MD13G1047200.v1.1
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0014202
Physical Location & Seq
Forward (+)
3317170 .. 3318603
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1047200.v1.1.491

Sequence Viewer

Length: 1434 bp
ATGTTTCCTTCTAGCAGCACCACTAGTAATACCCAGCTACCTTTTCTATGTGATGACAACCACACAAATGGTATTATTGATGATTTTCATCAAAACCCTAATTCAATATCATCACATGGTGGCTATCATCAATACTATTCACAGTACTACTACTCCGATGACCAGCAGCAGCAGCAGGCACCTGATTTTCTTGAACACGATGGAATGCTATTGAGCTACTTGCTATCTCAGCAGCAGCTCTTGATCGACAGCTCCAGTACTACTAATGTAGCAACGCATTCCAACCATACTCGAGCTCACAGTAGCGCTGAAATATGCATTGTGGATTCAAATTCAAACAAAACAATGGAGTTGATCAACCGTGCCGACGAGATCACCGTTATCCCGGCTGCAGATTCACAGATTAAGAAAAATAATGTGAAGATGAATGGAGAAGGAGGTGGAGAGAAAAAGGCAAAATTTGCTCGAAAGAGAGCGAGTGGGAAAAAAGACAGACACAGCAAGATCTACACAGCTCAAGGTCCAAGAGACCGGAGAATGAGGCTGTCCCTCCAAATTGCCCGGAAGTTCTTTGATCTTCAAGACATGTTGGGGTTTGACAAAGCCAGCAAAACAATTGAGTGGCTTTTCACAAAGTCAAAGACCGCCATCAAGGACCTCAAGCAGCACCTCCTCGTCTCACCCAAGGAGGATTACAGCAGCACAAATGGCGGTGCAACTGCAAAGGTGAATTCATTTGAGAGTACCACCGGTGATGTCGCATCGAAAATTATGGAGCCAAATAGTAGTGCTGCAAAAGGTGACATTTCCATTGGGTTGGCTAGGGAGAAAAAGTACAGGAAGTTATCAGTGGTTGCAAGGGAATCGAGGGTGGAGGCAAGAGCAAGGGCAAGAGAGAGAACAAGGGAGAAGATGATGAGGATCAGAGGGTTTGATCAAGATCATCAGAGTACAAAGCAAAGCCATAAGCATCAAGAACAACAAAACCCTAATGAATTGTTTGAAACAGCTGGAATGATGAATTCCATGATGATGAGCATGAATCGTCCCAACGATGGTCAGAAAATTGTGGGCAGAACAAGTAGTAATTGTGGTGGTGCAGAAAGATTGTTTTTGAATTTTGATTTTTCGCGACATGCGGAGGCAAGTGGAGCAAATTCTGAGGACTGTGATTTTCCAGGGAATTGGGGAGCAATCAACAACACCAAGAATATTATTACAGGTAACGTGCTGCAAGTAGAGCAAAACCCTACCTCATACCCAAAACAACAGAACCCTAGCTCAATTTTCGGGACCGGTACTCAAGAGCAAAACCCTAATTCAATTTTCCTCACCACCTTAGCCAAAGCTCAAGACCAAAACTCCACTACCTCTTCAAATTTTGCGATCAATACAAATATTAGTACTTTGCAGCCCCTGTTTACTGGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

478

Amino Acids

53.2

Weight (kDa)

8.91

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 161 - 306 8.7e-44 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68800 AT1G68800
fragaria_vesca FvH4_4g28170 FvH4_4g28170 FvH4_4g28170
malus_domestica MD13G1047200.v1.1 MD16G1049000.v1.1
prunus_persica Prupe.1G304700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0435921
rosa_laevigata RLG00000006548
rosa_multiflora Rmu_sc0003165.1_g000002
rosa_roxburghii Rroxscaffold_5G00377100
rosa_rugosa Rorug04G0290700
rosa_samantha Rh4BG353900 Rh4CG368300 Rh4DG347700
rosa_wichuraiana Rw4G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 178
AccII CGCG 1 cut(s) 1132
AciI CCGC 3 cut(s) 645, 711, 1139
AclWI GGATC 1 cut(s) 929
AcsI RAATTY 7 cut(s) 331, 458, 730, 1021, 1117, 1156, 1378
AdeI CACNNNGTG 1 cut(s) 119
AfaI GTAC 7 cut(s) 146, 259, 745, 836, 952, 1300, 1405
AfeI AGCGCT 1 cut(s) 307
AfiI CCNNNNNNNGG 1 cut(s) 1055
AflIII ACRYGT 1 cut(s) 585
AgeI ACCGGT 2 cut(s) 749, 1295
AgsI TTSAA 9 cut(s) 105, 194, 330, 336, 581, 1004, 1117, 1323, 1377
AhlI ACTAGT 1 cut(s) 23
AjnI CCWGG 1 cut(s) 1177
AluBI AGCT 9 cut(s) 37, 216, 238, 252, 296, 515, 1010, 1281, 1349
AluI AGCT 9 cut(s) 37, 216, 238, 252, 296, 515, 1010, 1281, 1349
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 2 cut(s) 522, 682
AlwI GGATC 1 cut(s) 929
AlwNI CAGNNNCTG 1 cut(s) 1417
Ama87I CYCGRG 1 cut(s) 291
Aor51HI AGCGCT 1 cut(s) 307
ApoI RAATTY 7 cut(s) 331, 458, 730, 1021, 1117, 1156, 1378
AsiGI ACCGGT 2 cut(s) 749, 1295
AspLEI GCGC 1 cut(s) 308
AspS9I GGNCC 3 cut(s) 521, 655, 1293
AsuC2I CCSGG 2 cut(s) 386, 562
AsuHPI GGTGA 6 cut(s) 367, 672, 739, 764, 812, 1324
AvaI CYCGRG 1 cut(s) 291
AvaII GGWCC 3 cut(s) 521, 655, 1293
BanI GGYRCC 1 cut(s) 178
BanII GRGCYC 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 298
BccI CCATC 3 cut(s) 194, 656, 1049
BcgI CGANNNNNNTGC 2 cut(s) 846, 880
BciT130I CCWGG 1 cut(s) 1179
BclI TGATCA 2 cut(s) 354, 934
BcnI CCSGG 2 cut(s) 386, 562
BcoDI GTCTC 2 cut(s) 522, 682
BcuI ACTAGT 1 cut(s) 23
BfaI CTAG 4 cut(s) 12, 24, 822, 1278
BfmI CTRYAG 1 cut(s) 390
BfoI RGCGCY 1 cut(s) 309
BglII AGATCT 1 cut(s) 504
BmcAI AGTACT 3 cut(s) 146, 259, 1405
Bme1390I CCNGG 3 cut(s) 386, 562, 1179
Bme18I GGWCC 3 cut(s) 521, 655, 1293
BmeT110I CYCGRG 1 cut(s) 291
BmgT120I GGNCC 3 cut(s) 521, 655, 1293
BmiI GGNNCC 3 cut(s) 180, 777, 1294
BmrFI CCNGG 3 cut(s) 386, 562, 1179
BmsI GCATC 2 cut(s) 770, 979
BpmI CTGGAG 1 cut(s) 238
Bpu10I CCTNAGC 1 cut(s) 1339
BpuEI CTTGAG 4 cut(s) 501, 644, 1287, 1335
BpuMI CCSGG 2 cut(s) 386, 562
BsaBI GATNNNNATC 3 cut(s) 87, 920, 939
BsaI GGTCTC 1 cut(s) 522
BsaJI CCNNGG 2 cut(s) 684, 1178
BsaWI WCCGGW 3 cut(s) 531, 749, 1295
BsaXI ACNNNNNCTCC 6 cut(s) 137, 167, 818, 848, 1346, 1376
Bsc4I CCNNNNNNNGG 1 cut(s) 1055
Bse118I RCCGGY 2 cut(s) 749, 1295
Bse1I ACTGG 2 cut(s) 255, 1429
Bse8I GATNNNNATC 3 cut(s) 87, 920, 939
BseBI CCWGG 1 cut(s) 1179
BseDI CCNNGG 2 cut(s) 684, 1178
BseJI GATNNNNATC 3 cut(s) 87, 920, 939
BseLI CCNNNNNNNGG 1 cut(s) 1055
BseMII CTCAG 2 cut(s) 242, 1152
BseNI ACTGG 2 cut(s) 255, 1429
BseRI GAGGAG 1 cut(s) 662
BseYI CCCAGC 1 cut(s) 33
BsgI GTGCAG 1 cut(s) 1119
Bsh1236I CGCG 1 cut(s) 1132
BshNI GGYRCC 1 cut(s) 178
BshTI ACCGGT 2 cut(s) 749, 1295
BsiHKAI GWGCWC 1 cut(s) 298
BsiHKCI CYCGRG 1 cut(s) 291
BsiSI CCGG 5 cut(s) 386, 532, 562, 750, 1296
BslFI GGGAC 3 cut(s) 532, 1032, 1306
BslI CCNNNNNNNGG 1 cut(s) 1055
BsmAI GTCTC 2 cut(s) 522, 682
BsmBI CGTCTC 1 cut(s) 682
BsmFI GGGAC 3 cut(s) 532, 1032, 1306
BsmI GAATGC 2 cut(s) 210, 277
Bso31I GGTCTC 1 cut(s) 522
BsoBI CYCGRG 1 cut(s) 291
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 9 cut(s) 243, 354, 372, 504, 574, 921, 934, 940, 1386
Bsp68I TCGCGA 1 cut(s) 1132
BspACI CCGC 3 cut(s) 645, 711, 1139
BspCNI CTCAG 2 cut(s) 241, 1153
BspFNI CGCG 1 cut(s) 1132
BspLI GGNNCC 3 cut(s) 180, 777, 1294
BspMAI CTGCAG 1 cut(s) 394
BspPI GGATC 1 cut(s) 929
BspT107I GGYRCC 1 cut(s) 178
BspTNI GGTCTC 1 cut(s) 522
BsrFI RCCGGY 2 cut(s) 749, 1295
BsrI ACTGG 2 cut(s) 255, 1429
BssAI RCCGGY 2 cut(s) 749, 1295
BssECI CCNNGG 2 cut(s) 684, 1178
BssMI GATC 9 cut(s) 243, 354, 372, 504, 574, 921, 934, 940, 1386
BssT1I CCWWGG 1 cut(s) 684
Bst2UI CCWGG 1 cut(s) 1179
Bst4CI ACNGT 5 cut(s) 144, 302, 362, 379, 1169
Bst6I CTCTTC 1 cut(s) 1378
BstAPI GCANNNNNTGC 1 cut(s) 461
BstC8I GCNNGC 2 cut(s) 177, 607
BstDEI CTNAG 3 cut(s) 228, 1161, 1339
BstFNI CGCG 1 cut(s) 1132
BstH2I RGCGCY 1 cut(s) 309
BstHHI GCGC 1 cut(s) 308
BstKTI GATC 9 cut(s) 246, 357, 375, 507, 577, 924, 937, 943, 1389
BstMAI GTCTC 2 cut(s) 522, 682
BstMBI GATC 9 cut(s) 243, 354, 372, 504, 574, 921, 934, 940, 1386
BstMWI GCNNNNNNNGC 6 cut(s) 172, 229, 461, 708, 1151, 1240
BstNI CCWGG 1 cut(s) 1179
BstNSI RCATGY 2 cut(s) 589, 1139
BstSCI CCNGG 3 cut(s) 384, 560, 1177
BstSFI CTRYAG 1 cut(s) 390
BstUI CGCG 1 cut(s) 1132
BstX2I RGATCY 1 cut(s) 504
BstXI CCANNNNNNTGG 3 cut(s) 68, 817, 1185
BstYI RGATCY 1 cut(s) 504
BtsIMutI CAGTG 1 cut(s) 855
BtuMI TCGCGA 1 cut(s) 1132
Cac8I GCNNGC 2 cut(s) 177, 607
CaiI CAGNNNCTG 1 cut(s) 1417
CfoI GCGC 1 cut(s) 308
Cfr10I RCCGGY 2 cut(s) 749, 1295
Cfr13I GGNCC 3 cut(s) 521, 655, 1293
Csp6I GTAC 7 cut(s) 145, 258, 744, 835, 951, 1299, 1404
CspAI ACCGGT 2 cut(s) 749, 1295
CviAII CATG 5 cut(s) 116, 586, 1027, 1039, 1136
CviQI GTAC 7 cut(s) 145, 258, 744, 835, 951, 1299, 1404
DdeI CTNAG 3 cut(s) 228, 1161, 1339
DpnI GATC 9 cut(s) 245, 356, 374, 506, 576, 923, 936, 942, 1388
DpnII GATC 9 cut(s) 243, 354, 372, 504, 574, 921, 934, 940, 1386
DraIII CACNNNGTG 1 cut(s) 119
Eam1104I CTCTTC 1 cut(s) 1378
EarI CTCTTC 1 cut(s) 1378
Ecl136II GAGCTC 1 cut(s) 296
Eco130I CCWWGG 1 cut(s) 684
Eco24I GRGCYC 1 cut(s) 298
Eco31I GGTCTC 1 cut(s) 522
Eco47I GGWCC 3 cut(s) 521, 655, 1293
Eco47III AGCGCT 1 cut(s) 307
Eco53kI GAGCTC 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 291
EcoICRI GAGCTC 1 cut(s) 296
EcoO109I RGGNCCY 1 cut(s) 655
EcoRI GAATTC 2 cut(s) 730, 1021
EcoRII CCWGG 1 cut(s) 1177
EcoT14I CCWWGG 1 cut(s) 684
EcoT22I ATGCAT 1 cut(s) 320
EcoT38I GRGCYC 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 684
Esp3I CGTCTC 1 cut(s) 682
FaeI CATG 5 cut(s) 119, 589, 1030, 1042, 1139
FaqI GGGAC 3 cut(s) 532, 1032, 1306
FatI CATG 5 cut(s) 115, 585, 1026, 1038, 1135
FbaI TGATCA 2 cut(s) 354, 934
FriOI GRGCYC 1 cut(s) 298
FspBI CTAG 4 cut(s) 12, 24, 822, 1278
GlaI GCGC 1 cut(s) 307
GsaI CCCAGC 1 cut(s) 37
GsuI CTGGAG 1 cut(s) 238
HaeII RGCGCY 1 cut(s) 309
HapII CCGG 5 cut(s) 386, 532, 562, 750, 1296
HhaI GCGC 1 cut(s) 308
Hin1II CATG 5 cut(s) 119, 589, 1030, 1042, 1139
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HinfI GANTC 4 cut(s) 326, 395, 863, 1042
HpaII CCGG 5 cut(s) 386, 532, 562, 750, 1296
HphI GGTGA 6 cut(s) 367, 672, 739, 764, 812, 1324
Hpy166II GTNNAC 1 cut(s) 1422
Hpy188I TCNGA 5 cut(s) 157, 926, 948, 1062, 1162
Hpy188III TCNNGA 9 cut(s) 191, 241, 581, 938, 974, 1131, 1291, 1304, 1352
Hpy8I GTNNAC 1 cut(s) 1422
Hpy99I CGWCG 1 cut(s) 371
HpyAV CCTTC 2 cut(s) 18, 428
HpyCH4III ACNGT 5 cut(s) 144, 302, 362, 379, 1169
HpyCH4IV ACGT 1 cut(s) 1227
HpyCH4V TGCA 9 cut(s) 318, 392, 716, 722, 794, 857, 1100, 1234, 1411
HpyF10VI GCNNNNNNNGC 6 cut(s) 172, 229, 461, 708, 1151, 1240
HpyF3I CTNAG 3 cut(s) 228, 1161, 1339
HpySE526I ACGT 1 cut(s) 1227
Hsp92II CATG 5 cut(s) 119, 589, 1030, 1042, 1139
HspAI GCGC 1 cut(s) 306
Ksp22I TGATCA 2 cut(s) 354, 934
Kzo9I GATC 9 cut(s) 243, 354, 372, 504, 574, 921, 934, 940, 1386
LmnI GCTCC 4 cut(s) 257, 775, 1151, 1190
LweI GCATC 2 cut(s) 770, 979
MaeI CTAG 4 cut(s) 12, 24, 822, 1278
MaeII ACGT 1 cut(s) 1227
MaeIII GTNAC 2 cut(s) 800, 1223
MalI GATC 9 cut(s) 245, 356, 374, 506, 576, 923, 936, 942, 1388
MboI GATC 9 cut(s) 243, 354, 372, 504, 574, 921, 934, 940, 1386
MboII GAAGA 4 cut(s) 433, 569, 922, 1365
MfeI CAATTG 1 cut(s) 615
MflI RGATCY 1 cut(s) 504
MhlI GDGCHC 1 cut(s) 298
MmeI TCCRAC 1 cut(s) 306
Mph1103I ATGCAT 1 cut(s) 320
MseI TTAA 2 cut(s) 405, 1432
MslI CAYNNNNRTG 2 cut(s) 66, 1031
MspA1I CMGCKG 1 cut(s) 1010
MspI CCGG 5 cut(s) 386, 532, 562, 750, 1296
MspR9I CCNGG 3 cut(s) 386, 562, 1179
MunI CAATTG 1 cut(s) 615
Mva1269I GAATGC 2 cut(s) 210, 277
MvaI CCWGG 1 cut(s) 1179
MvnI CGCG 1 cut(s) 1132
MwoI GCNNNNNNNGC 6 cut(s) 172, 229, 461, 708, 1151, 1240
NciI CCSGG 2 cut(s) 386, 562
NdeII GATC 9 cut(s) 243, 354, 372, 504, 574, 921, 934, 940, 1386
NlaIII CATG 5 cut(s) 119, 589, 1030, 1042, 1139
NlaIV GGNNCC 3 cut(s) 180, 777, 1294
NmuCI GTSAC 1 cut(s) 800
NruI TCGCGA 1 cut(s) 1132
NsiI ATGCAT 1 cut(s) 320
NspI RCATGY 2 cut(s) 589, 1139
PaeR7I CTCGAG 1 cut(s) 291
PciI ACATGT 1 cut(s) 585
PcsI WCGNNNNNNNCGW 1 cut(s) 375
PctI GAATGC 2 cut(s) 210, 277
PfeI GAWTC 4 cut(s) 326, 395, 863, 1042
PinAI ACCGGT 2 cut(s) 749, 1295
PpuMI RGGWCCY 1 cut(s) 655
PscI ACATGT 1 cut(s) 585
Psp124BI GAGCTC 1 cut(s) 298
Psp5II RGGWCCY 1 cut(s) 655
Psp6I CCWGG 1 cut(s) 1177
PspFI CCCAGC 1 cut(s) 33
PspGI CCWGG 1 cut(s) 1177
PspN4I GGNNCC 3 cut(s) 180, 777, 1294
PspPI GGNCC 3 cut(s) 521, 655, 1293
PspPPI RGGWCCY 1 cut(s) 655
PspXI VCTCGAGB 1 cut(s) 291
PstI CTGCAG 1 cut(s) 394
PstNI CAGNNNCTG 1 cut(s) 1417
PsuI RGATCY 1 cut(s) 504
PvuII CAGCTG 1 cut(s) 1010
RruI TCGCGA 1 cut(s) 1132
RsaI GTAC 7 cut(s) 146, 259, 745, 836, 952, 1300, 1405
RsaNI GTAC 7 cut(s) 145, 258, 744, 835, 951, 1299, 1404
RseI CAYNNNNRTG 2 cut(s) 66, 1031
SacI GAGCTC 1 cut(s) 298
SaqAI TTAA 2 cut(s) 405, 1432
Sau3AI GATC 9 cut(s) 243, 354, 372, 504, 574, 921, 934, 940, 1386
Sau96I GGNCC 3 cut(s) 521, 655, 1293
ScaI AGTACT 3 cut(s) 146, 259, 1405
ScrFI CCNGG 3 cut(s) 386, 562, 1179
SduI GDGCHC 1 cut(s) 298
SfaNI GCATC 2 cut(s) 770, 979
SfcI CTRYAG 1 cut(s) 390
Sfr274I CTCGAG 1 cut(s) 291
SgrAI CRCCGGYG 1 cut(s) 749
SinI GGWCC 3 cut(s) 521, 655, 1293
SlaI CTCGAG 1 cut(s) 291
SmiMI CAYNNNNRTG 2 cut(s) 66, 1031
SmlI CTYRAG 5 cut(s) 291, 516, 659, 1302, 1350
SmoI CTYRAG 5 cut(s) 291, 516, 659, 1302, 1350
SpeI ACTAGT 1 cut(s) 23
SsiI CCGC 3 cut(s) 645, 711, 1139
SspI AATATT 2 cut(s) 1213, 1399
SspMI CTAG 4 cut(s) 12, 24, 822, 1278
SstI GAGCTC 1 cut(s) 298
StyD4I CCNGG 3 cut(s) 384, 560, 1177
StyI CCWWGG 1 cut(s) 684
TaaI ACNGT 5 cut(s) 144, 302, 362, 379, 1169
TaiI ACGT 1 cut(s) 1230
TaqI TCGA 5 cut(s) 246, 292, 466, 764, 866
TatI WGTACW 5 cut(s) 144, 257, 834, 950, 1403
TfiI GAWTC 4 cut(s) 326, 395, 863, 1042
Tru1I TTAA 2 cut(s) 405, 1432
Tru9I TTAA 2 cut(s) 405, 1432
TscAI CASTG 1 cut(s) 855
TseFI GTSAC 1 cut(s) 800
Tsp45I GTSAC 1 cut(s) 800
TspDTI ATGAA 6 cut(s) 77, 440, 723, 1008, 1034, 1055
TspRI CASTG 1 cut(s) 855
VpaK11BI GGWCC 3 cut(s) 521, 655, 1293
XapI RAATTY 7 cut(s) 331, 458, 730, 1021, 1117, 1156, 1378
XceI RCATGY 2 cut(s) 589, 1139
XhoI CTCGAG 1 cut(s) 291
XspI CTAG 4 cut(s) 12, 24, 822, 1278
ZrmI AGTACT 3 cut(s) 146, 259, 1405
Zsp2I ATGCAT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.