Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0014202

Physical Location & Seq

Genomic Coordinates Forward (+)

56941736 .. 56942500

Gene Structure 765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG347700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGCAGACTCATTGTGCTCTTAAGGGTGAATCTTCCATCAGCAGAATGAATAGAGATCCGAAAAAGAACACGAGAAGATTATGTTTGGTTGGGAAGGGATCGAGGGACGAGGCAAGAGCAAGGGCAAGAGAAAGAACAAGGGAGAAAATGAGGATCAGATCAAGCTGCCAAACTAGTCAGGATGAAGCAAACCCTAAGGATCTAGGGTTGTGCTTTGGGGAGGAAACTGAGAAACACATCAATCGCGAATTGCTTGAACAAGGTGGAACAAATTCCATGATGAAGAGCAATGCTGATGATCACAAAACTCTCATGGGAAGATCAATCAGTGCATCGAGAAGCAGGCCAAGTTTTGAGGATGAAGGGGGTGAATTTCCGGGTTTTACTGGGAATTGGGCTACCAAGATGCAGTCATTTCACCGCAAGATGACAACAAACGTGATCAAGTCATTTACAGGTAACAACGTGCTGCAAGTAGAAAACCCTAGTACACCAATGATGGGCATAACCACCAAACAACAAGAGCCTAGTAGTACCACTAATTCACTTCTCTCTTTCAATAGTTCAAATTCCCAAGAACAAAAGTATTCTGGTACTTCAATTTCCATCACTCCCATACCAAAACCAAACGCACAAGAATTACTAAACCCTTGCTCAATAAATTTCATGCCCAACCAAGACCAAGACCATAACCCTAATTCAATTTTCATAACCACCTCGATTTCTCAAGATCAAAACCCAGGCCCGTTCCTCAAGTTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:0140110 GO:1900618 GO:1903506 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

254

Amino Acids

28.4

Weight (kDa)

9.14

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68800 AT1G68800
fragaria_vesca	FvH4_4g28170 FvH4_4g28170 FvH4_4g28170
malus_domestica	MD13G1047200.v1.1 MD16G1049000.v1.1
prunus_persica	Prupe.1G304700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0435921
rosa_laevigata	RLG00000006548
rosa_multiflora	Rmu_sc0003165.1_g000002
rosa_roxburghii	Rroxscaffold_5G00377100
rosa_rugosa	Rorug04G0290700
rosa_samantha	Rh4BG353900 Rh4CG368300 Rh4DG347700
rosa_wichuraiana	Rw4G030150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	246
AciI	CCGC	1 cut(s)	421
AclWI	GGATC	4 cut(s)	50, 106, 161, 207
AcsI	RAATTY	4 cut(s)	271, 371, 568, 661
AfaI	GTAC	3 cut(s)	490, 535, 595
AfiI	CCNNNNNNNGG	1 cut(s)	500
AflII	CTTAAG	1 cut(s)	20
AgsI	TTSAA	5 cut(s)	257, 559, 567, 600, 702
AhlI	ACTAGT	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	739
AluBI	AGCT	1 cut(s)	165
AluI	AGCT	1 cut(s)	165
Alw21I	GWGCWC	1 cut(s)	19
AlwI	GGATC	4 cut(s)	50, 106, 161, 207
AoxI	GGCC	2 cut(s)	344, 742
ApeKI	GCWGC	2 cut(s)	165, 469
ApoI	RAATTY	4 cut(s)	271, 371, 568, 661
Asp700I	GAANNNNTTC	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	743
AsuC2I	CCSGG	1 cut(s)	378
AsuHPI	GGTGA	3 cut(s)	38, 380, 410
AxyI	CCTNAGG	1 cut(s)	195
BauI	CACGAG	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	2 cut(s)	152, 456
BccI	CCATC	3 cut(s)	44, 493, 614
BciT130I	CCWGG	1 cut(s)	741
BclI	TGATCA	2 cut(s)	298, 441
BcnI	CCSGG	1 cut(s)	378
BcuI	ACTAGT	1 cut(s)	173
BfaI	CTAG	4 cut(s)	174, 203, 486, 528
BfrI	CTTAAG	1 cut(s)	20
BisI	GCNGC	2 cut(s)	166, 470
BlsI	GCNGC	2 cut(s)	167, 471
Bme1390I	CCNGG	2 cut(s)	378, 741
BmgT120I	GGNCC	1 cut(s)	743
BmrFI	CCNGG	2 cut(s)	378, 741
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	2 cut(s)	341, 396
BmuI	ACTGGG	1 cut(s)	396
BpuEI	CTTGAG	2 cut(s)	711, 737
BpuMI	CCSGG	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	739
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse1I	ACTGG	1 cut(s)	391
Bse21I	CCTNAGG	1 cut(s)	195
Bse3DI	GCAATG	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	741
BseDI	CCNNGG	1 cut(s)	739
BseGI	GGATG	2 cut(s)	187, 364
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMI	GCAATG	1 cut(s)	295
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	391
BseXI	GCAGC	2 cut(s)	152, 456
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	2 cut(s)	346, 744
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	377
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	2 cut(s)	346, 744
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	9 cut(s)	55, 98, 153, 158, 199, 298, 320, 441, 730
Bsp68I	TCGCGA	1 cut(s)	246
BspACI	CCGC	1 cut(s)	421
BspANI	GGCC	2 cut(s)	346, 744
BspCNI	CTCAG	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	246
BspPI	GGATC	4 cut(s)	50, 106, 161, 207
BspQI	GCTCTTC	1 cut(s)	278
BspTI	CTTAAG	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	391
BssECI	CCNNGG	1 cut(s)	739
BssMI	GATC	9 cut(s)	55, 98, 153, 158, 199, 298, 320, 441, 730
BssSI	CACGAG	1 cut(s)	70
Bst2BI	CACGAG	1 cut(s)	70
Bst2UI	CCWGG	1 cut(s)	741
Bst6I	CTCTTC	1 cut(s)	278
BstAFI	CTTAAG	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	2 cut(s)	195, 228
BstF5I	GGATG	2 cut(s)	187, 364
BstFNI	CGCG	1 cut(s)	246
BstKTI	GATC	9 cut(s)	58, 101, 156, 161, 202, 301, 323, 444, 733
BstMBI	GATC	9 cut(s)	55, 98, 153, 158, 199, 298, 320, 441, 730
BstNI	CCWGG	1 cut(s)	741
BstSCI	CCNGG	2 cut(s)	376, 739
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	152, 456
BstX2I	RGATCY	2 cut(s)	55, 199
BstYI	RGATCY	2 cut(s)	55, 199
Bsu36I	CCTNAGG	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	346, 744
BtsCI	GGATG	2 cut(s)	187, 364
BtsIMutI	CAGTG	1 cut(s)	334
BtuMI	TCGCGA	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	743
Csp6I	GTAC	3 cut(s)	489, 534, 594
CviAII	CATG	3 cut(s)	277, 313, 667
CviJI	RGCY	5 cut(s)	165, 346, 398, 526, 744
CviKI_1	RGCY	5 cut(s)	165, 346, 398, 526, 744
CviQI	GTAC	3 cut(s)	489, 534, 594
DdeI	CTNAG	2 cut(s)	195, 228
DpnI	GATC	9 cut(s)	57, 100, 155, 160, 201, 300, 322, 443, 732
DpnII	GATC	9 cut(s)	55, 98, 153, 158, 199, 298, 320, 441, 730
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco81I	CCTNAGG	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	739
FaeI	CATG	3 cut(s)	280, 316, 670
FaiI	YATR	8 cut(s)	82, 278, 314, 506, 617, 668, 690, 710
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	3 cut(s)	276, 312, 666
FbaI	TGATCA	2 cut(s)	298, 441
Fnu4HI	GCNGC	2 cut(s)	166, 470
FokI	GGATG	2 cut(s)	194, 371
Fsp4HI	GCNGC	2 cut(s)	166, 470
FspBI	CTAG	4 cut(s)	174, 203, 486, 528
GluI	GCNGC	2 cut(s)	166, 470
HaeIII	GGCC	2 cut(s)	346, 744
HapII	CCGG	1 cut(s)	377
Hin1II	CATG	3 cut(s)	280, 316, 670
HinfI	GANTC	2 cut(s)	7, 29
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	3 cut(s)	38, 380, 410
Hpy166II	GTNNAC	1 cut(s)	491
Hpy188I	TCNGA	2 cut(s)	60, 158
Hpy188III	TCNNGA	4 cut(s)	179, 245, 336, 728
Hpy8I	GTNNAC	1 cut(s)	491
HpyAV	CCTTC	2 cut(s)	88, 356
HpyCH4IV	ACGT	2 cut(s)	438, 465
HpyCH4V	TGCA	4 cut(s)	4, 332, 409, 472
HpyF3I	CTNAG	2 cut(s)	195, 228
HpySE526I	ACGT	2 cut(s)	438, 465
Hsp92II	CATG	3 cut(s)	280, 316, 670
Ksp22I	TGATCA	2 cut(s)	298, 441
Kzo9I	GATC	9 cut(s)	55, 98, 153, 158, 199, 298, 320, 441, 730
LguI	GCTCTTC	1 cut(s)	278
LpnPI	CCDG	8 cut(s)	164, 328, 372, 390, 441, 576, 726, 753
Lsp1109I	GCAGC	2 cut(s)	152, 456
LweI	GCATC	2 cut(s)	341, 396
MaeI	CTAG	4 cut(s)	174, 203, 486, 528
MaeII	ACGT	2 cut(s)	438, 465
MaeIII	GTNAC	1 cut(s)	458
MalI	GATC	9 cut(s)	57, 100, 155, 160, 201, 300, 322, 443, 732
MboI	GATC	9 cut(s)	55, 98, 153, 158, 199, 298, 320, 441, 730
MboII	GAAGA	4 cut(s)	24, 87, 295, 330
MflI	RGATCY	2 cut(s)	55, 199
MhlI	GDGCHC	1 cut(s)	19
MnlI	CCTC	7 cut(s)	96, 103, 144, 214, 349, 727, 761
MroXI	GAANNNNTTC	1 cut(s)	271
MseI	TTAA	2 cut(s)	21, 759
MspCI	CTTAAG	1 cut(s)	20
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	2 cut(s)	378, 741
MvaI	CCWGG	1 cut(s)	741
MvnI	CGCG	1 cut(s)	246
NciI	CCSGG	1 cut(s)	378
NdeII	GATC	9 cut(s)	55, 98, 153, 158, 199, 298, 320, 441, 730
NlaIII	CATG	3 cut(s)	280, 316, 670
NruI	TCGCGA	1 cut(s)	246
PciSI	GCTCTTC	1 cut(s)	278
PdmI	GAANNNNTTC	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	167, 471
Psp6I	CCWGG	1 cut(s)	739
PspGI	CCWGG	1 cut(s)	739
PspPI	GGNCC	1 cut(s)	743
PsuI	RGATCY	2 cut(s)	55, 199
RruI	TCGCGA	1 cut(s)	246
RsaI	GTAC	3 cut(s)	490, 535, 595
RsaNI	GTAC	3 cut(s)	489, 534, 594
SapI	GCTCTTC	1 cut(s)	278
SaqAI	TTAA	2 cut(s)	21, 759
SatI	GCNGC	2 cut(s)	166, 470
Sau3AI	GATC	9 cut(s)	55, 98, 153, 158, 199, 298, 320, 441, 730
Sau96I	GGNCC	1 cut(s)	743
ScrFI	CCNGG	2 cut(s)	378, 741
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	6 cut(s)	167, 265, 441, 460, 468, 719
SfaNI	GCATC	2 cut(s)	341, 396
SmlI	CTYRAG	3 cut(s)	20, 726, 752
SmoI	CTYRAG	3 cut(s)	20, 726, 752
SpeI	ACTAGT	1 cut(s)	173
SsiI	CCGC	1 cut(s)	421
SspMI	CTAG	4 cut(s)	174, 203, 486, 528
StyD4I	CCNGG	2 cut(s)	376, 739
TaiI	ACGT	2 cut(s)	441, 468
TaqI	TCGA	3 cut(s)	101, 335, 719
TatI	WGTACW	1 cut(s)	488
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	2 cut(s)	21, 759
Tru9I	TTAA	2 cut(s)	21, 759
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	2 cut(s)	165, 469
TspDTI	ATGAA	6 cut(s)	62, 198, 296, 375, 655, 697
TspRI	CASTG	1 cut(s)	334
Vha464I	CTTAAG	1 cut(s)	20
XapI	RAATTY	4 cut(s)	271, 371, 568, 661
XmnI	GAANNNNTTC	1 cut(s)	271
XspI	CTAG	4 cut(s)	174, 203, 486, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.