Rorug04G0303800

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003407
Physical Location & Seq
Forward (+)
47921370 .. 47923721
2352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0303800.1

Sequence Viewer

Length: 684 bp
ATGCTTGGGGTCAGCTTTCAGGTTGCACACTTTGTCACACCGTTCAACTATGACAGAATAGAAAGCATTCATGCAGCTCTCAATGGTACTCTTCCGGAGGATATCCGTGTTAGGGAAATTAGTCCTGCTATGCCTGAATTCCATGCTCGTTTTTCAGCCCAAAGGAAGGTGTATCATTACAGAATATATAATGACACATTCATGGACCCATTTCAGCGTCACAATGCTTACCATAGTGCTCATAAGTTGAACCCTGCTGTTATGAGAGAAGCTGCGAAGTATTTTATTGGAAAGCATGATTTCTCTGCTTTTGTAAATGCATCCCAGAAGGAGCGAGTGCGGGATCCAGTAAAGGATATATTCCGTTTTGATGTTGTCCAAATGGGGGCTCTTTTACAGCTTGAAGTTGAAGGCTCGGGATTCTTATATAGACAAGTCCGGAACATGGTCGCTCTGCTACTTCAAATCGGAAGGGAAGTAGTTCCCCCTGACATTGTACCCAAGATATTGGCAACACGAAATCGAAGGGAGCTTGCTAAATATTCCTTGTTGGCTCCACCCCAAGGGCTTTGTCTTATGGCAGTCGAGTATAACGAGGACCATCTACGGCTTCCATCTGGTTCCCCTAACCCCAGTTTTGGTAGGCATTATACTATAAAATCTTGTAAGCTTCCATTCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

227

Amino Acids

26.16

Weight (kDa)

9.43

Isoelectric Point (pI)

51.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PseudoU_synth_1 PF01416 91 - 198 2.4e-26 tRNA pseudouridine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 94, 438
AciI CCGC 1 cut(s) 340
AclWI GGATC 2 cut(s) 338, 351
AcsI RAATTY 1 cut(s) 137
AfaI GTAC 2 cut(s) 88, 498
AfiI CCNNNNNNNGG 6 cut(s) 112, 166, 385, 445, 563, 638
AgsI TTSAA 5 cut(s) 46, 250, 404, 410, 464
AluBI AGCT 6 cut(s) 15, 77, 272, 400, 532, 670
AluI AGCT 6 cut(s) 15, 77, 272, 400, 532, 670
Alw21I GWGCWC 1 cut(s) 241
AlwI GGATC 2 cut(s) 338, 351
Ama87I CYCGRG 1 cut(s) 415
Aor13HI TCCGGA 2 cut(s) 94, 438
ApeKI GCWGC 2 cut(s) 74, 272
ApoI RAATTY 1 cut(s) 137
Asp700I GAANNNNTTC 2 cut(s) 66, 480
AspS9I GGNCC 2 cut(s) 205, 598
AvaI CYCGRG 1 cut(s) 415
AvaII GGWCC 2 cut(s) 205, 598
BamHI GGATCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 391
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 2 cut(s) 86, 259
BccI CCATC 2 cut(s) 609, 622
BceAI ACGGC 1 cut(s) 623
BisI GCNGC 2 cut(s) 75, 273
BlsI GCNGC 2 cut(s) 76, 274
Bme18I GGWCC 2 cut(s) 205, 598
BmeT110I CYCGRG 1 cut(s) 415
BmgT120I GGNCC 2 cut(s) 205, 598
BmiI GGNNCC 4 cut(s) 207, 345, 555, 622
BmrI ACTGGG 1 cut(s) 627
BmsI GCATC 1 cut(s) 329
BmuI ACTGGG 1 cut(s) 627
BsaJI CCNNGG 1 cut(s) 562
BsaWI WCCGGW 2 cut(s) 94, 438
Bsc4I CCNNNNNNNGG 6 cut(s) 112, 166, 385, 445, 563, 638
Bse1I ACTGG 2 cut(s) 347, 633
BseAI TCCGGA 2 cut(s) 94, 438
BseDI CCNNGG 1 cut(s) 562
BseGI GGATG 1 cut(s) 320
BseLI CCNNNNNNNGG 6 cut(s) 112, 166, 385, 445, 563, 638
BseNI ACTGG 2 cut(s) 347, 633
BseXI GCAGC 2 cut(s) 86, 259
BsiHKAI GWGCWC 1 cut(s) 241
BsiHKCI CYCGRG 1 cut(s) 415
BsiSI CCGG 2 cut(s) 95, 439
BslI CCNNNNNNNGG 6 cut(s) 112, 166, 385, 445, 563, 638
BsmI GAATGC 1 cut(s) 66
BsoBI CYCGRG 1 cut(s) 415
Bsp1286I GDGCHC 2 cut(s) 241, 391
Bsp13I TCCGGA 2 cut(s) 94, 438
Bsp143I GATC 1 cut(s) 343
BspACI CCGC 1 cut(s) 340
BspEI TCCGGA 2 cut(s) 94, 438
BspLI GGNNCC 4 cut(s) 207, 345, 555, 622
BspPI GGATC 2 cut(s) 338, 351
BsrI ACTGG 2 cut(s) 347, 633
BssECI CCNNGG 1 cut(s) 562
BssMI GATC 1 cut(s) 343
BssT1I CCWWGG 1 cut(s) 562
Bst4CI ACNGT 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 534
BstF5I GGATG 1 cut(s) 320
BstKTI GATC 1 cut(s) 346
BstMBI GATC 1 cut(s) 343
BstV1I GCAGC 2 cut(s) 86, 259
BstX2I RGATCY 1 cut(s) 343
BstXI CCANNNNNNTGG 1 cut(s) 508
BstYI RGATCY 1 cut(s) 343
BtsCI GGATG 1 cut(s) 320
Cac8I GCNNGC 1 cut(s) 534
Cfr13I GGNCC 2 cut(s) 205, 598
CseI GACGC 1 cut(s) 206
Csp6I GTAC 2 cut(s) 87, 497
CviAII CATG 5 cut(s) 71, 143, 202, 296, 445
CviQI GTAC 2 cut(s) 87, 497
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 562
Eco24I GRGCYC 1 cut(s) 391
Eco32I GATATC 1 cut(s) 103
Eco47I GGWCC 2 cut(s) 205, 598
Eco88I CYCGRG 1 cut(s) 415
EcoRI GAATTC 1 cut(s) 137
EcoRV GATATC 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 562
EcoT22I ATGCAT 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 562
FaeI CATG 5 cut(s) 74, 146, 205, 299, 448
FatI CATG 5 cut(s) 70, 142, 201, 295, 444
FauI CCCGC 1 cut(s) 333
Fnu4HI GCNGC 2 cut(s) 75, 273
FokI GGATG 1 cut(s) 307
FriOI GRGCYC 1 cut(s) 391
Fsp4HI GCNGC 2 cut(s) 75, 273
GluI GCNGC 2 cut(s) 75, 273
HapII CCGG 2 cut(s) 95, 439
HgaI GACGC 1 cut(s) 206
Hin1II CATG 5 cut(s) 74, 146, 205, 299, 448
HindIII AAGCTT 1 cut(s) 668
HinfI GANTC 1 cut(s) 420
HpaII CCGG 2 cut(s) 95, 439
Hpy188I TCNGA 1 cut(s) 470
Hpy188III TCNNGA 3 cut(s) 95, 417, 439
HpyAV CCTTC 5 cut(s) 160, 322, 404, 465, 519
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4V TGCA 3 cut(s) 26, 74, 320
Hsp92II CATG 5 cut(s) 74, 146, 205, 299, 448
Kpn2I TCCGGA 2 cut(s) 94, 438
Kzo9I GATC 1 cut(s) 343
LmnI GCTCC 3 cut(s) 331, 529, 559
Lsp1109I GCAGC 2 cut(s) 86, 259
LweI GCATC 1 cut(s) 329
MaeIII GTNAC 2 cut(s) 34, 218
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 1 cut(s) 83
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 2 cut(s) 241, 391
MluCI AATT 2 cut(s) 117, 137
MnlI CCTC 2 cut(s) 91, 589
Mph1103I ATGCAT 1 cut(s) 322
MroI TCCGGA 2 cut(s) 94, 438
MroXI GAANNNNTTC 2 cut(s) 66, 480
MslI CAYNNNNRTG 1 cut(s) 200
MspI CCGG 2 cut(s) 95, 439
Mva1269I GAATGC 1 cut(s) 66
NdeII GATC 1 cut(s) 343
NlaIII CATG 5 cut(s) 74, 146, 205, 299, 448
NlaIV GGNNCC 4 cut(s) 207, 345, 555, 622
NmuCI GTSAC 2 cut(s) 34, 218
NsiI ATGCAT 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 591
PctI GAATGC 1 cut(s) 66
PdmI GAANNNNTTC 2 cut(s) 66, 480
PfeI GAWTC 1 cut(s) 420
PkrI GCNGC 2 cut(s) 76, 274
PspN4I GGNNCC 4 cut(s) 207, 345, 555, 622
PspPI GGNCC 2 cut(s) 205, 598
PsuI RGATCY 1 cut(s) 343
RsaI GTAC 2 cut(s) 88, 498
RsaNI GTAC 2 cut(s) 87, 497
RseI CAYNNNNRTG 1 cut(s) 200
SatI GCNGC 2 cut(s) 75, 273
Sau3AI GATC 1 cut(s) 343
Sau96I GGNCC 2 cut(s) 205, 598
SduI GDGCHC 2 cut(s) 241, 391
SetI ASST 8 cut(s) 17, 24, 79, 171, 274, 402, 534, 672
SfaNI GCATC 1 cut(s) 329
SinI GGWCC 2 cut(s) 205, 598
SmiMI CAYNNNNRTG 1 cut(s) 200
Sse9I AATT 2 cut(s) 117, 137
SsiI CCGC 1 cut(s) 340
SspI AATATT 1 cut(s) 542
StyI CCWWGG 1 cut(s) 562
TaaI ACNGT 1 cut(s) 42
TaqI TCGA 2 cut(s) 523, 585
TasI AATT 2 cut(s) 117, 137
TfiI GAWTC 1 cut(s) 420
TseFI GTSAC 2 cut(s) 34, 218
TseI GCWGC 2 cut(s) 74, 272
Tsp45I GTSAC 2 cut(s) 34, 218
TspDTI ATGAA 2 cut(s) 59, 190
TspGWI ACGGA 2 cut(s) 95, 353
VpaK11BI GGWCC 2 cut(s) 205, 598
XapI RAATTY 1 cut(s) 137
XmnI GAANNNNTTC 2 cut(s) 66, 480
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.