 cut(s) 307, 769, 1189
Van91I CCANNNNNTGG 1 cut(s) 645
VpaK11BI GGWCC 1 cut(s) 960
XapI RAATTY 4 cut(s) 775, 988, 1120, 1192
XceI RCATGY 1 cut(s) 613
XcmI CCANNNNNNNNNTGG 1 cut(s) 970
XspI CTAG 3 cut(s) 18, 30, 1276
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.