Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011043

Physical Location & Seq

Genomic Coordinates Reverse (-)

3275270 .. 3278709

Gene Structure 3440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

ATGGACGGTGATCTAATGGAAGGAGAGGAAAATAGACCTAAAAGCAAGAAGGAAGTAATGAAGGAGGTTATGGCAAAAGACAAATATTATAGGGCAGAAAGAGCAAAAGATAAGGAAGAACTAGAAGATTTTAGGCAAGAATTGGACAAATCTTTCACATCTATAGTGCCCTCCAAACTGTTACAAATTGCTGAACCAGAGATGAAGATTCCGAATGAGCATTCAAAGAAGGATGAGCTTTCTGAACAGGAAAAATCCCGCTCGTATTTCAAAACTTTTGGCAACCTAGTCATGGTTAGCCGTGCTCAACCCTCAGACAGGACAAAGACACCTGAAGAGATAGCACAAGAGGAGAGAGAGCAGCTTGAGCATTTAGAGGAAGAGAGACAGAAGAGGATGCTTGCCACTGACATCAATAGCGACGATGACAATGAAGATGCTGAGAAACCATCCAACCAGAAGCCAAGACCCATATCTGGAGACGATCTTGGTGATTCCTTCTCACTTGATGAAGAGCCACGGATTAAAAAGGGTTGGGTTGATGAGATTCTAGAAAGAAATGATGCTAGTGATTCTGAGAGTGAAGAAGGCGACGCTTCTGAGGATTCAGAAAGTCCTGAGGATGACAGTGAAGGATCTGATAAAGATATTAATCTAGGTGAAAAGAGTCTATTTATGAAGGACTGGGAACAAAGTGATGATGATAATCTTGGAAATGATTTGGATGAGGAGGAAGAAGAAGAAGATGGGTCTGAAGCACATGAAGAGGATGATGATGCTGACGAAGAAGAGATGGAACCAAGAAAGCTGAAAAAAATGAAAAAAGTTGATGCTGCTGAAGCCGGTAAAAAAGAGGGTGATTTTTTAGATGCCAAGAAAATATCTCAGCACGGTAAACGACCTTCTACTCAATCAGACCTCCCATACCTAATTGAAGCTCCAAAAAGCTTCGAAGAATTAGGTGTATTGGTGGATAATCTTTCTAATGCTGACATTGTCTTGATTATCAATCGAATCCGGAAAAGCAATGCAATCAAGCTTGCAGCAGAAAACCGGAAGAAAATGCAAGTATTTTATGGTGTACTTCTGCAGTATTTTGCCATATTAGCAAATAAAAAGCCACTGAATATGGAGTTGTTAAATTTTTTGGTTAAGCCATTGATTGAGATGAGTATGGAGACTCCATACTTCGCTGCAATTTGTGCTCGTGAGAGAATTTTACGGGCTCGGACAGAATTTAGTGAGACAGTTAAGAACCCAGAAAAGAGTTGTTGGCCTTCTTCAAAGACATTATTTCTTCTGAGGCTTTGGTCCTTGATATTTCCATGCTCTGATTTTCGTCATGTGGTCATGACTCCAGCAACACTGTTGATGTGTGAATATCTGGCTCGTTGTCCTATCGTGTCTGGTCGTGATACTGCAGTTGGTTCTTTCTTGTGCTCTATGCTTCTCAGTATCGACCAAACAATCTCGGAAGTTCTGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nop14

Protein Analysis

496

Amino Acids

56.61

Weight (kDa)

4.6

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69070 AT1G69070
fragaria_vesca	FvH4_4g29570 FvH4_4g29570 FvH4_4g29570
malus_domestica	MD13G1058900.v1.1 MD16G1058200.v1.1
prunus_persica	Prupe.1G290900_v2.0.a1
pyrus_communis	pycom16g05090
rosa_chinensis	RchiOBHm_Chr4g0437801
rosa_laevigata	RLG00000006412
rosa_multiflora	Rmu_sc0004193.1_g000019
rosa_roxburghii	Rroxscaffold_5G00378900
rosa_rugosa	Rorug04G0303800 Rorug04G0303800
rosa_samantha	Rh4AG356100 Rh4BG366700 Rh4CG380700 Rh4DG361200
rosa_wichuraiana	Rw4G031410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	261
AccIII	TCCGGA	1 cut(s)	1017
AciI	CCGC	1 cut(s)	259
AclWI	GGATC	1 cut(s)	643
AcsI	RAATTY	3 cut(s)	1141, 1215, 1235
AcuI	CTGAAG	3 cut(s)	354, 774, 858
AfaI	GTAC	1 cut(s)	1083
AfiI	CCNNNNNNNGG	3 cut(s)	292, 318, 476
AgsI	TTSAA	4 cut(s)	225, 271, 935, 1284
AluBI	AGCT	6 cut(s)	238, 364, 808, 938, 948, 1039
AluI	AGCT	6 cut(s)	238, 364, 808, 938, 948, 1039
Alw21I	GWGCWC	3 cut(s)	307, 1207, 1442
Alw26I	GTCTC	4 cut(s)	379, 474, 1172, 1238
AlwI	GGATC	1 cut(s)	643
Aor13HI	TCCGGA	1 cut(s)	1017
AoxI	GGCC	1 cut(s)	1274
ApeKI	GCWGC	4 cut(s)	361, 833, 1043, 1193
ApoI	RAATTY	3 cut(s)	1141, 1215, 1235
AseI	ATTAAT	1 cut(s)	651
AspS9I	GGNCC	1 cut(s)	1311
AsuHPI	GGTGA	4 cut(s)	20, 503, 671, 869
AsuII	TTCGAA	1 cut(s)	951
AvaII	GGWCC	1 cut(s)	1311
AxyI	CCTNAGG	1 cut(s)	618
BaeGI	GKGCMC	1 cut(s)	171
BaeI	ACNNNNGTAYC	2 cut(s)	1407, 1440
BanII	GRGCYC	1 cut(s)	1228
BarI	GAAGNNNNNNTAC	2 cut(s)	886, 918
BauI	CACGAG	1 cut(s)	1206
Bbv12I	GWGCWC	3 cut(s)	307, 1207, 1442
BbvI	GCAGC	4 cut(s)	373, 820, 1055, 1180
BccI	CCATC	3 cut(s)	457, 740, 787
BceAI	ACGGC	1 cut(s)	285
BcoDI	GTCTC	4 cut(s)	379, 474, 1172, 1238
BfaI	CTAG	5 cut(s)	122, 287, 551, 567, 656
BfmI	CTRYAG	3 cut(s)	162, 1088, 1419
BisI	GCNGC	4 cut(s)	362, 834, 1044, 1194
BlsI	GCNGC	4 cut(s)	363, 835, 1045, 1195
Bme18I	GGWCC	1 cut(s)	1311
BmgT120I	GGNCC	1 cut(s)	1311
BmiI	GGNNCC	1 cut(s)	798
BmrI	ACTGGG	1 cut(s)	694
BmsI	GCATC	6 cut(s)	387, 427, 553, 766, 820, 859
BmuI	ACTGGG	1 cut(s)	694
BpmI	CTGGAG	2 cut(s)	498, 1341
Bpu14I	TTCGAA	1 cut(s)	951
BpuEI	CTTGAG	1 cut(s)	386
BsaBI	GATNNNNATC	2 cut(s)	651, 705
BsaJI	CCNNGG	1 cut(s)	518
BsaWI	WCCGGW	2 cut(s)	1017, 1053
Bsc4I	CCNNNNNNNGG	3 cut(s)	292, 318, 476
Bse118I	RCCGGY	1 cut(s)	842
Bse1I	ACTGG	1 cut(s)	689
Bse21I	CCTNAGG	1 cut(s)	618
Bse3DI	GCAATG	1 cut(s)	1033
Bse8I	GATNNNNATC	2 cut(s)	651, 705
BseAI	TCCGGA	1 cut(s)	1017
BseDI	CCNNGG	1 cut(s)	518
BseGI	GGATG	6 cut(s)	238, 402, 449, 628, 730, 775
BseJI	GATNNNNATC	2 cut(s)	651, 705
BseLI	CCNNNNNNNGG	3 cut(s)	292, 318, 476
BseMI	GCAATG	1 cut(s)	1033
BseMII	CTCAG	8 cut(s)	327, 432, 567, 591, 609, 899, 1292, 1465
BseNI	ACTGG	1 cut(s)	689
BseRI	GAGGAG	2 cut(s)	365, 743
BseSI	GKGCMC	1 cut(s)	171
BseXI	GCAGC	4 cut(s)	373, 820, 1055, 1180
BshFI	GGCC	1 cut(s)	1276
BsiHKAI	GWGCWC	3 cut(s)	307, 1207, 1442
BsiSI	CCGG	3 cut(s)	843, 1018, 1054
BslI	CCNNNNNNNGG	3 cut(s)	292, 318, 476
BsmAI	GTCTC	4 cut(s)	379, 474, 1172, 1238
BsmBI	CGTCTC	1 cut(s)	474
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	1276
Bsp119I	TTCGAA	1 cut(s)	951
Bsp1286I	GDGCHC	5 cut(s)	171, 307, 1207, 1228, 1442
Bsp13I	TCCGGA	1 cut(s)	1017
Bsp143I	GATC	3 cut(s)	10, 484, 635
BspACI	CCGC	1 cut(s)	259
BspANI	GGCC	1 cut(s)	1276
BspCNI	CTCAG	8 cut(s)	326, 433, 568, 592, 610, 898, 1293, 1464
BspEI	TCCGGA	1 cut(s)	1017
BspHI	TCATGA	1 cut(s)	1350
BspLI	GGNNCC	1 cut(s)	798
BspMAI	CTGCAG	2 cut(s)	1092, 1423
BspPI	GGATC	1 cut(s)	643
BspQI	GCTCTTC	1 cut(s)	507
BspT104I	TTCGAA	1 cut(s)	951
BsrBI	CCGCTC	1 cut(s)	261
BsrDI	GCAATG	1 cut(s)	1033
BsrFI	RCCGGY	1 cut(s)	842
BsrI	ACTGG	1 cut(s)	689
BssAI	RCCGGY	1 cut(s)	842
BssECI	CCNNGG	1 cut(s)	518
BssMI	GATC	3 cut(s)	10, 484, 635
BssSI	CACGAG	1 cut(s)	1206
Bst2BI	CACGAG	1 cut(s)	1206
Bst4CI	ACNGT	6 cut(s)	8, 180, 629, 893, 1249, 1368
Bst6I	CTCTTC	6 cut(s)	330, 375, 386, 507, 759, 783
BstAPI	GCANNNNNTGC	1 cut(s)	1202
BstBI	TTCGAA	1 cut(s)	951
BstC8I	GCNNGC	2 cut(s)	402, 1041
BstDEI	CTNAG	8 cut(s)	313, 441, 576, 600, 618, 885, 1301, 1451
BstDSI	CCRYGG	1 cut(s)	518
BstENI	CCTNNNNNAGG	1 cut(s)	316
BstF5I	GGATG	6 cut(s)	238, 402, 449, 628, 730, 775
BstKTI	GATC	3 cut(s)	13, 487, 638
BstMAI	GTCTC	4 cut(s)	379, 474, 1172, 1238
BstMBI	GATC	3 cut(s)	10, 484, 635
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 367, 839, 1106, 1202
BstSFI	CTRYAG	3 cut(s)	162, 1088, 1419
BstSLI	GKGCMC	1 cut(s)	171
BstV1I	GCAGC	4 cut(s)	373, 820, 1055, 1180
BstX2I	RGATCY	1 cut(s)	635
BstYI	RGATCY	1 cut(s)	635
Bsu36I	CCTNAGG	1 cut(s)	618
BsuRI	GGCC	1 cut(s)	1276
BtgI	CCRYGG	1 cut(s)	518
BtsCI	GGATG	6 cut(s)	238, 402, 449, 628, 730, 775
BtsIMutI	CAGTG	4 cut(s)	405, 634, 1121, 1364
Cac8I	GCNNGC	2 cut(s)	402, 1041
CciI	TCATGA	1 cut(s)	1350
Cfr10I	RCCGGY	1 cut(s)	842
Cfr13I	GGNCC	1 cut(s)	1311
CseI	GACGC	1 cut(s)	602
Csp6I	GTAC	1 cut(s)	1082
CviAII	CATG	5 cut(s)	292, 761, 1326, 1343, 1351
CviQI	GTAC	1 cut(s)	1082
DdeI	CTNAG	8 cut(s)	313, 441, 576, 600, 618, 885, 1301, 1451
DpnI	GATC	3 cut(s)	12, 486, 637
DpnII	GATC	3 cut(s)	10, 484, 635
Eam1104I	CTCTTC	6 cut(s)	330, 375, 386, 507, 759, 783
EarI	CTCTTC	6 cut(s)	330, 375, 386, 507, 759, 783
Eco24I	GRGCYC	1 cut(s)	1228
Eco47I	GGWCC	1 cut(s)	1311
Eco57I	CTGAAG	3 cut(s)	354, 774, 858
Eco81I	CCTNAGG	1 cut(s)	618
EcoNI	CCTNNNNNAGG	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	1228
Esp3I	CGTCTC	1 cut(s)	474
FaeI	CATG	5 cut(s)	295, 764, 1329, 1346, 1354
FatI	CATG	5 cut(s)	291, 760, 1325, 1342, 1350
FauI	CCCGC	1 cut(s)	266
Fnu4HI	GCNGC	4 cut(s)	362, 834, 1044, 1194
FokI	GGATG	6 cut(s)	245, 409, 436, 635, 737, 782
FriOI	GRGCYC	1 cut(s)	1228
Fsp4HI	GCNGC	4 cut(s)	362, 834, 1044, 1194
FspBI	CTAG	5 cut(s)	122, 287, 551, 567, 656
GluI	GCNGC	4 cut(s)	362, 834, 1044, 1194
GsuI	CTGGAG	2 cut(s)	498, 1341
HaeIII	GGCC	1 cut(s)	1276
HapII	CCGG	3 cut(s)	843, 1018, 1054
HgaI	GACGC	1 cut(s)	602
Hin1II	CATG	5 cut(s)	295, 764, 1329, 1346, 1354
HindIII	AAGCTT	2 cut(s)	946, 1037
HinfI	GANTC	9 cut(s)	208, 494, 547, 572, 605, 667, 1014, 1180, 1354
HpaII	CCGG	3 cut(s)	843, 1018, 1054
HphI	GGTGA	4 cut(s)	20, 503, 671, 869
Hpy166II	GTNNAC	2 cut(s)	896, 1082
Hpy188III	TCNNGA	9 cut(s)	477, 551, 617, 1000, 1018, 1208, 1351, 1412, 1485
Hpy8I	GTNNAC	2 cut(s)	896, 1082
Hpy99I	CGWCG	2 cut(s)	425, 596
HpyCH4III	ACNGT	6 cut(s)	8, 180, 629, 893, 1249, 1368
HpyCH4V	TGCA	6 cut(s)	1031, 1043, 1066, 1090, 1196, 1421
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 367, 839, 1106, 1202
HpyF3I	CTNAG	8 cut(s)	313, 441, 576, 600, 618, 885, 1301, 1451
Hsp92II	CATG	5 cut(s)	295, 764, 1329, 1346, 1354
Kpn2I	TCCGGA	1 cut(s)	1017
Kzo9I	GATC	3 cut(s)	10, 484, 635
LguI	GCTCTTC	1 cut(s)	507
LmnI	GCTCC	1 cut(s)	943
Lsp1109I	GCAGC	4 cut(s)	373, 820, 1055, 1180
LweI	GCATC	6 cut(s)	387, 427, 553, 766, 820, 859
MaeI	CTAG	5 cut(s)	122, 287, 551, 567, 656
MaeIII	GTNAC	1 cut(s)	180
MalI	GATC	3 cut(s)	12, 486, 637
MbiI	CCGCTC	1 cut(s)	261
MboI	GATC	3 cut(s)	10, 484, 635
MflI	RGATCY	1 cut(s)	635
MhlI	GDGCHC	5 cut(s)	171, 307, 1207, 1228, 1442
MluCI	AATT	8 cut(s)	140, 186, 930, 956, 1141, 1197, 1215, 1235
MlyI	GAGTC	3 cut(s)	676, 1174, 1348
MmeI	TCCRAC	1 cut(s)	477
MroI	TCCGGA	1 cut(s)	1017
MseI	TTAA	5 cut(s)	525, 651, 1139, 1152, 1251
MspI	CCGG	3 cut(s)	843, 1018, 1054
Mva1269I	GAATGC	1 cut(s)	220
MwoI	GCNNNNNNNGC	5 cut(s)	101, 367, 839, 1106, 1202
NdeII	GATC	3 cut(s)	10, 484, 635
NlaIII	CATG	5 cut(s)	295, 764, 1329, 1346, 1354
NlaIV	GGNNCC	1 cut(s)	798
NspV	TTCGAA	1 cut(s)	951
PagI	TCATGA	1 cut(s)	1350
PciSI	GCTCTTC	1 cut(s)	507
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	6 cut(s)	208, 494, 547, 572, 605, 1014
PflFI	GACNNNGTC	1 cut(s)	995
PkrI	GCNGC	4 cut(s)	363, 835, 1045, 1195
PleI	GAGTC	3 cut(s)	675, 1174, 1348
PpsI	GAGTC	3 cut(s)	675, 1174, 1348
PshBI	ATTAAT	1 cut(s)	651
PspN4I	GGNNCC	1 cut(s)	798
PspPI	GGNCC	1 cut(s)	1311
PstI	CTGCAG	2 cut(s)	1092, 1423
PsuI	RGATCY	1 cut(s)	635
PsyI	GACNNNGTC	1 cut(s)	995
RsaI	GTAC	1 cut(s)	1083
RsaNI	GTAC	1 cut(s)	1082
SapI	GCTCTTC	1 cut(s)	507
SaqAI	TTAA	5 cut(s)	525, 651, 1139, 1152, 1251
SatI	GCNGC	4 cut(s)	362, 834, 1044, 1194
Sau3AI	GATC	3 cut(s)	10, 484, 635
Sau96I	GGNCC	1 cut(s)	1311
SchI	GAGTC	3 cut(s)	676, 1174, 1348
SduI	GDGCHC	5 cut(s)	171, 307, 1207, 1228, 1442
SfaNI	GCATC	6 cut(s)	387, 427, 553, 766, 820, 859
SfcI	CTRYAG	3 cut(s)	162, 1088, 1419
SfuI	TTCGAA	1 cut(s)	951
SinI	GGWCC	1 cut(s)	1311
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	8 cut(s)	140, 186, 930, 956, 1141, 1197, 1215, 1235
SsiI	CCGC	1 cut(s)	259
SspI	AATATT	1 cut(s)	86
SspMI	CTAG	5 cut(s)	122, 287, 551, 567, 656
TaaI	ACNGT	6 cut(s)	8, 180, 629, 893, 1249, 1368
TaqI	TCGA	3 cut(s)	951, 1012, 1458
TasI	AATT	8 cut(s)	140, 186, 930, 956, 1141, 1197, 1215, 1235
TatI	WGTACW	1 cut(s)	1081
TfiI	GAWTC	6 cut(s)	208, 494, 547, 572, 605, 1014
Tru1I	TTAA	5 cut(s)	525, 651, 1139, 1152, 1251
Tru9I	TTAA	5 cut(s)	525, 651, 1139, 1152, 1251
TscAI	CASTG	4 cut(s)	412, 634, 1128, 1371
TseI	GCWGC	4 cut(s)	361, 833, 1043, 1193
TspDTI	ATGAA	7 cut(s)	74, 218, 447, 525, 692, 777, 833
TspGWI	ACGGA	1 cut(s)	535
TspRI	CASTG	4 cut(s)	412, 634, 1128, 1371
Tth111I	GACNNNGTC	1 cut(s)	995
VpaK11BI	GGWCC	1 cut(s)	1311
VspI	ATTAAT	1 cut(s)	651
XagI	CCTNNNNNAGG	1 cut(s)	316
XapI	RAATTY	3 cut(s)	1141, 1215, 1235
XbaI	TCTAGA	1 cut(s)	550
XspI	CTAG	5 cut(s)	122, 287, 551, 567, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.