RLG00000006548
TCP Family

TCP family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0014202
Physical Location & Seq
Reverse (-)
8336553 .. 8337887
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006548

Sequence Viewer

Length: 1335 bp
ATGTATCCTCTTCTTGGCAACAAAACTACTACTAATGATGAAAACTCATCATCACAACCTCATCATCCTCACCTCTACGACTACAACTCACCTTTTCTTCAAGATCACGACGGAGTAGTCCTGAGTTACTTGCTTTCGCAGCAGCAGTTCTTAATGATTGACACTAATTCATCTCAGTCGGCTGAAATCAGCGTCGCCGCTTCAAACCAAGGGCTAACTGAGGAGAAGATCCACAGCTCGAAGAAGAAGAAAAAGGCGGCAGCTCCGAGAAAGAGAAGCAGTGGAAAGAAGGATCGGCACAGCAAGATCTGCACGGCTCAGGGCCCGAGAGACCGGAGGATGAGACTGTCGGTTCAGATCGCCCGGAAGTTCTTTGATCTTCAAGACATGCTTGGTTTCGACAAGGCGAGCAAGACCATCGACTGGCTCTTCACAAAGTCCAAGTCTGCCATCAAGGAACTGAAGCAACACGTGGTCTTGCCGAGTTGCAGTATTAGCACCATTGGTACGGCAAAGCACATTAACTCCCTCTCTACTTCTACCGAGAGTAATGAAGTTGTATCTAAGACAATGCAGACTCATTGTGCTCTTAAGGGTGAATCTTCCATAAGCAGAATGAATGGAGATCCGAAAAAGAACACGAGAAGATTATGTTTGGTTGGGAAGGGATCGAGGGACGAGGCAAGAGCAAGGGCAAGAGAAAGAACAAGGGAGAAAATGAGGATCAGATCAGGCTGCCAAACTAGTCAGGATGAAGCAAACCCTAAGGATCTAGGGTTGTGCTTTGGGGAGGAAGCTGAGAAACACATCAATCGCGAATTGCTTGAACAAGGTGGAAAAAATTCCATGATGAAGAGCAATGCTGATGATCACAAAACTCTGATGGGAAGATCAATTAGTGCATCGAGAAGCAGGCCAAGTTTTGAGGATGAAGGGGGTGAATTTCCGGGTTTTACTGGGAATTGGGCTACCAAGATGCAGTCATTTCACCGCAAGATGACAACAAACGTGATCAAGTCATTTACAGGTAACAACGTGCTGCAAGTAGAAAACCCTAGTACACCAATGATGGGCATAACCACCAAACAACAAGAGCCTAGTAGTACTACTAATTCACTTCTCTCTTTCAGTAGTTCAAATTCCCAAGAACAAAACCATTCTGGTACTTCAATTTCCATCACTCCCACACCAAAACCAAACGCACAAGAATTACTAAACCCTTGCTCAATAAATTTCATGCCCAACCAAGACCAAGACCATAACCCTAATTCAATTTTCATAACCACCTCTATTTCTCAAGATCAAAACCCAGGCCCGTTCCTCAAGTATAACTGA

Protein Analysis

445

Amino Acids

49.41

Weight (kDa)

9.44

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 95 - 241 2.1e-44 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68800 AT1G68800
fragaria_vesca FvH4_4g28170 FvH4_4g28170 FvH4_4g28170
malus_domestica MD13G1047200.v1.1 MD16G1049000.v1.1
prunus_persica Prupe.1G304700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0435921
rosa_laevigata RLG00000006548
rosa_multiflora Rmu_sc0003165.1_g000002
rosa_roxburghii Rroxscaffold_5G00377100
rosa_rugosa Rorug04G0290700
rosa_samantha Rh4BG353900 Rh4CG368300 Rh4DG347700
rosa_wichuraiana Rw4G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AccB7I CCANNNNNTGG 1 cut(s) 423
AccII CGCG 1 cut(s) 816
AciI CCGC 3 cut(s) 198, 257, 991
AclWI GGATC 6 cut(s) 223, 300, 620, 676, 731, 777
AcsI RAATTY 4 cut(s) 841, 941, 1138, 1231
AcuI CTGAAG 1 cut(s) 482
AcvI CACGTG 1 cut(s) 472
AfaI GTAC 4 cut(s) 508, 1060, 1105, 1165
AfiI CCNNNNNNNGG 3 cut(s) 14, 423, 1070
AflII CTTAAG 1 cut(s) 590
AflIII ACRYGT 1 cut(s) 469
AgsI TTSAA 7 cut(s) 101, 204, 383, 827, 1137, 1170, 1272
AhlI ACTAGT 1 cut(s) 743
AjnI CCWGG 1 cut(s) 1309
AluBI AGCT 3 cut(s) 237, 263, 797
AluI AGCT 3 cut(s) 237, 263, 797
Alw21I GWGCWC 1 cut(s) 589
Alw26I GTCTC 2 cut(s) 324, 337
AlwI GGATC 6 cut(s) 223, 300, 620, 676, 731, 777
Ama87I CYCGRG 1 cut(s) 325
AoxI GGCC 3 cut(s) 322, 914, 1312
ApaI GGGCCC 1 cut(s) 326
ApeKI GCWGC 5 cut(s) 139, 142, 260, 735, 1039
ApoI RAATTY 4 cut(s) 841, 941, 1138, 1231
ArsI GACNNNNNNTTYG 2 cut(s) 428, 460
Asp700I GAANNNNTTC 1 cut(s) 841
AspS9I GGNCC 3 cut(s) 322, 323, 1313
AsuC2I CCSGG 2 cut(s) 364, 948
AsuHPI GGTGA 5 cut(s) 62, 81, 608, 950, 980
AvaI CYCGRG 1 cut(s) 325
AxyI CCTNAGG 1 cut(s) 765
BaeGI GKGCMC 1 cut(s) 326
BanII GRGCYC 1 cut(s) 326
BauI CACGAG 1 cut(s) 640
BbrPI CACGTG 1 cut(s) 472
Bbv12I GWGCWC 1 cut(s) 589
BbvI GCAGC 5 cut(s) 151, 154, 272, 722, 1026
BccI CCATC 5 cut(s) 425, 458, 877, 1063, 1184
BceAI ACGGC 2 cut(s) 330, 525
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BciT130I CCWGG 1 cut(s) 1311
BciVI GTATCC 1 cut(s) 15
BclI TGATCA 2 cut(s) 868, 1011
BcnI CCSGG 2 cut(s) 364, 948
BcoDI GTCTC 2 cut(s) 324, 337
BcuI ACTAGT 1 cut(s) 743
BfaI CTAG 4 cut(s) 744, 773, 1056, 1098
BfrI CTTAAG 1 cut(s) 590
BfuI GTATCC 1 cut(s) 15
BglII AGATCT 1 cut(s) 306
BisI GCNGC 7 cut(s) 140, 143, 198, 258, 261, 736, 1040
BlsI GCNGC 7 cut(s) 141, 144, 199, 259, 262, 737, 1041
BmcAI AGTACT 1 cut(s) 1105
Bme1390I CCNGG 3 cut(s) 364, 948, 1311
BmeT110I CYCGRG 1 cut(s) 325
BmgT120I GGNCC 3 cut(s) 322, 323, 1313
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 3 cut(s) 364, 948, 1311
BmrI ACTGGG 1 cut(s) 966
BmsI GCATC 2 cut(s) 911, 966
BmuI ACTGGG 1 cut(s) 966
Bpu10I CCTNAGC 1 cut(s) 318
BpuEI CTTGAG 2 cut(s) 1281, 1307
BpuMI CCSGG 2 cut(s) 364, 948
BsaAI YACGTR 1 cut(s) 472
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 208, 1309
BsaWI WCCGGW 1 cut(s) 333
BsaXI ACNNNNNCTCC 2 cut(s) 509, 539
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 423, 1070
Bse1I ACTGG 2 cut(s) 428, 961
Bse21I CCTNAGG 1 cut(s) 765
Bse3DI GCAATG 1 cut(s) 865
BseBI CCWGG 1 cut(s) 1311
BseDI CCNNGG 2 cut(s) 208, 1309
BseGI GGATG 4 cut(s) 64, 345, 757, 934
BseLI CCNNNNNNNGG 3 cut(s) 14, 423, 1070
BseMI GCAATG 1 cut(s) 865
BseMII CTCAG 5 cut(s) 113, 188, 210, 332, 789
BseNI ACTGG 2 cut(s) 428, 961
BseRI GAGGAG 1 cut(s) 236
BseSI GKGCMC 1 cut(s) 326
BseXI GCAGC 5 cut(s) 151, 154, 272, 722, 1026
BsgI GTGCAG 1 cut(s) 295
Bsh1236I CGCG 1 cut(s) 816
BshFI GGCC 3 cut(s) 324, 916, 1314
BsiHKAI GWGCWC 1 cut(s) 589
BsiHKCI CYCGRG 1 cut(s) 325
BsiSI CCGG 3 cut(s) 334, 364, 947
BslFI GGGAC 1 cut(s) 689
BslI CCNNNNNNNGG 3 cut(s) 14, 423, 1070
BsmAI GTCTC 2 cut(s) 324, 337
BsmFI GGGAC 1 cut(s) 689
BsnI GGCC 3 cut(s) 324, 916, 1314
Bso31I GGTCTC 1 cut(s) 324
BsoBI CYCGRG 1 cut(s) 325
Bsp120I GGGCCC 1 cut(s) 322
Bsp1286I GDGCHC 2 cut(s) 326, 589
Bsp68I TCGCGA 1 cut(s) 816
BspACI CCGC 3 cut(s) 198, 257, 991
BspANI GGCC 3 cut(s) 324, 916, 1314
BspCNI CTCAG 5 cut(s) 114, 187, 211, 331, 790
BspFNI CGCG 1 cut(s) 816
BspLI GGNNCC 1 cut(s) 324
BspPI GGATC 6 cut(s) 223, 300, 620, 676, 731, 777
BspQI GCTCTTC 2 cut(s) 434, 848
BspTI CTTAAG 1 cut(s) 590
BspTNI GGTCTC 1 cut(s) 324
BsrDI GCAATG 1 cut(s) 865
BsrI ACTGG 2 cut(s) 428, 961
BssECI CCNNGG 2 cut(s) 208, 1309
BssSI CACGAG 1 cut(s) 640
BssT1I CCWWGG 1 cut(s) 208
Bst2BI CACGAG 1 cut(s) 640
Bst2UI CCWGG 1 cut(s) 1311
Bst4CI ACNGT 1 cut(s) 348
Bst6I CTCTTC 3 cut(s) 15, 434, 848
BstAFI CTTAAG 1 cut(s) 590
BstAPI GCANNNNNTGC 1 cut(s) 309
BstBAI YACGTR 1 cut(s) 472
BstC8I GCNNGC 2 cut(s) 409, 914
BstDEI CTNAG 7 cut(s) 122, 174, 219, 318, 564, 765, 798
BstF5I GGATG 4 cut(s) 64, 345, 757, 934
BstFNI CGCG 1 cut(s) 816
BstMAI GTCTC 2 cut(s) 324, 337
BstMWI GCNNNNNNNGC 3 cut(s) 139, 309, 495
BstNI CCWGG 1 cut(s) 1311
BstNSI RCATGY 1 cut(s) 391
BstSCI CCNGG 3 cut(s) 362, 946, 1309
BstSLI GKGCMC 1 cut(s) 326
BstUI CGCG 1 cut(s) 816
BstV1I GCAGC 5 cut(s) 151, 154, 272, 722, 1026
BstX2I RGATCY 4 cut(s) 228, 306, 625, 769
BstYI RGATCY 4 cut(s) 228, 306, 625, 769
Bsu36I CCTNAGG 1 cut(s) 765
BsuI GTATCC 1 cut(s) 15
BsuRI GGCC 3 cut(s) 324, 916, 1314
BtsCI GGATG 4 cut(s) 64, 345, 757, 934
BtsI GCAGTG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 286
BtuMI TCGCGA 1 cut(s) 816
Cac8I GCNNGC 2 cut(s) 409, 914
Cfr13I GGNCC 3 cut(s) 322, 323, 1313
CseI GACGC 1 cut(s) 181
Csp6I GTAC 4 cut(s) 507, 1059, 1104, 1164
CviAII CATG 3 cut(s) 388, 847, 1237
CviQI GTAC 4 cut(s) 507, 1059, 1104, 1164
DdeI CTNAG 7 cut(s) 122, 174, 219, 318, 564, 765, 798
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
Eam1104I CTCTTC 3 cut(s) 15, 434, 848
EarI CTCTTC 3 cut(s) 15, 434, 848
Eco130I CCWWGG 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 326
Eco31I GGTCTC 1 cut(s) 324
Eco57I CTGAAG 1 cut(s) 482
Eco72I CACGTG 1 cut(s) 472
Eco81I CCTNAGG 1 cut(s) 765
Eco88I CYCGRG 1 cut(s) 325
EcoO109I RGGNCCY 1 cut(s) 322
EcoRII CCWGG 1 cut(s) 1309
EcoT14I CCWWGG 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 208
FaeI CATG 3 cut(s) 391, 850, 1240
FaiI YATR 9 cut(s) 389, 608, 652, 848, 1076, 1238, 1260, 1280, 1329
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 1 cut(s) 689
FatI CATG 3 cut(s) 387, 846, 1236
FbaI TGATCA 2 cut(s) 868, 1011
Fnu4HI GCNGC 7 cut(s) 140, 143, 198, 258, 261, 736, 1040
FokI GGATG 4 cut(s) 51, 352, 764, 941
FriOI GRGCYC 1 cut(s) 326
Fsp4HI GCNGC 7 cut(s) 140, 143, 198, 258, 261, 736, 1040
FspBI CTAG 4 cut(s) 744, 773, 1056, 1098
GluI GCNGC 7 cut(s) 140, 143, 198, 258, 261, 736, 1040
HaeIII GGCC 3 cut(s) 324, 916, 1314
HapII CCGG 3 cut(s) 334, 364, 947
HgaI GACGC 1 cut(s) 181
Hin1II CATG 3 cut(s) 391, 850, 1240
HinfI GANTC 2 cut(s) 577, 599
HpaII CCGG 3 cut(s) 334, 364, 947
HphI GGTGA 5 cut(s) 62, 81, 608, 950, 980
Hpy166II GTNNAC 1 cut(s) 1061
Hpy188I TCNGA 5 cut(s) 267, 357, 630, 728, 882
Hpy188III TCNNGA 8 cut(s) 101, 107, 121, 383, 749, 815, 906, 1298
Hpy8I GTNNAC 1 cut(s) 1061
Hpy99I CGWCG 2 cut(s) 113, 197
HpyAV CCTTC 3 cut(s) 283, 658, 926
HpyCH4III ACNGT 1 cut(s) 348
HpyCH4IV ACGT 3 cut(s) 471, 1008, 1035
HpyCH4V TGCA 6 cut(s) 312, 489, 574, 902, 979, 1042
HpyF10VI GCNNNNNNNGC 3 cut(s) 139, 309, 495
HpyF3I CTNAG 7 cut(s) 122, 174, 219, 318, 564, 765, 798
HpySE526I ACGT 3 cut(s) 471, 1008, 1035
Hsp92II CATG 3 cut(s) 391, 850, 1240
Ksp22I TGATCA 2 cut(s) 868, 1011
LguI GCTCTTC 2 cut(s) 434, 848
LmnI GCTCC 1 cut(s) 268
Lsp1109I GCAGC 5 cut(s) 151, 154, 272, 722, 1026
LweI GCATC 2 cut(s) 911, 966
MaeI CTAG 4 cut(s) 744, 773, 1056, 1098
MaeII ACGT 3 cut(s) 471, 1008, 1035
MaeIII GTNAC 2 cut(s) 125, 1028
MflI RGATCY 4 cut(s) 228, 306, 625, 769
MhlI GDGCHC 2 cut(s) 326, 589
MlyI GAGTC 1 cut(s) 571
MroXI GAANNNNTTC 1 cut(s) 841
MseI TTAA 3 cut(s) 152, 522, 591
MspCI CTTAAG 1 cut(s) 590
MspI CCGG 3 cut(s) 334, 364, 947
MspR9I CCNGG 3 cut(s) 364, 948, 1311
MvaI CCWGG 1 cut(s) 1311
MvnI CGCG 1 cut(s) 816
MwoI GCNNNNNNNGC 3 cut(s) 139, 309, 495
NciI CCSGG 2 cut(s) 364, 948
NlaIII CATG 3 cut(s) 391, 850, 1240
NlaIV GGNNCC 1 cut(s) 324
NmeAIII GCCGAG 1 cut(s) 507
NruI TCGCGA 1 cut(s) 816
NspI RCATGY 1 cut(s) 391
PciSI GCTCTTC 2 cut(s) 434, 848
PdmI GAANNNNTTC 1 cut(s) 841
PfeI GAWTC 1 cut(s) 599
PflMI CCANNNNNTGG 1 cut(s) 423
PkrI GCNGC 7 cut(s) 141, 144, 199, 259, 262, 737, 1041
PleI GAGTC 1 cut(s) 571
PmaCI CACGTG 1 cut(s) 472
PmlI CACGTG 1 cut(s) 472
PpsI GAGTC 1 cut(s) 571
Ppu21I YACGTR 1 cut(s) 472
Psp6I CCWGG 1 cut(s) 1309
PspCI CACGTG 1 cut(s) 472
PspGI CCWGG 1 cut(s) 1309
PspN4I GGNNCC 1 cut(s) 324
PspOMI GGGCCC 1 cut(s) 322
PspPI GGNCC 3 cut(s) 322, 323, 1313
PsuI RGATCY 4 cut(s) 228, 306, 625, 769
RruI TCGCGA 1 cut(s) 816
RsaI GTAC 4 cut(s) 508, 1060, 1105, 1165
RsaNI GTAC 4 cut(s) 507, 1059, 1104, 1164
SapI GCTCTTC 2 cut(s) 434, 848
SaqAI TTAA 3 cut(s) 152, 522, 591
SatI GCNGC 7 cut(s) 140, 143, 198, 258, 261, 736, 1040
Sau96I GGNCC 3 cut(s) 322, 323, 1313
ScaI AGTACT 1 cut(s) 1105
SchI GAGTC 1 cut(s) 571
ScrFI CCNGG 3 cut(s) 364, 948, 1311
SduI GDGCHC 2 cut(s) 326, 589
SfaNI GCATC 2 cut(s) 911, 966
SmlI CTYRAG 3 cut(s) 590, 1296, 1322
SmoI CTYRAG 3 cut(s) 590, 1296, 1322
SpeI ACTAGT 1 cut(s) 743
SsiI CCGC 3 cut(s) 198, 257, 991
SspMI CTAG 4 cut(s) 744, 773, 1056, 1098
StyD4I CCNGG 3 cut(s) 362, 946, 1309
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 348
TaiI ACGT 3 cut(s) 474, 1011, 1038
TaqI TCGA 5 cut(s) 239, 399, 420, 671, 905
TatI WGTACW 2 cut(s) 1058, 1103
TauI GCSGC 2 cut(s) 200, 260
TfiI GAWTC 1 cut(s) 599
Tru1I TTAA 3 cut(s) 152, 522, 591
Tru9I TTAA 3 cut(s) 152, 522, 591
TscAI CASTG 1 cut(s) 286
TseI GCWGC 5 cut(s) 139, 142, 260, 735, 1039
TspDTI ATGAA 9 cut(s) 54, 159, 567, 632, 768, 866, 945, 1225, 1267
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 1 cut(s) 286
Van91I CCANNNNNTGG 1 cut(s) 423
Vha464I CTTAAG 1 cut(s) 590
XapI RAATTY 4 cut(s) 841, 941, 1138, 1231
XceI RCATGY 1 cut(s) 391
XmnI GAANNNNTTC 1 cut(s) 841
XspI CTAG 4 cut(s) 744, 773, 1056, 1098
ZrmI AGTACT 1 cut(s) 1105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.