MD16G1049000.v1.1
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0014202
Physical Location & Seq
Forward (+)
3451626 .. 3453011
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1049000.v1.1.491

Sequence Viewer

Length: 1386 bp
ATGGTTTCTTCTAGCAGCACCACAAGTAATTTCCAGCTACCTTTTCTATGTGATGACAACCAGACAAATGCTATTATTGATGATTTTCATCAAAACCCTAATTCAATATTATCACATGGTGGCCATCATCAATACTATTCACAGTACTACTACTCTGAAGACCAGCAGCAGCAGGCACCTGAGTTTCTTGAGCATGATGGAATGCTCTTGAGCTACTTGCTATCTCAACAGCAGCTCTTGCTTGGCAGCTTCAGTACTACTACTAATGTAGCGACTGATTACAACCCCACTCGAGCTCACGAGAGCACTGAAATTAGCATCGCGGCTTCAAATTCAAACAAAGCAATGGAGGTTATCCATCGTGACTATGAAGATGGTCGCAATGAGCTCACCATTAACACGGCTGCAGCTTCAAAGATTAAGATAAATAATGTGAAGATTAATGGAGGAGGAGGAGGAGGAGAGAAAAAGGCAAATGTTGCTCGAAAGAGAGCGAGTGGGAAAAAAGACAGACACAGCAAGATCTACACAGCTCAAGGCCCGAGAGACCGGAGAATGAGGCTGTCCGTCCAAATTGCCCGTAAGTTCTTTGATCTTCAAGACACGTTGGGATTTGACAAAGCCAGCAAAACAATTGAGTGGCTTTTCACAAAGTCCAAGAGCGCCATCAAGGACCTCAAGCAGCACCTCCTCGTCTCACCCAAGGAAGATTACAACAGCACAAATGGTGGTGCAACTGCAAAGGTGAATTCATCTGAGAATACTACCGGTGAAGTCGCATCGAGAATTATGGAGCCTAGTAGTAGTGATGCAAACGGTGACATTTCCGTTGGGTTCGGTAGAGAGAAAAGGAACAGGAAGTTGTGCGTGGTTGCGAGGGAATCAAGGGTGGAGGCAAGAGCAAGGGCAAGGGAGAGAACAAGGGAGAAGATGATGAGGATCAGAGGGTTTGATCAAGATCATCAACATTTAACAAAGCAAAGTCCTAAGCATCAAGAACAACAAAACCCTAATGAATTGTTTGAAACAGCTGGAATGATGAACTCAACGATGATGAGCACTAATTGTCGCAACGATGGTCAGAAAATTGTGGGCAGAACAAGTAGTGGTTGTGGTGGTGCACAAAGATCGTTGTTGAATTTTGATTTTTGGCGACATGTTTCAGAGGCAAGTGGAGCAAATTCCGAGGATTGTGGTTTTCCAGGGAATTGGGGAGCAATCAACTACACCAAGAATATTATTACAGGTAACGTGCTGCAAGTAGAGCAAAACCCTACCTCATACCCAAAACAACAGAACCCTAGATCAATTTTTGGGGAAGGTACACAAGAGCAAAACCCTAATTCAATTTTTCTCACCACCTTTATCAAGGCTCAAGACCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

462

Amino Acids

51.45

Weight (kDa)

8.88

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 167 - 312 1.3e-42 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68800 AT1G68800
fragaria_vesca FvH4_4g28170 FvH4_4g28170 FvH4_4g28170
malus_domestica MD13G1047200.v1.1 MD16G1049000.v1.1
prunus_persica Prupe.1G304700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0435921
rosa_laevigata RLG00000006548
rosa_multiflora Rmu_sc0003165.1_g000002
rosa_roxburghii Rroxscaffold_5G00377100
rosa_rugosa Rorug04G0290700
rosa_samantha Rh4BG353900 Rh4CG368300 Rh4DG347700
rosa_wichuraiana Rw4G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 175
AccII CGCG 1 cut(s) 323
AciI CCGC 1 cut(s) 323
AclWI GGATC 1 cut(s) 947
AcoI YGGCCR 1 cut(s) 121
AcsI RAATTY 4 cut(s) 331, 748, 1138, 1180
AcuI CTGAAG 2 cut(s) 177, 235
AdeI CACNNNGTG 1 cut(s) 119
AfaI GTAC 3 cut(s) 146, 256, 1324
AflIII ACRYGT 2 cut(s) 603, 1156
AgeI ACCGGT 1 cut(s) 767
AgsI TTSAA 8 cut(s) 105, 330, 336, 414, 599, 1025, 1138, 1347
AjnI CCWGG 1 cut(s) 1201
AluBI AGCT 9 cut(s) 37, 213, 235, 249, 296, 388, 410, 533, 1031
AluI AGCT 9 cut(s) 37, 213, 235, 249, 296, 388, 410, 533, 1031
Alw21I GWGCWC 5 cut(s) 298, 308, 390, 1061, 1123
Alw26I GTCTC 2 cut(s) 540, 700
Alw44I GTGCAC 1 cut(s) 1119
AlwI GGATC 1 cut(s) 947
Ama87I CYCGRG 2 cut(s) 291, 541
AoxI GGCC 2 cut(s) 121, 538
ApaLI GTGCAC 1 cut(s) 1119
ApeKI GCWGC 9 cut(s) 15, 166, 169, 232, 246, 404, 407, 682, 1255
ApoI RAATTY 4 cut(s) 331, 748, 1138, 1180
AseI ATTAAT 1 cut(s) 441
AsiGI ACCGGT 1 cut(s) 767
AspLEI GCGC 1 cut(s) 665
AspS9I GGNCC 2 cut(s) 539, 673
AsuHPI GGTGA 6 cut(s) 382, 690, 757, 782, 830, 1348
AvaI CYCGRG 2 cut(s) 291, 541
AvaII GGWCC 1 cut(s) 673
BaeGI GKGCMC 1 cut(s) 1123
BalI TGGCCA 1 cut(s) 123
BanI GGYRCC 1 cut(s) 175
BanII GRGCYC 2 cut(s) 298, 390
BauI CACGAG 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 5 cut(s) 298, 308, 390, 1061, 1123
BbvI GCAGC 9 cut(s) 27, 178, 181, 244, 258, 391, 419, 694, 1242
BccI CCATC 6 cut(s) 132, 191, 366, 368, 674, 1070
BceAI ACGGC 1 cut(s) 417
BcgI CGANNNNNNTGC 2 cut(s) 1110, 1144
BciT130I CCWGG 1 cut(s) 1203
BclI TGATCA 1 cut(s) 952
BcoDI GTCTC 2 cut(s) 540, 700
BfaI CTAG 3 cut(s) 12, 798, 1302
BfmI CTRYAG 1 cut(s) 405
BfoI RGCGCY 1 cut(s) 666
BglII AGATCT 1 cut(s) 522
BmcAI AGTACT 2 cut(s) 146, 256
Bme1390I CCNGG 1 cut(s) 1203
Bme18I GGWCC 1 cut(s) 673
BmeT110I CYCGRG 2 cut(s) 291, 541
BmgT120I GGNCC 2 cut(s) 539, 673
BmiI GGNNCC 2 cut(s) 177, 795
BmrFI CCNGG 1 cut(s) 1203
BmsI GCATC 4 cut(s) 327, 788, 799, 1000
BpiI GAAGAC 1 cut(s) 165
Bpu10I CCTNAGC 1 cut(s) 987
BpuEI CTTGAG 5 cut(s) 209, 229, 519, 662, 1359
BsaBI GATNNNNATC 3 cut(s) 87, 938, 957
BsaI GGTCTC 1 cut(s) 540
BsaJI CCNNGG 3 cut(s) 702, 1185, 1202
BsaWI WCCGGW 2 cut(s) 549, 767
Bse118I RCCGGY 1 cut(s) 767
Bse3DI GCAATG 2 cut(s) 351, 388
Bse8I GATNNNNATC 3 cut(s) 87, 938, 957
BseBI CCWGG 1 cut(s) 1203
BseDI CCNNGG 3 cut(s) 702, 1185, 1202
BseJI GATNNNNATC 3 cut(s) 87, 938, 957
BseMI GCAATG 2 cut(s) 351, 388
BseMII CTCAG 2 cut(s) 171, 747
BseRI GAGGAG 6 cut(s) 462, 465, 468, 471, 474, 680
BseSI GKGCMC 1 cut(s) 1123
BseXI GCAGC 9 cut(s) 27, 178, 181, 244, 258, 391, 419, 694, 1242
Bsh1236I CGCG 1 cut(s) 323
BshFI GGCC 2 cut(s) 123, 540
BshNI GGYRCC 1 cut(s) 175
BshTI ACCGGT 1 cut(s) 767
BsiHKAI GWGCWC 5 cut(s) 298, 308, 390, 1061, 1123
BsiHKCI CYCGRG 2 cut(s) 291, 541
BsiSI CCGG 2 cut(s) 550, 768
BsmAI GTCTC 2 cut(s) 540, 700
BsmBI CGTCTC 1 cut(s) 700
BsmI GAATGC 1 cut(s) 207
BsnI GGCC 2 cut(s) 123, 540
Bso31I GGTCTC 1 cut(s) 540
BsoBI CYCGRG 2 cut(s) 291, 541
Bsp1286I GDGCHC 5 cut(s) 298, 308, 390, 1061, 1123
Bsp143I GATC 7 cut(s) 522, 592, 939, 952, 958, 1127, 1304
BspACI CCGC 1 cut(s) 323
BspANI GGCC 2 cut(s) 123, 540
BspCNI CTCAG 2 cut(s) 172, 748
BspFNI CGCG 1 cut(s) 323
BspLI GGNNCC 2 cut(s) 177, 795
BspMAI CTGCAG 1 cut(s) 409
BspPI GGATC 1 cut(s) 947
BspT107I GGYRCC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 540
BsrDI GCAATG 2 cut(s) 351, 388
BsrFI RCCGGY 1 cut(s) 767
BssAI RCCGGY 1 cut(s) 767
BssECI CCNNGG 3 cut(s) 702, 1185, 1202
BssMI GATC 7 cut(s) 522, 592, 939, 952, 958, 1127, 1304
BssSI CACGAG 1 cut(s) 299
BssT1I CCWWGG 1 cut(s) 702
Bst2BI CACGAG 1 cut(s) 299
Bst2UI CCWGG 1 cut(s) 1203
Bst4CI ACNGT 2 cut(s) 144, 818
BstAPI GCANNNNNTGC 2 cut(s) 238, 479
BstC8I GCNNGC 2 cut(s) 174, 625
BstDEI CTNAG 3 cut(s) 180, 756, 987
BstFNI CGCG 1 cut(s) 323
BstH2I RGCGCY 1 cut(s) 666
BstHHI GCGC 1 cut(s) 665
BstKTI GATC 7 cut(s) 525, 595, 942, 955, 961, 1130, 1307
BstMAI GTCTC 2 cut(s) 540, 700
BstMBI GATC 7 cut(s) 522, 592, 939, 952, 958, 1127, 1304
BstMWI GCNNNNNNNGC 4 cut(s) 238, 479, 1175, 1264
BstNI CCWGG 1 cut(s) 1203
BstNSI RCATGY 1 cut(s) 1160
BstSCI CCNGG 1 cut(s) 1201
BstSFI CTRYAG 1 cut(s) 405
BstSLI GKGCMC 1 cut(s) 1123
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 9 cut(s) 27, 178, 181, 244, 258, 391, 419, 694, 1242
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 522
BstXI CCANNNNNNTGG 1 cut(s) 1209
BstYI RGATCY 1 cut(s) 522
BsuRI GGCC 2 cut(s) 123, 540
BtgZI GCGATG 1 cut(s) 304
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 2 cut(s) 174, 625
CfoI GCGC 1 cut(s) 665
Cfr10I RCCGGY 1 cut(s) 767
Cfr13I GGNCC 2 cut(s) 539, 673
Csp6I GTAC 3 cut(s) 145, 255, 1323
CspAI ACCGGT 1 cut(s) 767
CviAII CATG 3 cut(s) 116, 194, 1157
CviQI GTAC 3 cut(s) 145, 255, 1323
DdeI CTNAG 3 cut(s) 180, 756, 987
DpnI GATC 7 cut(s) 524, 594, 941, 954, 960, 1129, 1306
DpnII GATC 7 cut(s) 522, 592, 939, 952, 958, 1127, 1304
DraIII CACNNNGTG 1 cut(s) 119
EaeI YGGCCR 1 cut(s) 121
Ecl136II GAGCTC 2 cut(s) 296, 388
Eco130I CCWWGG 1 cut(s) 702
Eco24I GRGCYC 2 cut(s) 298, 390
Eco31I GGTCTC 1 cut(s) 540
Eco47I GGWCC 1 cut(s) 673
Eco53kI GAGCTC 2 cut(s) 296, 388
Eco57I CTGAAG 2 cut(s) 177, 235
Eco88I CYCGRG 2 cut(s) 291, 541
EcoICRI GAGCTC 2 cut(s) 296, 388
EcoO109I RGGNCCY 1 cut(s) 673
EcoRI GAATTC 1 cut(s) 748
EcoRII CCWGG 1 cut(s) 1201
EcoT14I CCWWGG 1 cut(s) 702
EcoT38I GRGCYC 2 cut(s) 298, 390
ErhI CCWWGG 1 cut(s) 702
Esp3I CGTCTC 1 cut(s) 700
FaeI CATG 3 cut(s) 119, 197, 1160
FaiI YATR 8 cut(s) 49, 117, 195, 369, 791, 1158, 1282, 1384
FatI CATG 3 cut(s) 115, 193, 1156
FbaI TGATCA 1 cut(s) 952
FriOI GRGCYC 2 cut(s) 298, 390
FspBI CTAG 3 cut(s) 12, 798, 1302
GlaI GCGC 1 cut(s) 664
HaeII RGCGCY 1 cut(s) 666
HaeIII GGCC 2 cut(s) 123, 540
HapII CCGG 2 cut(s) 550, 768
HhaI GCGC 1 cut(s) 665
Hin1II CATG 3 cut(s) 119, 197, 1160
Hin6I GCGC 1 cut(s) 663
HinP1I GCGC 1 cut(s) 663
HinfI GANTC 1 cut(s) 881
HpaII CCGG 2 cut(s) 550, 768
HphI GGTGA 6 cut(s) 382, 690, 757, 782, 830, 1348
Hpy166II GTNNAC 2 cut(s) 1121, 1325
Hpy188I TCNGA 6 cut(s) 157, 757, 944, 1083, 1165, 1186
Hpy188III TCNNGA 9 cut(s) 188, 208, 299, 362, 599, 783, 956, 995, 1376
Hpy8I GTNNAC 2 cut(s) 1121, 1325
HpyAV CCTTC 1 cut(s) 1313
HpyCH4III ACNGT 2 cut(s) 144, 818
HpyCH4IV ACGT 2 cut(s) 605, 1251
HpyCH4V TGCA 6 cut(s) 407, 734, 740, 812, 1121, 1258
HpyF10VI GCNNNNNNNGC 4 cut(s) 238, 479, 1175, 1264
HpyF3I CTNAG 3 cut(s) 180, 756, 987
HpySE526I ACGT 2 cut(s) 605, 1251
Hsp92II CATG 3 cut(s) 119, 197, 1160
HspAI GCGC 1 cut(s) 663
Ksp22I TGATCA 1 cut(s) 952
Kzo9I GATC 7 cut(s) 522, 592, 939, 952, 958, 1127, 1304
LmnI GCTCC 3 cut(s) 793, 1175, 1214
Lsp1109I GCAGC 9 cut(s) 27, 178, 181, 244, 258, 391, 419, 694, 1242
LweI GCATC 4 cut(s) 327, 788, 799, 1000
MaeI CTAG 3 cut(s) 12, 798, 1302
MaeII ACGT 2 cut(s) 605, 1251
MaeIII GTNAC 3 cut(s) 362, 818, 1247
MalI GATC 7 cut(s) 524, 594, 941, 954, 960, 1129, 1306
MboI GATC 7 cut(s) 522, 592, 939, 952, 958, 1127, 1304
MboII GAAGA 6 cut(s) 170, 383, 448, 587, 719, 940
MfeI CAATTG 1 cut(s) 633
MflI RGATCY 1 cut(s) 522
MhlI GDGCHC 5 cut(s) 298, 308, 390, 1061, 1123
MlsI TGGCCA 1 cut(s) 123
MluNI TGGCCA 1 cut(s) 123
Mox20I TGGCCA 1 cut(s) 123
MscI TGGCCA 1 cut(s) 123
MseI TTAA 4 cut(s) 396, 420, 441, 971
Msp20I TGGCCA 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 1031
MspI CCGG 2 cut(s) 550, 768
MspR9I CCNGG 1 cut(s) 1203
MunI CAATTG 1 cut(s) 633
Mva1269I GAATGC 1 cut(s) 207
MvaI CCWGG 1 cut(s) 1203
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 4 cut(s) 238, 479, 1175, 1264
NdeII GATC 7 cut(s) 522, 592, 939, 952, 958, 1127, 1304
NlaIII CATG 3 cut(s) 119, 197, 1160
NlaIV GGNNCC 2 cut(s) 177, 795
NmuCI GTSAC 2 cut(s) 362, 818
NspI RCATGY 1 cut(s) 1160
PaeR7I CTCGAG 1 cut(s) 291
PciI ACATGT 1 cut(s) 1156
PctI GAATGC 1 cut(s) 207
PfeI GAWTC 1 cut(s) 881
PinAI ACCGGT 1 cut(s) 767
PpuMI RGGWCCY 1 cut(s) 673
PscI ACATGT 1 cut(s) 1156
PshBI ATTAAT 1 cut(s) 441
Psp124BI GAGCTC 2 cut(s) 298, 390
Psp5II RGGWCCY 1 cut(s) 673
Psp6I CCWGG 1 cut(s) 1201
PspGI CCWGG 1 cut(s) 1201
PspN4I GGNNCC 2 cut(s) 177, 795
PspPI GGNCC 2 cut(s) 539, 673
PspPPI RGGWCCY 1 cut(s) 673
PspXI VCTCGAGB 1 cut(s) 291
PstI CTGCAG 1 cut(s) 409
PsuI RGATCY 1 cut(s) 522
PvuII CAGCTG 1 cut(s) 1031
RsaI GTAC 3 cut(s) 146, 256, 1324
RsaNI GTAC 3 cut(s) 145, 255, 1323
SacI GAGCTC 2 cut(s) 298, 390
SaqAI TTAA 4 cut(s) 396, 420, 441, 971
Sau3AI GATC 7 cut(s) 522, 592, 939, 952, 958, 1127, 1304
Sau96I GGNCC 2 cut(s) 539, 673
ScaI AGTACT 2 cut(s) 146, 256
ScrFI CCNGG 1 cut(s) 1203
SduI GDGCHC 5 cut(s) 298, 308, 390, 1061, 1123
SfaNI GCATC 4 cut(s) 327, 788, 799, 1000
SfcI CTRYAG 1 cut(s) 405
Sfr274I CTCGAG 1 cut(s) 291
SinI GGWCC 1 cut(s) 673
SlaI CTCGAG 1 cut(s) 291
SmlI CTYRAG 6 cut(s) 188, 208, 291, 534, 677, 1374
SmoI CTYRAG 6 cut(s) 188, 208, 291, 534, 677, 1374
SsiI CCGC 1 cut(s) 323
SspI AATATT 2 cut(s) 108, 1237
SspMI CTAG 3 cut(s) 12, 798, 1302
SstI GAGCTC 2 cut(s) 298, 390
StyD4I CCNGG 1 cut(s) 1201
StyI CCWWGG 1 cut(s) 702
TaaI ACNGT 2 cut(s) 144, 818
TaiI ACGT 2 cut(s) 608, 1254
TaqI TCGA 3 cut(s) 292, 484, 782
TatI WGTACW 2 cut(s) 144, 254
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 1 cut(s) 881
Tru1I TTAA 4 cut(s) 396, 420, 441, 971
Tru9I TTAA 4 cut(s) 396, 420, 441, 971
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 2 cut(s) 362, 818
TseI GCWGC 9 cut(s) 15, 166, 169, 232, 246, 404, 407, 682, 1255
Tsp45I GTSAC 2 cut(s) 362, 818
TspDTI ATGAA 5 cut(s) 77, 384, 741, 1029, 1055
TspGWI ACGGA 2 cut(s) 556, 817
TspRI CASTG 1 cut(s) 313
VneI GTGCAC 1 cut(s) 1119
VpaK11BI GGWCC 1 cut(s) 673
VspI ATTAAT 1 cut(s) 441
XapI RAATTY 4 cut(s) 331, 748, 1138, 1180
XceI RCATGY 1 cut(s) 1160
XhoI CTCGAG 1 cut(s) 291
XspI CTAG 3 cut(s) 12, 798, 1302
ZrmI AGTACT 2 cut(s) 146, 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.