AT1G69070

Nop14-like family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
25967312 .. 25971542
4231 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G69070.1

Sequence Viewer

Length: 2706 bp
ATGGGGAAAGATAACAAAATGAAGAAGAAGCCTAACAAAAAAGGCGAAAGAAGAATGGGTCCAGATGCAGTGGCCATGAAAGCTAAAACGCAGAAGGTCGATAATCCATTTGAATCAATCCGATCTCGCCGGAAGTTCGATATCCTCGGAAAAAAGCGTAAAGGTGAAGAACGATTCGTCAGTGTTTCTCGAACTCGTGCTGTTGATAAGAGGAAGAACACGCTGGAGAAAGAGTATGAGCAGAGTTTAAAATCTTCGGTGTTCCTTGATAAGCGTATTGGAGAACAGAACGATGAGCTTGGTGAATTCGATAAGGGTATAATTAGATCGCAGAGACAGCGTCAGTTGAAACTAGCGAAGAAGAGTATGTATAATTTGTCTGATGGTGAAGAAGATGTTTATGAAGATGGTGCTCTTGGTGGTTCTTCTGTAAAGGATGATTTTGATTCTGGACTTTTGTCTGATGAAGATCTTCAAGATGATGATTTAGAAGCTTCTGCATCAAAGAGACTGAAGCATCTAAACAGAAACAGAGAGGTTGATGCATCTGGAGAGGAAGAGAGGCGTAAGAGTAAGAAGGAAGTCATGGAAGAGATCATCATGAAGAGCAAACTTGGTAGGATGGAGAAAGCTAAGCAAAAGGAGGAAAAGGGAAAGCTAATGGATGAGCTTGATAAAAACTTCAAGTCCTTAGTGAATTCTGAGGCGATGGAGAGTTTAACTAAGCCTTTTGTAGCCGAAGAGAATACACGCGATCCTTATCTACTAAGTCTGAATGATATGTCAATGGAAATCCGTGCTCGTCCTTCTGAGAGGACAAAGACACCTGAAGAAATTGCCCAGAAAGAGCGAGAAAAGTTAGAGGCTCTTGAGGAAGAGCGTAAGAAAAGGATGCAGGAAACTGAGGAGTTAAGTGATGGGGATGAGGAAATTGGCGGTGAGGAGTCTACAAAGAGGCTAACTGTCATTTCTGGTGACGATCTTGGTGATTCCTTCTCAGTTGAAGAAGATAAGCCGAAAAGGGGATGGATTGATGATGTTCTTGAAAGAGAGGATAATGTTGATAATTCAGAAAGTGACGAGGATGAGGATTCAGAAAGTGAAGAAGAAGAAGATGATGATGGTGAGTCAGATGGAGGTGATGAGAAGCAGAGAAAAGGTCATCATTTAGAAGACTGGGAACAAAGTGATGATGAGCTAGGGGCTGAGCTGGAAGATGAGGAAGAGGATGATGATGAAGAAGATGATGATGAAGAGGATGCTGAGCTAAGGGTACATAAAAAGTTGAAGAATGACTATGCTGCTCCATATAAAGGAGAAGGGTTGTCGGGAACAGTGAAAGAAAAAACCAATATGAAGAAAATGAGTTCAACGCAGCGTGATATTCCCTTCATGATTGATCCTCCAAAGAATTTCGAGGAATTACTTGCCCTAGTGGAAGATTGTTCAAATGAAGATGTTATTCTAATTGTCAACCGAATCCGGATAGCACACTCAATTAAGATTAAAGCTGAAAACCGAAAAAAGATGCAGGTCTTCTATGGTGTTCTCTTGCAGTATTTTGCCGTTCTTGCAAGCAAAAAGCCCTTGAACTTTGATTTACTAAATATGCTTGTCAAACCTTTGATTGAGATGAGCATGGAGATCCCCTACTTTGCTGCAATATGTGCTCGCCAGCGGCTTTTAAAGACCCGTTCACAATTTTGCGAGGCTATCAAGAATCCAGAGGATGGATGCTGGCCTTCCTTGAAAACATTATTTCTCTTGCGGCTCTGGTCCCTGATTTTTCCATGCTCTGACTTTCGCCATGCTGTGATGACCCCATCGATTTTGTTGATGTGTGAATATCTCATGCGCTGTCCCATCTCTTCTGGTCGTGATATTGCCATAGGTTCCTTTTTATGCTCCATTGTTCTCTTGCAATCTAAAAAGTTCTGTCCTGAAGCCATATTATTTATTCGGACTCTCCTGATGGCTGCTTCAGACAAAAAGTCACCAGCATCTGCGGAATCTGAGTTTTATCATTTTATGGAATTAAAATCGTTGACTCCATTGCTGTGCATACAAGACAACGTAAAGGAGGTCATGCCTTTAAACTTCCTAAAGATAATGAATGAGCCAGCAGACTCTCCATATTTCAGCTCTGATGATTTCAGAGCAAGCATCCTTTCAAGTGTAGTCGAGACTCTTGAAGGGTTTGTGGAGATAAATGGAGGATTGAGTTCCTTTCCAGAGATCTTCATGCCCATCTCAACTTTATTGCACCAAATTGGAAACCAAGAAAAGATCCCACAAACTCTCAAGGAGAAATTAGAAGATGTTGCAAAGCTAATCGAAAAGAAAACCGACGACCATCACAAGGAACGCAAACCACTCTCTATGCGTAAGCATAAGCCAGTAGCCATCAGAATGGTCAATCCCAAATTTGAAGAGAACTTTGTTCCAGGCATGGATAACGATCCAGACAAATACCGTTCTGACCTCAAAAAATTGAAGAGAAAGTTAAAACGGGAAGCCAGAGGAGCAGTTCGTGAGCTGCGCAAAGACAGCTACTTCATGAGCACTGTTAAAGCAAAAGAGAAGGCTGCGCATGAGCAAGAGAGAGCAGAGAAACATGGCAAAGCTTGGGCTTTCCTTCAAGAACAAGAACATGCTTTCAAATCTGGACAACTTGGTAAAGGCAAAGGCAAGAAGAGAAGACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

901

Amino Acids

103.64

Weight (kDa)

5.41

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nop14 PF04147 28 - 884 7.3e-231 Nop14-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011043)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 2540, 2589
Acc36I ACCTGC 1 cut(s) 1522
AccB7I CCANNNNNTGG 1 cut(s) 1730
AccI GTMKAC 1 cut(s) 947
AccII CGCG 1 cut(s) 753
AccIII TCCGGA 1 cut(s) 1482
AciI CCGC 4 cut(s) 936, 1678, 1768, 2006
AclWI GGATC 5 cut(s) 749, 1394, 1639, 2281, 2453
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 4 cut(s) 305, 697, 1411, 2423
AcuI CTGAAG 4 cut(s) 533, 849, 1962, 1965
AfaI GTAC 1 cut(s) 1275
AfiI CCNNNNNNNGG 4 cut(s) 1022, 1313, 1730, 2359
AhdI GACNNNNNGTC 1 cut(s) 1990
AjnI CCWGG 1 cut(s) 2443
Alw21I GWGCWC 4 cut(s) 415, 802, 1672, 2564
Alw26I GTCTC 3 cut(s) 328, 502, 2177
AlwI GGATC 5 cut(s) 749, 1394, 1639, 2281, 2453
AlwNI CAGNNNCTG 1 cut(s) 2003
Aor13HI TCCGGA 1 cut(s) 1482
AoxI GGCC 2 cut(s) 72, 1739
ApeKI GCWGC 6 cut(s) 1301, 1375, 1658, 1976, 2536, 2585
ApoI RAATTY 4 cut(s) 305, 697, 1411, 2423
Asp700I GAANNNNTTC 1 cut(s) 471
AspLEI GCGC 3 cut(s) 1857, 2541, 2590
AspS9I GGNCC 2 cut(s) 59, 1776
AsuHPI GGTGA 9 cut(s) 176, 314, 398, 950, 986, 998, 1136, 1151, 1986
AvaII GGWCC 2 cut(s) 59, 1776
BalI TGGCCA 1 cut(s) 74
BauI CACGAG 1 cut(s) 195
BbsI GAAGAC 2 cut(s) 1179, 1528
Bbv12I GWGCWC 4 cut(s) 415, 802, 1672, 2564
BbvI GCAGC 6 cut(s) 1288, 1387, 1645, 1963, 2523, 2572
BceAI ACGGC 1 cut(s) 1550
BciT130I CCWGG 1 cut(s) 2445
BcoDI GTCTC 3 cut(s) 328, 502, 2177
BfaI CTAG 3 cut(s) 353, 1199, 1433
BfuAI ACCTGC 1 cut(s) 1522
BglII AGATCT 2 cut(s) 469, 2235
BisI GCNGC 8 cut(s) 1302, 1376, 1659, 1679, 1769, 1977, 2537, 2586
BlpI GCTNAGC 3 cut(s) 633, 1206, 1263
BlsI GCNGC 8 cut(s) 1303, 1377, 1660, 1680, 1770, 1978, 2538, 2587
Bme1390I CCNGG 1 cut(s) 2445
Bme18I GGWCC 2 cut(s) 59, 1776
BmeRI GACNNNNNGTC 1 cut(s) 1990
BmgT120I GGNCC 2 cut(s) 59, 1776
BmiI GGNNCC 3 cut(s) 60, 1778, 1894
BmrFI CCNGG 1 cut(s) 2445
BmrI ACTGGG 1 cut(s) 1186
BmuI ACTGGG 1 cut(s) 1186
BoxI GACNNNNGTC 1 cut(s) 457
BpiI GAAGAC 2 cut(s) 1179, 1528
BpmI CTGGAG 2 cut(s) 245, 570
Bpu10I CCTNAGC 1 cut(s) 1268
Bpu1102I GCTNAGC 3 cut(s) 633, 1206, 1263
BpuEI CTTGAG 2 cut(s) 890, 2285
Bsa29I ATCGAT 1 cut(s) 1826
BsaBI GATNNNNATC 3 cut(s) 468, 759, 2457
BsaJI CCNNGG 1 cut(s) 145
BsaWI WCCGGW 1 cut(s) 1482
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 4 cut(s) 1022, 1313, 1730, 2359
Bse1I ACTGG 2 cut(s) 1181, 2396
Bse3DI GCAATG 1 cut(s) 2051
Bse8I GATNNNNATC 3 cut(s) 468, 759, 2457
BseAI TCCGGA 1 cut(s) 1482
BseBI CCWGG 1 cut(s) 2445
BseCI ATCGAT 1 cut(s) 1826
BseDI CCNNGG 1 cut(s) 145
BseJI GATNNNNATC 3 cut(s) 468, 759, 2457
BseLI CCNNNNNNNGG 4 cut(s) 1022, 1313, 1730, 2359
BseMI GCAATG 1 cut(s) 2051
BseMII CTCAG 7 cut(s) 693, 801, 894, 1011, 1197, 1254, 2004
BseNI ACTGG 2 cut(s) 1181, 2396
BseRI GAGGAG 3 cut(s) 920, 956, 2535
BseXI GCAGC 6 cut(s) 1288, 1387, 1645, 1963, 2523, 2572
Bsh1236I CGCG 1 cut(s) 753
BshFI GGCC 2 cut(s) 74, 1741
BshVI ATCGAT 1 cut(s) 1826
BsiHKAI GWGCWC 4 cut(s) 415, 802, 1672, 2564
BsiSI CCGG 2 cut(s) 130, 1483
BslFI GGGAC 2 cut(s) 1762, 1845
BslI CCNNNNNNNGG 4 cut(s) 1022, 1313, 1730, 2359
BsmAI GTCTC 3 cut(s) 328, 502, 2177
BsmFI GGGAC 2 cut(s) 1762, 1845
BsnI GGCC 2 cut(s) 74, 1741
Bsp1286I GDGCHC 4 cut(s) 415, 802, 1672, 2564
Bsp13I TCCGGA 1 cut(s) 1482
Bsp1720I GCTNAGC 3 cut(s) 633, 1206, 1263
BspACI CCGC 4 cut(s) 936, 1678, 1768, 2006
BspANI GGCC 2 cut(s) 74, 1741
BspCNI CTCAG 7 cut(s) 694, 802, 895, 1010, 1198, 1255, 2005
BspDI ATCGAT 1 cut(s) 1826
BspEI TCCGGA 1 cut(s) 1482
BspFNI CGCG 1 cut(s) 753
BspHI TCATGA 3 cut(s) 600, 1392, 2556
BspLI GGNNCC 3 cut(s) 60, 1778, 1894
BspMI ACCTGC 1 cut(s) 1522
BspPI GGATC 5 cut(s) 749, 1394, 1639, 2281, 2453
BspQI GCTCTTC 2 cut(s) 599, 870
BsrDI GCAATG 1 cut(s) 2051
BsrI ACTGG 2 cut(s) 1181, 2396
BssECI CCNNGG 1 cut(s) 145
BssSI CACGAG 1 cut(s) 195
Bst2BI CACGAG 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 2445
Bst4CI ACNGT 4 cut(s) 964, 1336, 2474, 2566
BstAPI GCANNNNNTGC 1 cut(s) 1667
BstC8I GCNNGC 6 cut(s) 1576, 1672, 1676, 1739, 2121, 2161
BstFNI CGCG 1 cut(s) 753
BstHHI GCGC 3 cut(s) 1857, 2541, 2590
BstMAI GTCTC 3 cut(s) 328, 502, 2177
BstMWI GCNNNNNNNGC 6 cut(s) 80, 337, 1571, 1667, 2522, 2547
BstNI CCWGG 1 cut(s) 2445
BstNSI RCATGY 1 cut(s) 2654
BstPAI GACNNNNGTC 1 cut(s) 457
BstSCI CCNGG 1 cut(s) 2443
BstUI CGCG 1 cut(s) 753
BstV1I GCAGC 6 cut(s) 1288, 1387, 1645, 1963, 2523, 2572
BstV2I GAAGAC 2 cut(s) 1179, 1528
BstX2I RGATCY 4 cut(s) 469, 1644, 2235, 2286
BstXI CCANNNNNNTGG 1 cut(s) 2410
BstYI RGATCY 4 cut(s) 469, 1644, 2235, 2286
Bsu15I ATCGAT 1 cut(s) 1826
BsuRI GGCC 2 cut(s) 74, 1741
BsuTUI ATCGAT 1 cut(s) 1826
BtgZI GCGATG 1 cut(s) 722
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 4 cut(s) 75, 187, 1341, 2562
BveI ACCTGC 1 cut(s) 1522
Cac8I GCNNGC 6 cut(s) 1576, 1672, 1676, 1739, 2121, 2161
CaiI CAGNNNCTG 1 cut(s) 2003
CciI TCATGA 3 cut(s) 600, 1392, 2556
CfoI GCGC 3 cut(s) 1857, 2541, 2590
Cfr13I GGNCC 2 cut(s) 59, 1776
ClaI ATCGAT 1 cut(s) 1826
CseI GACGC 1 cut(s) 329
Csp6I GTAC 1 cut(s) 1274
CviQI GTAC 1 cut(s) 1274
DraI TTTAAA 3 cut(s) 249, 1686, 2094
DriI GACNNNNNGTC 1 cut(s) 1990
EaeI YGGCCR 1 cut(s) 72
Eam1105I GACNNNNNGTC 1 cut(s) 1990
Eco32I GATATC 1 cut(s) 142
Eco47I GGWCC 2 cut(s) 59, 1776
Eco57I CTGAAG 4 cut(s) 533, 849, 1962, 1965
EcoRI GAATTC 2 cut(s) 305, 697
EcoRII CCWGG 1 cut(s) 2443
EcoRV GATATC 1 cut(s) 142
EcoT22I ATGCAT 1 cut(s) 547
FaqI GGGAC 2 cut(s) 1762, 1845
FblI GTMKAC 1 cut(s) 947
Fnu4HI GCNGC 8 cut(s) 1302, 1376, 1659, 1679, 1769, 1977, 2537, 2586
Fsp4HI GCNGC 8 cut(s) 1302, 1376, 1659, 1679, 1769, 1977, 2537, 2586
FspBI CTAG 3 cut(s) 353, 1199, 1433
FspI TGCGCA 2 cut(s) 2540, 2589
GlaI GCGC 3 cut(s) 1856, 2540, 2589
GluI GCNGC 8 cut(s) 1302, 1376, 1659, 1679, 1769, 1977, 2537, 2586
GsuI CTGGAG 2 cut(s) 245, 570
HaeIII GGCC 2 cut(s) 74, 1741
HapII CCGG 2 cut(s) 130, 1483
HgaI GACGC 1 cut(s) 329
HhaI GCGC 3 cut(s) 1857, 2541, 2590
Hin6I GCGC 3 cut(s) 1855, 2539, 2588
HinP1I GCGC 3 cut(s) 1855, 2539, 2588
HincII GTYRAC 2 cut(s) 1474, 2046
HindII GTYRAC 2 cut(s) 1474, 2046
HindIII AAGCTT 2 cut(s) 492, 2622
HpaII CCGG 2 cut(s) 130, 1483
HphI GGTGA 9 cut(s) 176, 314, 398, 950, 986, 998, 1136, 1151, 1986
Hpy166II GTNNAC 4 cut(s) 948, 1474, 1697, 2046
Hpy8I GTNNAC 4 cut(s) 948, 1474, 1697, 2046
Hpy99I CGWCG 1 cut(s) 2351
HpyCH4III ACNGT 4 cut(s) 964, 1336, 2474, 2566
HpyCH4IV ACGT 2 cut(s) 2073, 2701
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 337, 1571, 1667, 2522, 2547
HpySE526I ACGT 2 cut(s) 2073, 2701
HspAI GCGC 3 cut(s) 1855, 2539, 2588
Kpn2I TCCGGA 1 cut(s) 1482
LguI GCTCTTC 2 cut(s) 599, 870
LmnI GCTCC 3 cut(s) 1309, 1910, 2522
Lsp1109I GCAGC 6 cut(s) 1288, 1387, 1645, 1963, 2523, 2572
MaeI CTAG 3 cut(s) 353, 1199, 1433
MaeII ACGT 2 cut(s) 2073, 2701
MaeIII GTNAC 3 cut(s) 974, 1076, 1992
MflI RGATCY 4 cut(s) 469, 1644, 2235, 2286
MhlI GDGCHC 4 cut(s) 415, 802, 1672, 2564
MlsI TGGCCA 1 cut(s) 74
MluNI TGGCCA 1 cut(s) 74
MlyI GAGTC 6 cut(s) 953, 1136, 1957, 2041, 2120, 2179
Mox20I TGGCCA 1 cut(s) 74
Mph1103I ATGCAT 1 cut(s) 547
MroI TCCGGA 1 cut(s) 1482
MroXI GAANNNNTTC 1 cut(s) 471
MscI TGGCCA 1 cut(s) 74
MslI CAYNNNNRTG 2 cut(s) 2056, 2408
Msp20I TGGCCA 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 1678
MspI CCGG 2 cut(s) 130, 1483
MspR9I CCNGG 1 cut(s) 2445
MvaI CCWGG 1 cut(s) 2445
MvnI CGCG 1 cut(s) 753
MwoI GCNNNNNNNGC 6 cut(s) 80, 337, 1571, 1667, 2522, 2547
NlaIV GGNNCC 3 cut(s) 60, 1778, 1894
NmuCI GTSAC 3 cut(s) 974, 1076, 1992
NsbI TGCGCA 2 cut(s) 2540, 2589
NsiI ATGCAT 1 cut(s) 547
NspI RCATGY 1 cut(s) 2654
PagI TCATGA 3 cut(s) 600, 1392, 2556
PciSI GCTCTTC 2 cut(s) 599, 870
PdmI GAANNNNTTC 1 cut(s) 471
PfeI GAWTC 8 cut(s) 113, 174, 446, 989, 1091, 1479, 1720, 2009
PflFI GACNNNGTC 1 cut(s) 339
PflMI CCANNNNNTGG 1 cut(s) 1730
PkrI GCNGC 8 cut(s) 1303, 1377, 1660, 1680, 1770, 1978, 2538, 2587
PleI GAGTC 6 cut(s) 952, 1135, 1957, 2041, 2120, 2179
PpsI GAGTC 6 cut(s) 952, 1135, 1957, 2041, 2120, 2179
PshAI GACNNNNGTC 1 cut(s) 457
Psp6I CCWGG 1 cut(s) 2443
PspGI CCWGG 1 cut(s) 2443
PspN4I GGNNCC 3 cut(s) 60, 1778, 1894
PspPI GGNCC 2 cut(s) 59, 1776
PstNI CAGNNNCTG 1 cut(s) 2003
PsuI RGATCY 4 cut(s) 469, 1644, 2235, 2286
PsyI GACNNNGTC 1 cut(s) 339
RsaI GTAC 1 cut(s) 1275
RsaNI GTAC 1 cut(s) 1274
RseI CAYNNNNRTG 2 cut(s) 2056, 2408
SapI GCTCTTC 2 cut(s) 599, 870
SatI GCNGC 8 cut(s) 1302, 1376, 1659, 1679, 1769, 1977, 2537, 2586
Sau96I GGNCC 2 cut(s) 59, 1776
SchI GAGTC 6 cut(s) 953, 1136, 1957, 2041, 2120, 2179
ScrFI CCNGG 1 cut(s) 2445
SduI GDGCHC 4 cut(s) 415, 802, 1672, 2564
SinI GGWCC 2 cut(s) 59, 1776
SmiMI CAYNNNNRTG 2 cut(s) 2056, 2408
SmlI CTYRAG 2 cut(s) 869, 2300
SmoI CTYRAG 2 cut(s) 869, 2300
SsiI CCGC 4 cut(s) 936, 1678, 1768, 2006
SspMI CTAG 3 cut(s) 353, 1199, 1433
StyD4I CCNGG 1 cut(s) 2443
TaaI ACNGT 4 cut(s) 964, 1336, 2474, 2566
TaiI ACGT 2 cut(s) 2076, 2704
TaqI TCGA 8 cut(s) 99, 138, 190, 309, 1416, 1826, 2181, 2334
TauI GCSGC 2 cut(s) 1681, 1771
TfiI GAWTC 8 cut(s) 113, 174, 446, 989, 1091, 1479, 1720, 2009
TscAI CASTG 4 cut(s) 75, 187, 1341, 2569
TseFI GTSAC 3 cut(s) 974, 1076, 1992
TseI GCWGC 6 cut(s) 1301, 1375, 1658, 1976, 2536, 2585
Tsp45I GTSAC 3 cut(s) 974, 1076, 1992
TspGWI ACGGA 1 cut(s) 785
TspRI CASTG 4 cut(s) 75, 187, 1341, 2569
Tth111I GACNNNGTC 1 cut(s) 339
Van91I CCANNNNNTGG 1 cut(s) 1730
VpaK11BI GGWCC 2 cut(s) 59, 1776
XapI RAATTY 4 cut(s) 305, 697, 1411, 2423
XceI RCATGY 1 cut(s) 2654
XmiI GTMKAC 1 cut(s) 947
XmnI GAANNNNTTC 1 cut(s) 471
XspI CTAG 3 cut(s) 353, 1199, 1433
Zsp2I ATGCAT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.