Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0014202

Physical Location & Seq

Genomic Coordinates Forward (+)

56845634 .. 56847543

Gene Structure 1910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G030150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGTATCCTCTTCTTGGCAACAACACTACTACTAATGATGAAAACTCATCATCACAGCCTCATCATCCTCACCTCTACGACTACAACTCACCTTTTCTTCAAGATCACGACGGAGTAGTCCTGAGCTACTTGCTTTCGCAGCAGCAGTTCTTAATGATTGACACTAATTCATCTCAGTCGGCTGAAATCAGCGTCGCCGCTTCAAACCAAGGGCTAACGGAGGAGAAGATCCACAGCTCGAAGAAGAAGAAAAAGGCGGCAGCTCCGAGAAAGAGAAGCAGTGGAAAGAAGGATCGGCACAGCAAGATCTGCACGGCTCAGGGCCCGAGAGACCGGAGGATGAGACTGTCGGTTCAGATCGCCCGGAAGTTCTTTGATCTTCAAGACATGCTTGGTTTCGACAAGGCGAGCAAGACCATTGACTGGCTCTTCACAAAGTCCAAGTCTGCCATCAAGGAACTGAAGCAACACGTGGTCTTGCCGAGTTGCAGTATTAGCACCATTGGTACGGCAAAGCACATTAACTCCCTCTCCACTTCTACCGAGAGTAATGAAGTTGTATCTAAGACAATGCAGACTCATTGTGCTCTTAAGGGTGAATCTTCCATCAGCAGAATGAATAGAGATCCGAAAAAGAACACGAGAAGATTATGTTTGGTTGGGAAGGGATCGAGGGACGAGGCAAGAGCAAGGGCAAGAGAAAGAACAAGGGAGAAAATGAGGATCAGATCAAGCTGCCAAACTAGTCAGGATGAAGCAAACCCTAAGGATCTAGGGTTGTGCTTTGGGGAGGAAGCTGAGAAACACATCAATCGCGAATTGCTTGAACAAGGTGGAACAAATTCCATGATGAAGAGCAATGCTGATGATCACAAAACTCTCATGGGAAGATCAATTAGTGCATTGAGAAGCAGGCCAAGTTTTGAGGATGAAGGGGGTGAATTTCCAGGTTTTACTGGGAATTGGGCTACCAAGATGCAGTCATTTCACCGCAAGATGACAACAAACGTGATCAAGTCATTTACAGGTAACAACGTGCTGCAAGTAGAAAACCCTAGTACACCAATGATGGGCATAACCACCAAACAACAAGAGCCTAGTAGTACTACTAATTCACTTCTCTCTTTCAATAGTTCAAATTCCCAAGAACAAAAGTATTCTGGTACTTCAATTTCCATCACTCCCATACCAAAACTAAACGCACAAGAATTACTAAACCCTTGCTCAATAAATTTCATGCCCAACCAAGACCAAGACCATGACCATAACCCTAATTCAATTTTCATAACCACCTCGATTTCTCAAGATCAAAACCCAGGCCCCCCGTTCCTCAAGTTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:0140110 GO:1900618 GO:1903506 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

447

Amino Acids

49.95

Weight (kDa)

9.4

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	95 - 241	2.7e-44	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68800 AT1G68800
fragaria_vesca	FvH4_4g28170 FvH4_4g28170 FvH4_4g28170
malus_domestica	MD13G1047200.v1.1 MD16G1049000.v1.1
prunus_persica	Prupe.1G304700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0435921
rosa_laevigata	RLG00000006548
rosa_multiflora	Rmu_sc0003165.1_g000002
rosa_roxburghii	Rroxscaffold_5G00377100
rosa_rugosa	Rorug04G0290700
rosa_samantha	Rh4BG353900 Rh4CG368300 Rh4DG347700
rosa_wichuraiana	Rw4G030150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	116
AccB7I	CCANNNNNTGG	1 cut(s)	423
AccII	CGCG	1 cut(s)	816
AciI	CCGC	3 cut(s)	198, 257, 991
AclWI	GGATC	6 cut(s)	223, 300, 620, 676, 731, 777
AcsI	RAATTY	4 cut(s)	841, 941, 1138, 1231
AcuI	CTGAAG	1 cut(s)	482
AcvI	CACGTG	1 cut(s)	472
AfaI	GTAC	4 cut(s)	508, 1060, 1105, 1165
AfiI	CCNNNNNNNGG	3 cut(s)	14, 423, 1070
AflII	CTTAAG	1 cut(s)	590
AflIII	ACRYGT	1 cut(s)	469
AgsI	TTSAA	8 cut(s)	101, 204, 383, 827, 1129, 1137, 1170, 1278
AhlI	ACTAGT	1 cut(s)	743
AjnI	CCWGG	2 cut(s)	946, 1315
AluBI	AGCT	5 cut(s)	126, 237, 263, 735, 797
AluI	AGCT	5 cut(s)	126, 237, 263, 735, 797
Alw21I	GWGCWC	1 cut(s)	589
Alw26I	GTCTC	2 cut(s)	324, 337
AlwI	GGATC	6 cut(s)	223, 300, 620, 676, 731, 777
Ama87I	CYCGRG	1 cut(s)	325
AoxI	GGCC	3 cut(s)	322, 914, 1318
ApaI	GGGCCC	1 cut(s)	326
ApeKI	GCWGC	5 cut(s)	139, 142, 260, 735, 1039
ApoI	RAATTY	4 cut(s)	841, 941, 1138, 1231
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
Asp700I	GAANNNNTTC	1 cut(s)	841
AspS9I	GGNCC	3 cut(s)	322, 323, 1319
AsuC2I	CCSGG	1 cut(s)	364
AsuHPI	GGTGA	5 cut(s)	62, 81, 608, 950, 980
AvaI	CYCGRG	1 cut(s)	325
AxyI	CCTNAGG	1 cut(s)	765
BaeGI	GKGCMC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	326
BauI	CACGAG	1 cut(s)	640
BbrPI	CACGTG	1 cut(s)	472
Bbv12I	GWGCWC	1 cut(s)	589
BbvI	GCAGC	5 cut(s)	151, 154, 272, 722, 1026
BccI	CCATC	4 cut(s)	458, 614, 1063, 1184
BceAI	ACGGC	2 cut(s)	330, 525
BciT130I	CCWGG	2 cut(s)	948, 1317
BciVI	GTATCC	1 cut(s)	15
BclI	TGATCA	2 cut(s)	868, 1011
BcnI	CCSGG	1 cut(s)	364
BcoDI	GTCTC	2 cut(s)	324, 337
BcuI	ACTAGT	1 cut(s)	743
BfaI	CTAG	4 cut(s)	744, 773, 1056, 1098
BfrI	CTTAAG	1 cut(s)	590
BfuI	GTATCC	1 cut(s)	15
BglII	AGATCT	1 cut(s)	306
BisI	GCNGC	7 cut(s)	140, 143, 198, 258, 261, 736, 1040
BlsI	GCNGC	7 cut(s)	141, 144, 199, 259, 262, 737, 1041
BmcAI	AGTACT	1 cut(s)	1105
Bme1390I	CCNGG	3 cut(s)	364, 948, 1317
BmeT110I	CYCGRG	1 cut(s)	325
BmgT120I	GGNCC	3 cut(s)	322, 323, 1319
BmiI	GGNNCC	2 cut(s)	324, 1321
BmrFI	CCNGG	3 cut(s)	364, 948, 1317
BmrI	ACTGGG	1 cut(s)	966
BmsI	GCATC	1 cut(s)	966
BmuI	ACTGGG	1 cut(s)	966
Bpu10I	CCTNAGC	2 cut(s)	122, 318
BpuEI	CTTGAG	2 cut(s)	1287, 1316
BpuMI	CCSGG	1 cut(s)	364
BsaAI	YACGTR	1 cut(s)	472
BsaI	GGTCTC	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	208, 1315
BsaWI	WCCGGW	1 cut(s)	333
BsaXI	ACNNNNNCTCC	4 cut(s)	509, 515, 539, 545
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 423, 1070
Bse1I	ACTGG	2 cut(s)	428, 961
Bse21I	CCTNAGG	1 cut(s)	765
Bse3DI	GCAATG	1 cut(s)	865
BseBI	CCWGG	2 cut(s)	948, 1317
BseDI	CCNNGG	2 cut(s)	208, 1315
BseGI	GGATG	4 cut(s)	64, 345, 757, 934
BseLI	CCNNNNNNNGG	3 cut(s)	14, 423, 1070
BseMI	GCAATG	1 cut(s)	865
BseMII	CTCAG	4 cut(s)	113, 188, 332, 789
BseNI	ACTGG	2 cut(s)	428, 961
BseRI	GAGGAG	1 cut(s)	236
BseSI	GKGCMC	1 cut(s)	326
BseXI	GCAGC	5 cut(s)	151, 154, 272, 722, 1026
BsgI	GTGCAG	1 cut(s)	295
Bsh1236I	CGCG	1 cut(s)	816
BshFI	GGCC	3 cut(s)	324, 916, 1320
BsiHKAI	GWGCWC	1 cut(s)	589
BsiHKCI	CYCGRG	1 cut(s)	325
BsiSI	CCGG	2 cut(s)	334, 364
BslFI	GGGAC	1 cut(s)	689
BslI	CCNNNNNNNGG	3 cut(s)	14, 423, 1070
BsmAI	GTCTC	2 cut(s)	324, 337
BsmFI	GGGAC	1 cut(s)	689
BsnI	GGCC	3 cut(s)	324, 916, 1320
Bso31I	GGTCTC	1 cut(s)	324
BsoBI	CYCGRG	1 cut(s)	325
Bsp120I	GGGCCC	1 cut(s)	322
Bsp1286I	GDGCHC	2 cut(s)	326, 589
Bsp68I	TCGCGA	1 cut(s)	816
BspACI	CCGC	3 cut(s)	198, 257, 991
BspANI	GGCC	3 cut(s)	324, 916, 1320
BspCNI	CTCAG	4 cut(s)	114, 187, 331, 790
BspFNI	CGCG	1 cut(s)	816
BspLI	GGNNCC	2 cut(s)	324, 1321
BspPI	GGATC	6 cut(s)	223, 300, 620, 676, 731, 777
BspQI	GCTCTTC	2 cut(s)	434, 848
BspTI	CTTAAG	1 cut(s)	590
BspTNI	GGTCTC	1 cut(s)	324
BsrDI	GCAATG	1 cut(s)	865
BsrI	ACTGG	2 cut(s)	428, 961
BssECI	CCNNGG	2 cut(s)	208, 1315
BssSI	CACGAG	1 cut(s)	640
BssT1I	CCWWGG	1 cut(s)	208
Bst2BI	CACGAG	1 cut(s)	640
Bst2UI	CCWGG	2 cut(s)	948, 1317
Bst4CI	ACNGT	1 cut(s)	348
Bst6I	CTCTTC	3 cut(s)	15, 434, 848
BstAFI	CTTAAG	1 cut(s)	590
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstBAI	YACGTR	1 cut(s)	472
BstC8I	GCNNGC	2 cut(s)	409, 914
BstDEI	CTNAG	6 cut(s)	122, 174, 318, 564, 765, 798
BstF5I	GGATG	4 cut(s)	64, 345, 757, 934
BstFNI	CGCG	1 cut(s)	816
BstMAI	GTCTC	2 cut(s)	324, 337
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 309, 495
BstNI	CCWGG	2 cut(s)	948, 1317
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	3 cut(s)	362, 946, 1315
BstSLI	GKGCMC	1 cut(s)	326
BstUI	CGCG	1 cut(s)	816
BstV1I	GCAGC	5 cut(s)	151, 154, 272, 722, 1026
BstX2I	RGATCY	4 cut(s)	228, 306, 625, 769
BstYI	RGATCY	4 cut(s)	228, 306, 625, 769
Bsu36I	CCTNAGG	1 cut(s)	765
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	3 cut(s)	324, 916, 1320
BtsCI	GGATG	4 cut(s)	64, 345, 757, 934
BtsI	GCAGTG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	286
BtuMI	TCGCGA	1 cut(s)	816
Cac8I	GCNNGC	2 cut(s)	409, 914
Cfr13I	GGNCC	3 cut(s)	322, 323, 1319
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	4 cut(s)	507, 1059, 1104, 1164
CviAII	CATG	5 cut(s)	388, 847, 883, 1237, 1259
CviQI	GTAC	4 cut(s)	507, 1059, 1104, 1164
DdeI	CTNAG	6 cut(s)	122, 174, 318, 564, 765, 798
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
Eam1104I	CTCTTC	3 cut(s)	15, 434, 848
EarI	CTCTTC	3 cut(s)	15, 434, 848
Eco130I	CCWWGG	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	326
Eco31I	GGTCTC	1 cut(s)	324
Eco57I	CTGAAG	1 cut(s)	482
Eco72I	CACGTG	1 cut(s)	472
Eco81I	CCTNAGG	1 cut(s)	765
Eco88I	CYCGRG	1 cut(s)	325
EcoO109I	RGGNCCY	2 cut(s)	322, 1319
EcoRII	CCWGG	2 cut(s)	946, 1315
EcoT14I	CCWWGG	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	5 cut(s)	391, 850, 886, 1240, 1262
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FaqI	GGGAC	1 cut(s)	689
FatI	CATG	5 cut(s)	387, 846, 882, 1236, 1258
FbaI	TGATCA	2 cut(s)	868, 1011
Fnu4HI	GCNGC	7 cut(s)	140, 143, 198, 258, 261, 736, 1040
FokI	GGATG	4 cut(s)	51, 352, 764, 941
FriOI	GRGCYC	1 cut(s)	326
Fsp4HI	GCNGC	7 cut(s)	140, 143, 198, 258, 261, 736, 1040
FspBI	CTAG	4 cut(s)	744, 773, 1056, 1098
GluI	GCNGC	7 cut(s)	140, 143, 198, 258, 261, 736, 1040
HaeIII	GGCC	3 cut(s)	324, 916, 1320
HapII	CCGG	2 cut(s)	334, 364
HgaI	GACGC	1 cut(s)	181
Hin1II	CATG	5 cut(s)	391, 850, 886, 1240, 1262
HinfI	GANTC	2 cut(s)	577, 599
HpaII	CCGG	2 cut(s)	334, 364
HphI	GGTGA	5 cut(s)	62, 81, 608, 950, 980
Hpy166II	GTNNAC	1 cut(s)	1061
Hpy188I	TCNGA	4 cut(s)	267, 357, 630, 728
Hpy188III	TCNNGA	7 cut(s)	101, 107, 121, 383, 749, 815, 1304
Hpy8I	GTNNAC	1 cut(s)	1061
Hpy99I	CGWCG	2 cut(s)	113, 197
HpyAV	CCTTC	3 cut(s)	283, 658, 926
HpyCH4III	ACNGT	1 cut(s)	348
HpyCH4IV	ACGT	3 cut(s)	471, 1008, 1035
HpyCH4V	TGCA	6 cut(s)	312, 489, 574, 902, 979, 1042
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 309, 495
HpyF3I	CTNAG	6 cut(s)	122, 174, 318, 564, 765, 798
HpySE526I	ACGT	3 cut(s)	471, 1008, 1035
Hsp92II	CATG	5 cut(s)	391, 850, 886, 1240, 1262
Ksp22I	TGATCA	2 cut(s)	868, 1011
LguI	GCTCTTC	2 cut(s)	434, 848
LmnI	GCTCC	1 cut(s)	268
Lsp1109I	GCAGC	5 cut(s)	151, 154, 272, 722, 1026
LweI	GCATC	1 cut(s)	966
MaeI	CTAG	4 cut(s)	744, 773, 1056, 1098
MaeII	ACGT	3 cut(s)	471, 1008, 1035
MaeIII	GTNAC	1 cut(s)	1028
MflI	RGATCY	4 cut(s)	228, 306, 625, 769
MhlI	GDGCHC	2 cut(s)	326, 589
MlyI	GAGTC	1 cut(s)	571
MroXI	GAANNNNTTC	1 cut(s)	841
MseI	TTAA	4 cut(s)	152, 522, 591, 1338
MspCI	CTTAAG	1 cut(s)	590
MspI	CCGG	2 cut(s)	334, 364
MspR9I	CCNGG	3 cut(s)	364, 948, 1317
MvaI	CCWGG	2 cut(s)	948, 1317
MvnI	CGCG	1 cut(s)	816
MwoI	GCNNNNNNNGC	3 cut(s)	139, 309, 495
NciI	CCSGG	1 cut(s)	364
NlaIII	CATG	5 cut(s)	391, 850, 886, 1240, 1262
NlaIV	GGNNCC	2 cut(s)	324, 1321
NmeAIII	GCCGAG	1 cut(s)	507
NruI	TCGCGA	1 cut(s)	816
NspI	RCATGY	1 cut(s)	391
PciSI	GCTCTTC	2 cut(s)	434, 848
PdmI	GAANNNNTTC	1 cut(s)	841
PfeI	GAWTC	1 cut(s)	599
PflMI	CCANNNNNTGG	1 cut(s)	423
PkrI	GCNGC	7 cut(s)	141, 144, 199, 259, 262, 737, 1041
PleI	GAGTC	1 cut(s)	571
PmaCI	CACGTG	1 cut(s)	472
PmlI	CACGTG	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	571
Ppu21I	YACGTR	1 cut(s)	472
Psp6I	CCWGG	2 cut(s)	946, 1315
PspCI	CACGTG	1 cut(s)	472
PspGI	CCWGG	2 cut(s)	946, 1315
PspN4I	GGNNCC	2 cut(s)	324, 1321
PspOMI	GGGCCC	1 cut(s)	322
PspPI	GGNCC	3 cut(s)	322, 323, 1319
PsuI	RGATCY	4 cut(s)	228, 306, 625, 769
RruI	TCGCGA	1 cut(s)	816
RsaI	GTAC	4 cut(s)	508, 1060, 1105, 1165
RsaNI	GTAC	4 cut(s)	507, 1059, 1104, 1164
SapI	GCTCTTC	2 cut(s)	434, 848
SaqAI	TTAA	4 cut(s)	152, 522, 591, 1338
SatI	GCNGC	7 cut(s)	140, 143, 198, 258, 261, 736, 1040
Sau96I	GGNCC	3 cut(s)	322, 323, 1319
ScaI	AGTACT	1 cut(s)	1105
SchI	GAGTC	1 cut(s)	571
ScrFI	CCNGG	3 cut(s)	364, 948, 1317
SduI	GDGCHC	2 cut(s)	326, 589
SfaNI	GCATC	1 cut(s)	966
SmlI	CTYRAG	3 cut(s)	590, 1302, 1331
SmoI	CTYRAG	3 cut(s)	590, 1302, 1331
SpeI	ACTAGT	1 cut(s)	743
SsiI	CCGC	3 cut(s)	198, 257, 991
SspMI	CTAG	4 cut(s)	744, 773, 1056, 1098
StyD4I	CCNGG	3 cut(s)	362, 946, 1315
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	348
TaiI	ACGT	3 cut(s)	474, 1011, 1038
TaqI	TCGA	4 cut(s)	239, 399, 671, 1295
TatI	WGTACW	2 cut(s)	1058, 1103
TauI	GCSGC	2 cut(s)	200, 260
TfiI	GAWTC	1 cut(s)	599
Tru1I	TTAA	4 cut(s)	152, 522, 591, 1338
Tru9I	TTAA	4 cut(s)	152, 522, 591, 1338
TscAI	CASTG	1 cut(s)	286
TseI	GCWGC	5 cut(s)	139, 142, 260, 735, 1039
TspDTI	ATGAA	9 cut(s)	54, 159, 567, 632, 768, 866, 945, 1225, 1273
TspGWI	ACGGA	2 cut(s)	126, 233
TspRI	CASTG	1 cut(s)	286
Van91I	CCANNNNNTGG	1 cut(s)	423
Vha464I	CTTAAG	1 cut(s)	590
XapI	RAATTY	4 cut(s)	841, 941, 1138, 1231
XceI	RCATGY	1 cut(s)	391
XmnI	GAANNNNTTC	1 cut(s)	841
XspI	CTAG	4 cut(s)	744, 773, 1056, 1098
ZrmI	AGTACT	1 cut(s)	1105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.