pycom14g17860

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0003407
Physical Location & Seq
Forward (+)
19697180 .. 19698486
1307 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g17860.1

Sequence Viewer

Length: 822 bp
ATGCCCTTGAAAAAACAAAAGGTTCCAAGTCTGACCTTATTATTTGTATATATATGTACATGTACAGCCAGCCATTTTTCCAACCAGCAAAACCAATATTGTCAACGAAAAATGAGCAGGAAATATGCAAGATTGTGTGGTGGCCGGCCGACTGTTTGTCTTCCAATCCATCCACTGTCTCTCCGGTCGAAACACACGTCTAGACGGCGTTCCGGTTCTGTCAAAGCTACTACTGATCATAACAGCACAGAGTTTTTGAACAATATCAGCAGCAGCGGGGATGATGACTTGAGTAGTACTGCAGAGGATGTGAAAAGTGGGAACAAGATAATGGTTGTTGTGGATTCAAGCCTTGAAGCTAAGGGAGCTCTCGAATGGGCACTATCCCACACTGTCCAATCCCAGGATACCATTGTTCTTCTTCATGTAGCCAAACCCTCCAAACAACAAGACTCAAATGGGAAGACTAATTTGAGGGCTTTTGAACTGCTTCACTCTATGAAAAATGTGTGTCAAAGAAAACGGCCTGGGGTGAATGTGGAGGTAGCATTGCTTGAAGGGAAAGAGAGGGGCCCAAGAACAGTGGAAGAAGCAAAGAGACAAAGGGTGTCCCTACTTGTTCTTGGCCAAAAAAGAAAGAGGTCGAACTGGTGGCAGCTTATCACGAGGTGGACGAGGAGCAGATCATCGGGGGAGGTTTTTGTGGAATACTGCATTCAAAATGCTGCATGCATGACGATTGCAGTGAGGAGAAAGAGCAAGAAATTGGGAGGTTACTTGATCACCACCAAGCTTCACAAGAATTTCTGGCTTCTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

274

Amino Acids

30.85

Weight (kDa)

10.16

Isoelectric Point (pI)

58.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 109 - 250 3.5e-12 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 276
AcoI YGGCCR 3 cut(s) 142, 146, 625
AcsI RAATTY 1 cut(s) 802
AdeI CACNNNGTG 1 cut(s) 669
AfaI GTAC 3 cut(s) 58, 64, 298
AfiI CCNNNNNNNGG 1 cut(s) 403
AflIII ACRYGT 2 cut(s) 59, 195
AgsI TTSAA 7 cut(s) 10, 259, 348, 356, 485, 557, 719
AhdI GACNNNNNGTC 1 cut(s) 156
AjiI CACGTC 1 cut(s) 198
AjnI CCWGG 2 cut(s) 402, 526
AluBI AGCT 5 cut(s) 227, 359, 368, 658, 793
AluI AGCT 5 cut(s) 227, 359, 368, 658, 793
Alw21I GWGCWC 1 cut(s) 370
Alw26I GTCTC 2 cut(s) 183, 592
AoxI GGCC 5 cut(s) 142, 146, 524, 571, 625
ApaI GGGCCC 1 cut(s) 575
ApeKI GCWGC 4 cut(s) 270, 273, 655, 725
ApoI RAATTY 1 cut(s) 802
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
Asp700I GAANNNNTTC 1 cut(s) 489
AspS9I GGNCC 2 cut(s) 571, 572
AsuHPI GGTGA 2 cut(s) 544, 775
BaeGI GKGCMC 2 cut(s) 382, 575
BaeI ACNNNNGTAYC 2 cut(s) 399, 432
BalI TGGCCA 1 cut(s) 627
BanII GRGCYC 2 cut(s) 370, 575
BauI CACGAG 1 cut(s) 664
BbsI GAAGAC 2 cut(s) 152, 470
Bbv12I GWGCWC 1 cut(s) 370
BbvI GCAGC 4 cut(s) 282, 285, 667, 712
BccI CCATC 1 cut(s) 177
BceAI ACGGC 2 cut(s) 221, 539
BciT130I CCWGG 2 cut(s) 404, 528
BciVI GTATCC 1 cut(s) 400
BclI TGATCA 2 cut(s) 235, 780
BcoDI GTCTC 2 cut(s) 183, 592
BfaI CTAG 1 cut(s) 201
BfmI CTRYAG 1 cut(s) 300
BfuI GTATCC 1 cut(s) 400
BisI GCNGC 4 cut(s) 271, 274, 656, 726
BlsI GCNGC 4 cut(s) 272, 275, 657, 727
BmcAI AGTACT 1 cut(s) 298
Bme1390I CCNGG 2 cut(s) 404, 528
BmeRI GACNNNNNGTC 1 cut(s) 156
BmgBI CACGTC 1 cut(s) 198
BmgT120I GGNCC 2 cut(s) 571, 572
BmiI GGNNCC 3 cut(s) 24, 572, 573
BmrFI CCNGG 2 cut(s) 404, 528
BpiI GAAGAC 2 cut(s) 152, 470
Bpu10I CCTNAGC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 310
BsaJI CCNNGG 2 cut(s) 402, 527
BsaWI WCCGGW 2 cut(s) 183, 212
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 403
Bse118I RCCGGY 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 653
Bse3DI GCAATG 1 cut(s) 548
BseBI CCWGG 2 cut(s) 404, 528
BseDI CCNNGG 2 cut(s) 402, 527
BseGI GGATG 3 cut(s) 169, 286, 313
BseLI CCNNNNNNNGG 1 cut(s) 403
BseMI GCAATG 1 cut(s) 548
BseNI ACTGG 1 cut(s) 653
BseRI GAGGAG 2 cut(s) 691, 763
BseSI GKGCMC 2 cut(s) 382, 575
BseX3I CGGCCG 1 cut(s) 146
BseXI GCAGC 4 cut(s) 282, 285, 667, 712
Bsh1285I CGRYCG 2 cut(s) 149, 188
BshFI GGCC 5 cut(s) 144, 148, 526, 573, 627
BsiEI CGRYCG 2 cut(s) 149, 188
BsiHKAI GWGCWC 1 cut(s) 370
BsiSI CCGG 3 cut(s) 145, 184, 213
BslFI GGGAC 1 cut(s) 595
BslI CCNNNNNNNGG 1 cut(s) 403
BsmAI GTCTC 2 cut(s) 183, 592
BsmFI GGGAC 1 cut(s) 595
BsmI GAATGC 1 cut(s) 714
BsnI GGCC 5 cut(s) 144, 148, 526, 573, 627
Bsp120I GGGCCC 1 cut(s) 571
Bsp1286I GDGCHC 3 cut(s) 370, 382, 575
Bsp1407I TGTACA 2 cut(s) 56, 62
Bsp143I GATC 3 cut(s) 235, 683, 780
BspACI CCGC 1 cut(s) 276
BspANI GGCC 5 cut(s) 144, 148, 526, 573, 627
BspLI GGNNCC 3 cut(s) 24, 572, 573
BspMAI CTGCAG 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 548
BsrFI RCCGGY 1 cut(s) 144
BsrGI TGTACA 2 cut(s) 56, 62
BsrI ACTGG 1 cut(s) 653
BssAI RCCGGY 1 cut(s) 144
BssECI CCNNGG 2 cut(s) 402, 527
BssMI GATC 3 cut(s) 235, 683, 780
BssSI CACGAG 1 cut(s) 664
Bst2BI CACGAG 1 cut(s) 664
Bst2UI CCWGG 2 cut(s) 404, 528
Bst4CI ACNGT 4 cut(s) 154, 177, 394, 583
BstAUI TGTACA 2 cut(s) 56, 62
BstC8I GCNNGC 3 cut(s) 70, 146, 730
BstDEI CTNAG 1 cut(s) 360
BstF5I GGATG 3 cut(s) 169, 286, 313
BstKTI GATC 3 cut(s) 238, 686, 783
BstMAI GTCTC 2 cut(s) 183, 592
BstMBI GATC 3 cut(s) 235, 683, 780
BstMCI CGRYCG 2 cut(s) 149, 188
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstNI CCWGG 2 cut(s) 404, 528
BstNSI RCATGY 2 cut(s) 63, 732
BstSCI CCNGG 2 cut(s) 402, 526
BstSFI CTRYAG 1 cut(s) 300
BstSLI GKGCMC 2 cut(s) 382, 575
BstV1I GCAGC 4 cut(s) 282, 285, 667, 712
BstV2I GAAGAC 2 cut(s) 152, 470
BstZI CGGCCG 1 cut(s) 146
BsuI GTATCC 1 cut(s) 400
BsuRI GGCC 5 cut(s) 144, 148, 526, 573, 627
BtrI CACGTC 1 cut(s) 198
BtsCI GGATG 3 cut(s) 169, 286, 313
BtsI GCAGTG 1 cut(s) 750
BtsIMutI CAGTG 4 cut(s) 173, 390, 588, 750
Cac8I GCNNGC 3 cut(s) 70, 146, 730
Cfr10I RCCGGY 1 cut(s) 144
Cfr13I GGNCC 2 cut(s) 571, 572
Csp6I GTAC 3 cut(s) 57, 63, 297
CspCI CAANNNNNGTGG 2 cut(s) 564, 599
CviAII CATG 4 cut(s) 60, 425, 729, 733
CviQI GTAC 3 cut(s) 57, 63, 297
DdeI CTNAG 1 cut(s) 360
DpnI GATC 3 cut(s) 237, 685, 782
DpnII GATC 3 cut(s) 235, 683, 780
DraIII CACNNNGTG 1 cut(s) 669
DriI GACNNNNNGTC 1 cut(s) 156
EaeI YGGCCR 3 cut(s) 142, 146, 625
EagI CGGCCG 1 cut(s) 146
Eam1105I GACNNNNNGTC 1 cut(s) 156
Ecl136II GAGCTC 1 cut(s) 368
EclXI CGGCCG 1 cut(s) 146
Eco24I GRGCYC 2 cut(s) 370, 575
Eco52I CGGCCG 1 cut(s) 146
Eco53kI GAGCTC 1 cut(s) 368
EcoICRI GAGCTC 1 cut(s) 368
EcoO109I RGGNCCY 1 cut(s) 571
EcoRII CCWGG 2 cut(s) 402, 526
EcoT22I ATGCAT 1 cut(s) 734
EcoT38I GRGCYC 2 cut(s) 370, 575
FaeI CATG 4 cut(s) 63, 428, 732, 736
FaqI GGGAC 1 cut(s) 595
FatI CATG 4 cut(s) 59, 424, 728, 732
FauI CCCGC 1 cut(s) 269
FbaI TGATCA 2 cut(s) 235, 780
Fnu4HI GCNGC 4 cut(s) 271, 274, 656, 726
FokI GGATG 3 cut(s) 156, 293, 320
FriOI GRGCYC 2 cut(s) 370, 575
FseI GGCCGGCC 1 cut(s) 148
Fsp4HI GCNGC 4 cut(s) 271, 274, 656, 726
FspBI CTAG 1 cut(s) 201
GluI GCNGC 4 cut(s) 271, 274, 656, 726
HaeIII GGCC 5 cut(s) 144, 148, 526, 573, 627
HapII CCGG 3 cut(s) 145, 184, 213
Hin1II CATG 4 cut(s) 63, 428, 732, 736
HincII GTYRAC 1 cut(s) 104
HindII GTYRAC 1 cut(s) 104
HindIII AAGCTT 1 cut(s) 791
HinfI GANTC 2 cut(s) 344, 452
HpaII CCGG 3 cut(s) 145, 184, 213
HphI GGTGA 2 cut(s) 544, 775
Hpy166II GTNNAC 2 cut(s) 104, 672
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 3 cut(s) 201, 371, 664
Hpy8I GTNNAC 2 cut(s) 104, 672
HpyAV CCTTC 1 cut(s) 551
HpyCH4III ACNGT 4 cut(s) 154, 177, 394, 583
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 6 cut(s) 128, 302, 714, 728, 732, 743
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
HpyF3I CTNAG 1 cut(s) 360
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 4 cut(s) 63, 428, 732, 736
KroI GCCGGC 1 cut(s) 144
KroNI GCCGGC 1 cut(s) 146
Ksp22I TGATCA 2 cut(s) 235, 780
Kzo9I GATC 3 cut(s) 235, 683, 780
LmnI GCTCC 2 cut(s) 365, 678
Lsp1109I GCAGC 4 cut(s) 282, 285, 667, 712
MaeI CTAG 1 cut(s) 201
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 773
MalI GATC 3 cut(s) 237, 685, 782
MboI GATC 3 cut(s) 235, 683, 780
MboII GAAGA 5 cut(s) 152, 410, 413, 475, 599
MhlI GDGCHC 3 cut(s) 370, 382, 575
MlsI TGGCCA 1 cut(s) 627
MluCI AATT 3 cut(s) 469, 764, 802
MluNI TGGCCA 1 cut(s) 627
MlyI GAGTC 1 cut(s) 446
MmeI TCCRAC 1 cut(s) 105
Mox20I TGGCCA 1 cut(s) 627
Mph1103I ATGCAT 1 cut(s) 734
MroNI GCCGGC 1 cut(s) 144
MroXI GAANNNNTTC 1 cut(s) 489
MscI TGGCCA 1 cut(s) 627
Msp20I TGGCCA 1 cut(s) 627
MspA1I CMGCKG 1 cut(s) 276
MspI CCGG 3 cut(s) 145, 184, 213
MspR9I CCNGG 2 cut(s) 404, 528
Mva1269I GAATGC 1 cut(s) 714
MvaI CCWGG 2 cut(s) 404, 528
MwoI GCNNNNNNNGC 1 cut(s) 365
NaeI GCCGGC 1 cut(s) 146
NdeII GATC 3 cut(s) 235, 683, 780
NgoMIV GCCGGC 1 cut(s) 144
NlaIII CATG 4 cut(s) 63, 428, 732, 736
NlaIV GGNNCC 3 cut(s) 24, 572, 573
NsiI ATGCAT 1 cut(s) 734
NspI RCATGY 2 cut(s) 63, 732
PaeI GCATGC 1 cut(s) 732
PciI ACATGT 1 cut(s) 59
PcsI WCGNNNNNNNCGW 2 cut(s) 194, 671
PctI GAATGC 1 cut(s) 714
PdiI GCCGGC 1 cut(s) 146
PdmI GAANNNNTTC 1 cut(s) 489
PfeI GAWTC 1 cut(s) 344
PkrI GCNGC 4 cut(s) 272, 275, 657, 727
PleI GAGTC 1 cut(s) 446
PpsI GAGTC 1 cut(s) 446
PscI ACATGT 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 370
Psp6I CCWGG 2 cut(s) 402, 526
PspGI CCWGG 2 cut(s) 402, 526
PspN4I GGNNCC 3 cut(s) 24, 572, 573
PspOMI GGGCCC 1 cut(s) 571
PspPI GGNCC 2 cut(s) 571, 572
PstI CTGCAG 1 cut(s) 304
RigI GGCCGGCC 1 cut(s) 148
RsaI GTAC 3 cut(s) 58, 64, 298
RsaNI GTAC 3 cut(s) 57, 63, 297
SacI GAGCTC 1 cut(s) 370
SatI GCNGC 4 cut(s) 271, 274, 656, 726
Sau3AI GATC 3 cut(s) 235, 683, 780
Sau96I GGNCC 2 cut(s) 571, 572
ScaI AGTACT 1 cut(s) 298
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 2 cut(s) 404, 528
SduI GDGCHC 3 cut(s) 370, 382, 575
SfcI CTRYAG 1 cut(s) 300
SmlI CTYRAG 1 cut(s) 289
SmoI CTYRAG 1 cut(s) 289
SphI GCATGC 1 cut(s) 732
Sse9I AATT 3 cut(s) 469, 764, 802
SsiI CCGC 1 cut(s) 276
SspI AATATT 1 cut(s) 98
SspMI CTAG 1 cut(s) 201
SstI GAGCTC 1 cut(s) 370
StyD4I CCNGG 2 cut(s) 402, 526
TaaI ACNGT 4 cut(s) 154, 177, 394, 583
TaiI ACGT 1 cut(s) 200
TaqI TCGA 3 cut(s) 188, 372, 644
TasI AATT 3 cut(s) 469, 764, 802
TatI WGTACW 3 cut(s) 56, 62, 296
TfiI GAWTC 1 cut(s) 344
TscAI CASTG 4 cut(s) 180, 397, 588, 750
TseI GCWGC 4 cut(s) 270, 273, 655, 725
TspDTI ATGAA 2 cut(s) 413, 515
TspRI CASTG 4 cut(s) 180, 397, 588, 750
XapI RAATTY 1 cut(s) 802
XbaI TCTAGA 1 cut(s) 200
XceI RCATGY 2 cut(s) 63, 732
XmnI GAANNNNTTC 1 cut(s) 489
XspI CTAG 1 cut(s) 201
ZrmI AGTACT 1 cut(s) 298
Zsp2I ATGCAT 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.