FvH4_4g28170
TCP Family

TCP family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014202
Physical Location & Seq
Forward (+)
28883113 .. 28885289
2177 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28170.t2

Sequence Viewer

Length: 1245 bp
ATGTATCCTCTTCTTGGCAACATGACTAGCACTCATGATGAAAGCTCATCATCACAGCCTCATCATCCTCACCACGACTACAACTCATCTTATTTTCAAGATCACGACGGAGTAGTGCTGAGCTACTTGCTTTCGCAGCAGCTCGACACTGATTCATCTCAGTCTGCTGACATCAGCGTCGCGGCTTCAAACCAAGGGCTAATAATGGAGGAGGAGAAGATTCAGAGCTCGAAGAAGAAAAGAAAGGCGGCGGCGGCACCAAGGAAGAGAAGCAGTGGGAAGAAGGACCGGCACAGCAAGATCTACACGGCTCAGGGCCCGAGAGATCGGAGGATGAGGCTGTCGGTTCAGATCGCCCGCAAGTTCTTTGATCTTCAAGACATGCTTGGTTTCGACAAGGCCAGCAAGACCATCGACTGGCTCTTCACAAAGTCCAGGTCTGCCATCAACGAACTGAAGCAACAGTTAGTCTTGCGGACTTGCAGTACTATTAACTCCCTCTCTACTTCTGCTGAGAGCAATGAAGTTGTATCTCAGACAATGCAGGATCTTAAGAGTGACTCTTCCATCGGCAGAATGATCAATCCCAGGAAGAACATTAGAAGATATAGGGTTGGGAAGGGGTCGAGGGACCAGGCGAGAGCAAGGGCGAGAGAAAGAACAAGGCAGAAGCTAAGGATCAGATTAAGCTGCCAAGCTAATCACGATGAGGCAAACCCTAAGGATCTAGGGTTGTTATGCTTGGGGGAGGAAGCTGAGAAACACACCAATCACGAGTTGATTGAACAAGGTCGAACGAATTCCATGATGAGGAACAATGCTGATGATCACAAAACTCTCATGGGAAGATCAATTAGTGCTAGAAGCAGGGCACGTTTCGAGGATGATGGTTGTGAATTTCCGGGTTTTACTGGGAATTGGGGTAACAAGATGCAGTCTATTCATCCCCGCAAGATGACAAGGAACGTGACCGAGTCATTTACAGGTAACAACCTGCTACAAGTAGAAAACCCTAGTACACCAATTATGGGCTTAACCTCCAAATATCAAGAGCCTAGCAGTACTACTACTTCACGTCTCTCTTTCAGTAGTTCAAATTCTCAAGAGCAGAGCTATTCTGGTACTTATTCGAACTCTTGCCCCATTAATTTCATGCCCAACCAAGACCATAACCCTAATCCAATCTTCATTGCCACCTTAATTTCTCCGGACCAAAACCCAGGCCAGTTCCTCAAGTTTAACTGA

Protein Analysis

415

Amino Acids

46.76

Weight (kDa)

9.55

Isoelectric Point (pI)

50.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 93 - 225 2.8e-39 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68800 AT1G68800
fragaria_vesca FvH4_4g28170 FvH4_4g28170 FvH4_4g28170
malus_domestica MD13G1047200.v1.1 MD16G1049000.v1.1
prunus_persica Prupe.1G304700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0435921
rosa_laevigata RLG00000006548
rosa_multiflora Rmu_sc0003165.1_g000002
rosa_roxburghii Rroxscaffold_5G00377100
rosa_rugosa Rorug04G0290700
rosa_samantha Rh4BG353900 Rh4CG368300 Rh4DG347700
rosa_wichuraiana Rw4G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 1002
AccB1I GGYRCC 1 cut(s) 256
AccB7I CCANNNNNTGG 1 cut(s) 417
AccII CGCG 1 cut(s) 182
AccIII TCCGGA 1 cut(s) 1207
AciI CCGC 7 cut(s) 182, 248, 251, 254, 358, 475, 949
AclWI GGATC 3 cut(s) 555, 686, 732
AcsI RAATTY 3 cut(s) 799, 896, 1096
AcuI CTGAAG 1 cut(s) 476
AfaI GTAC 4 cut(s) 487, 1018, 1063, 1123
AfiI CCNNNNNNNGG 4 cut(s) 14, 417, 810, 1028
AflII CTTAAG 1 cut(s) 551
AgsI TTSAA 5 cut(s) 98, 189, 377, 785, 1095
AjiI CACGTC 1 cut(s) 1076
AjnI CCWGG 4 cut(s) 434, 587, 633, 1219
AluBI AGCT 9 cut(s) 45, 123, 142, 228, 673, 690, 698, 755, 1113
AluI AGCT 9 cut(s) 45, 123, 142, 228, 673, 690, 698, 755, 1113
Alw21I GWGCWC 1 cut(s) 230
Alw26I GTCTC 1 cut(s) 1082
AlwI GGATC 3 cut(s) 555, 686, 732
Ama87I CYCGRG 1 cut(s) 319
Aor13HI TCCGGA 1 cut(s) 1207
AoxI GGCC 3 cut(s) 316, 399, 1222
ApaI GGGCCC 1 cut(s) 320
ApeKI GCWGC 3 cut(s) 136, 139, 690
ApoI RAATTY 3 cut(s) 799, 896, 1096
ArsI GACNNNNNNTTYG 2 cut(s) 422, 454
AseI ATTAAT 1 cut(s) 1146
Asp700I GAANNNNTTC 1 cut(s) 799
AspS9I GGNCC 5 cut(s) 286, 316, 317, 631, 1210
AsuC2I CCSGG 1 cut(s) 903
AsuHPI GGTGA 1 cut(s) 62
AsuII TTCGAA 1 cut(s) 1130
AvaI CYCGRG 1 cut(s) 319
AvaII GGWCC 3 cut(s) 286, 631, 1210
AxyI CCTNAGG 1 cut(s) 720
BaeGI GKGCMC 2 cut(s) 320, 874
BanI GGYRCC 1 cut(s) 256
BanII GRGCYC 2 cut(s) 230, 320
BarI GAAGNNNNNNTAC 2 cut(s) 1054, 1086
BauI CACGAG 1 cut(s) 773
Bbv12I GWGCWC 1 cut(s) 230
BbvI GCAGC 3 cut(s) 148, 151, 677
BccI CCATC 4 cut(s) 419, 452, 575, 881
BceAI ACGGC 1 cut(s) 324
BcgI CGANNNNNNTGC 2 cut(s) 394, 428
BciT130I CCWGG 4 cut(s) 436, 589, 635, 1221
BciVI GTATCC 1 cut(s) 15
BclI TGATCA 2 cut(s) 579, 826
BcnI CCSGG 1 cut(s) 903
BcoDI GTCTC 1 cut(s) 1082
BfaI CTAG 5 cut(s) 27, 728, 861, 1014, 1056
BfrI CTTAAG 1 cut(s) 551
BfuAI ACCTGC 1 cut(s) 1002
BfuI GTATCC 1 cut(s) 15
BglII AGATCT 1 cut(s) 300
BisI GCNGC 7 cut(s) 137, 140, 183, 249, 252, 255, 691
BlpI GCTNAGC 1 cut(s) 119
BlsI GCNGC 7 cut(s) 138, 141, 184, 250, 253, 256, 692
BmcAI AGTACT 2 cut(s) 487, 1063
Bme1390I CCNGG 5 cut(s) 436, 589, 635, 903, 1221
Bme18I GGWCC 3 cut(s) 286, 631, 1210
BmeT110I CYCGRG 1 cut(s) 319
BmgBI CACGTC 1 cut(s) 1076
BmgT120I GGNCC 5 cut(s) 286, 316, 317, 631, 1210
BmiI GGNNCC 3 cut(s) 258, 318, 632
BmrFI CCNGG 5 cut(s) 436, 589, 635, 903, 1221
BmrI ACTGGG 1 cut(s) 921
BmsI GCATC 1 cut(s) 921
BmuI ACTGGG 1 cut(s) 921
Bpu10I CCTNAGC 2 cut(s) 312, 674
Bpu1102I GCTNAGC 1 cut(s) 119
Bpu14I TTCGAA 1 cut(s) 1130
BpuEI CTTGAG 2 cut(s) 1086, 1217
BpuMI CCSGG 1 cut(s) 903
BsaJI CCNNGG 4 cut(s) 193, 260, 587, 1219
BsaWI WCCGGW 1 cut(s) 1207
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 417, 810, 1028
Bse118I RCCGGY 1 cut(s) 288
Bse1I ACTGG 3 cut(s) 422, 916, 1225
Bse21I CCTNAGG 1 cut(s) 720
Bse3DI GCAATG 2 cut(s) 526, 1188
BseAI TCCGGA 1 cut(s) 1207
BseBI CCWGG 4 cut(s) 436, 589, 635, 1221
BseDI CCNNGG 4 cut(s) 193, 260, 587, 1219
BseGI GGATG 4 cut(s) 64, 339, 889, 943
BseLI CCNNNNNNNGG 4 cut(s) 14, 417, 810, 1028
BseMI GCAATG 2 cut(s) 526, 1188
BseMII CTCAG 6 cut(s) 110, 173, 326, 504, 548, 747
BseNI ACTGG 3 cut(s) 422, 916, 1225
BseRI GAGGAG 2 cut(s) 224, 227
BseSI GKGCMC 2 cut(s) 320, 874
BseXI GCAGC 3 cut(s) 148, 151, 677
Bsh1236I CGCG 1 cut(s) 182
BshFI GGCC 3 cut(s) 318, 401, 1224
BshNI GGYRCC 1 cut(s) 256
BsiHKAI GWGCWC 1 cut(s) 230
BsiHKCI CYCGRG 1 cut(s) 319
BsiSI CCGG 3 cut(s) 289, 902, 1208
BslFI GGGAC 1 cut(s) 644
BslI CCNNNNNNNGG 4 cut(s) 14, 417, 810, 1028
BsmAI GTCTC 1 cut(s) 1082
BsmBI CGTCTC 1 cut(s) 1082
BsmFI GGGAC 1 cut(s) 644
BsnI GGCC 3 cut(s) 318, 401, 1224
BsoBI CYCGRG 1 cut(s) 319
Bsp119I TTCGAA 1 cut(s) 1130
Bsp120I GGGCCC 1 cut(s) 316
Bsp1286I GDGCHC 3 cut(s) 230, 320, 874
Bsp13I TCCGGA 1 cut(s) 1207
Bsp1720I GCTNAGC 1 cut(s) 119
BspACI CCGC 7 cut(s) 182, 248, 251, 254, 358, 475, 949
BspANI GGCC 3 cut(s) 318, 401, 1224
BspCNI CTCAG 6 cut(s) 111, 172, 325, 505, 547, 748
BspEI TCCGGA 1 cut(s) 1207
BspFNI CGCG 1 cut(s) 182
BspHI TCATGA 1 cut(s) 34
BspLI GGNNCC 3 cut(s) 258, 318, 632
BspMI ACCTGC 1 cut(s) 1002
BspPI GGATC 3 cut(s) 555, 686, 732
BspQI GCTCTTC 1 cut(s) 428
BspT104I TTCGAA 1 cut(s) 1130
BspT107I GGYRCC 1 cut(s) 256
BspTI CTTAAG 1 cut(s) 551
BsrDI GCAATG 2 cut(s) 526, 1188
BsrFI RCCGGY 1 cut(s) 288
BsrI ACTGG 3 cut(s) 422, 916, 1225
BssAI RCCGGY 1 cut(s) 288
BssECI CCNNGG 4 cut(s) 193, 260, 587, 1219
BssSI CACGAG 1 cut(s) 773
BssT1I CCWWGG 2 cut(s) 193, 260
Bst2BI CACGAG 1 cut(s) 773
Bst2UI CCWGG 4 cut(s) 436, 589, 635, 1221
Bst4CI ACNGT 1 cut(s) 465
Bst6I CTCTTC 4 cut(s) 15, 260, 428, 568
BstAFI CTTAAG 1 cut(s) 551
BstBI TTCGAA 1 cut(s) 1130
BstC8I GCNNGC 2 cut(s) 358, 403
BstDEI CTNAG 8 cut(s) 119, 159, 312, 513, 534, 674, 720, 756
BstF5I GGATG 4 cut(s) 64, 339, 889, 943
BstFNI CGCG 1 cut(s) 182
BstMAI GTCTC 1 cut(s) 1082
BstMWI GCNNNNNNNGC 2 cut(s) 136, 254
BstNI CCWGG 4 cut(s) 436, 589, 635, 1221
BstNSI RCATGY 1 cut(s) 385
BstSCI CCNGG 5 cut(s) 434, 587, 633, 901, 1219
BstSLI GKGCMC 2 cut(s) 320, 874
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 3 cut(s) 148, 151, 677
BstX2I RGATCY 3 cut(s) 300, 547, 724
BstYI RGATCY 3 cut(s) 300, 547, 724
Bsu36I CCTNAGG 1 cut(s) 720
BsuI GTATCC 1 cut(s) 15
BsuRI GGCC 3 cut(s) 318, 401, 1224
BtrI CACGTC 1 cut(s) 1076
BtsCI GGATG 4 cut(s) 64, 339, 889, 943
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 2 cut(s) 147, 280
BveI ACCTGC 1 cut(s) 1002
Cac8I GCNNGC 2 cut(s) 358, 403
CciI TCATGA 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 288
Cfr13I GGNCC 5 cut(s) 286, 316, 317, 631, 1210
CseI GACGC 1 cut(s) 166
Csp6I GTAC 4 cut(s) 486, 1017, 1062, 1122
CviAII CATG 6 cut(s) 22, 35, 382, 805, 841, 1153
CviQI GTAC 4 cut(s) 486, 1017, 1062, 1122
DdeI CTNAG 8 cut(s) 119, 159, 312, 513, 534, 674, 720, 756
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
Eam1104I CTCTTC 4 cut(s) 15, 260, 428, 568
EarI CTCTTC 4 cut(s) 15, 260, 428, 568
Ecl136II GAGCTC 1 cut(s) 228
Eco130I CCWWGG 2 cut(s) 193, 260
Eco24I GRGCYC 2 cut(s) 230, 320
Eco47I GGWCC 3 cut(s) 286, 631, 1210
Eco53kI GAGCTC 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 476
Eco81I CCTNAGG 1 cut(s) 720
Eco88I CYCGRG 1 cut(s) 319
EcoICRI GAGCTC 1 cut(s) 228
EcoO109I RGGNCCY 1 cut(s) 316
EcoRI GAATTC 1 cut(s) 799
EcoRII CCWGG 4 cut(s) 434, 587, 633, 1219
EcoT14I CCWWGG 2 cut(s) 193, 260
EcoT38I GRGCYC 2 cut(s) 230, 320
ErhI CCWWGG 2 cut(s) 193, 260
Esp3I CGTCTC 1 cut(s) 1082
FaeI CATG 6 cut(s) 25, 38, 385, 808, 844, 1156
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 1 cut(s) 644
FatI CATG 6 cut(s) 21, 34, 381, 804, 840, 1152
FauI CCCGC 2 cut(s) 365, 956
FbaI TGATCA 2 cut(s) 579, 826
Fnu4HI GCNGC 7 cut(s) 137, 140, 183, 249, 252, 255, 691
FokI GGATG 4 cut(s) 51, 346, 896, 930
FriOI GRGCYC 2 cut(s) 230, 320
Fsp4HI GCNGC 7 cut(s) 137, 140, 183, 249, 252, 255, 691
FspBI CTAG 5 cut(s) 27, 728, 861, 1014, 1056
GluI GCNGC 7 cut(s) 137, 140, 183, 249, 252, 255, 691
HaeIII GGCC 3 cut(s) 318, 401, 1224
HapII CCGG 3 cut(s) 289, 902, 1208
HgaI GACGC 1 cut(s) 166
Hin1II CATG 6 cut(s) 25, 38, 385, 808, 844, 1156
HinfI GANTC 4 cut(s) 152, 220, 560, 974
HpaII CCGG 3 cut(s) 289, 902, 1208
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 1 cut(s) 1019
Hpy188I TCNGA 5 cut(s) 225, 330, 351, 537, 683
Hpy188III TCNNGA 9 cut(s) 35, 98, 104, 377, 704, 773, 1049, 1103, 1208
Hpy8I GTNNAC 1 cut(s) 1019
Hpy99I CGWCG 2 cut(s) 110, 182
HpyAV CCTTC 2 cut(s) 277, 613
HpyCH4III ACNGT 1 cut(s) 465
HpyCH4IV ACGT 3 cut(s) 874, 966, 1075
HpyCH4V TGCA 3 cut(s) 483, 544, 934
HpyF10VI GCNNNNNNNGC 2 cut(s) 136, 254
HpyF3I CTNAG 8 cut(s) 119, 159, 312, 513, 534, 674, 720, 756
HpySE526I ACGT 3 cut(s) 874, 966, 1075
Hsp92II CATG 6 cut(s) 25, 38, 385, 808, 844, 1156
Kpn2I TCCGGA 1 cut(s) 1207
Ksp22I TGATCA 2 cut(s) 579, 826
LguI GCTCTTC 1 cut(s) 428
Lsp1109I GCAGC 3 cut(s) 148, 151, 677
LweI GCATC 1 cut(s) 921
MaeI CTAG 5 cut(s) 27, 728, 861, 1014, 1056
MaeII ACGT 3 cut(s) 874, 966, 1075
MaeIII GTNAC 4 cut(s) 557, 923, 967, 986
MflI RGATCY 3 cut(s) 300, 547, 724
MhlI GDGCHC 3 cut(s) 230, 320, 874
MluCI AATT 8 cut(s) 799, 852, 896, 916, 1023, 1096, 1147, 1200
MlyI GAGTC 2 cut(s) 554, 983
MroI TCCGGA 1 cut(s) 1207
MroXI GAANNNNTTC 1 cut(s) 799
MseI TTAA 7 cut(s) 492, 552, 686, 1034, 1146, 1199, 1239
MspCI CTTAAG 1 cut(s) 551
MspI CCGG 3 cut(s) 289, 902, 1208
MspR9I CCNGG 5 cut(s) 436, 589, 635, 903, 1221
MvaI CCWGG 4 cut(s) 436, 589, 635, 1221
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 2 cut(s) 136, 254
NciI CCSGG 1 cut(s) 903
NlaIII CATG 6 cut(s) 25, 38, 385, 808, 844, 1156
NlaIV GGNNCC 3 cut(s) 258, 318, 632
NmuCI GTSAC 2 cut(s) 557, 967
NspI RCATGY 1 cut(s) 385
NspV TTCGAA 1 cut(s) 1130
PagI TCATGA 1 cut(s) 34
PciSI GCTCTTC 1 cut(s) 428
PdmI GAANNNNTTC 1 cut(s) 799
PfeI GAWTC 2 cut(s) 152, 220
PflFI GACNNNGTC 1 cut(s) 973
PflMI CCANNNNNTGG 1 cut(s) 417
PkrI GCNGC 7 cut(s) 138, 141, 184, 250, 253, 256, 692
PleI GAGTC 2 cut(s) 554, 982
PpsI GAGTC 2 cut(s) 554, 982
PshBI ATTAAT 1 cut(s) 1146
Psp124BI GAGCTC 1 cut(s) 230
Psp6I CCWGG 4 cut(s) 434, 587, 633, 1219
PspGI CCWGG 4 cut(s) 434, 587, 633, 1219
PspN4I GGNNCC 3 cut(s) 258, 318, 632
PspOMI GGGCCC 1 cut(s) 316
PspPI GGNCC 5 cut(s) 286, 316, 317, 631, 1210
PsuI RGATCY 3 cut(s) 300, 547, 724
PsyI GACNNNGTC 1 cut(s) 973
RsaI GTAC 4 cut(s) 487, 1018, 1063, 1123
RsaNI GTAC 4 cut(s) 486, 1017, 1062, 1122
SacI GAGCTC 1 cut(s) 230
SapI GCTCTTC 1 cut(s) 428
SaqAI TTAA 7 cut(s) 492, 552, 686, 1034, 1146, 1199, 1239
SatI GCNGC 7 cut(s) 137, 140, 183, 249, 252, 255, 691
Sau96I GGNCC 5 cut(s) 286, 316, 317, 631, 1210
ScaI AGTACT 2 cut(s) 487, 1063
SchI GAGTC 2 cut(s) 554, 983
ScrFI CCNGG 5 cut(s) 436, 589, 635, 903, 1221
SduI GDGCHC 3 cut(s) 230, 320, 874
SfaNI GCATC 1 cut(s) 921
SfuI TTCGAA 1 cut(s) 1130
SinI GGWCC 3 cut(s) 286, 631, 1210
SmlI CTYRAG 3 cut(s) 551, 1101, 1232
SmoI CTYRAG 3 cut(s) 551, 1101, 1232
Sse9I AATT 8 cut(s) 799, 852, 896, 916, 1023, 1096, 1147, 1200
SsiI CCGC 7 cut(s) 182, 248, 251, 254, 358, 475, 949
SspMI CTAG 5 cut(s) 27, 728, 861, 1014, 1056
SstI GAGCTC 1 cut(s) 230
StyD4I CCNGG 5 cut(s) 434, 587, 633, 901, 1219
StyI CCWWGG 2 cut(s) 193, 260
TaaI ACNGT 1 cut(s) 465
TaiI ACGT 3 cut(s) 877, 969, 1078
TaqI TCGA 8 cut(s) 144, 230, 393, 414, 626, 793, 879, 1130
TaqII GACCGA 1 cut(s) 986
TasI AATT 8 cut(s) 799, 852, 896, 916, 1023, 1096, 1147, 1200
TatI WGTACW 3 cut(s) 485, 1016, 1061
TauI GCSGC 4 cut(s) 185, 251, 254, 257
TfiI GAWTC 2 cut(s) 152, 220
Tru1I TTAA 7 cut(s) 492, 552, 686, 1034, 1146, 1199, 1239
Tru9I TTAA 7 cut(s) 492, 552, 686, 1034, 1146, 1199, 1239
TscAI CASTG 2 cut(s) 154, 280
TseFI GTSAC 2 cut(s) 557, 967
TseI GCWGC 3 cut(s) 136, 139, 690
Tsp45I GTSAC 2 cut(s) 557, 967
TspDTI ATGAA 6 cut(s) 54, 144, 537, 932, 1141, 1177
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 2 cut(s) 154, 280
Tth111I GACNNNGTC 1 cut(s) 973
Van91I CCANNNNNTGG 1 cut(s) 417
Vha464I CTTAAG 1 cut(s) 551
VpaK11BI GGWCC 3 cut(s) 286, 631, 1210
VspI ATTAAT 1 cut(s) 1146
XapI RAATTY 3 cut(s) 799, 896, 1096
XceI RCATGY 1 cut(s) 385
XmnI GAANNNNTTC 1 cut(s) 799
XspI CTAG 5 cut(s) 27, 728, 861, 1014, 1056
ZrmI AGTACT 2 cut(s) 487, 1063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.