Rorug06G0458700

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003407
Physical Location & Seq
Reverse (-)
58563245 .. 58563685
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0458700.1

Sequence Viewer

Length: 318 bp
ATGACAAAAGAGTATGTGCACATTCGTATACAGCAACGAAATGGCAGGAAAAGCCTGACAACAGTGCAGGGACTGAAGAAGGAATTTAGCTACAACAAGACTCTCAAAGACCTTAAGAAGGAATTTTGCTGCAGTGGTACAGTTGTCCAGGACCCAGAACAAGGCCAAGTGATTGAACTTCAAGGTGATCAGCGAAAGAATGTGTTTGCCTTCTTAGTTCAGGTTGGCATTGTGAAGAAGGATAACATCAAAAGTCACGGTAACTGTGTGATGCACCATGAATATGCTACTGGAATGTATGACAACTTTCTATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

105

Amino Acids

12.1

Weight (kDa)

9.2

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUI1 PF01253 3 - 77 2.5e-26 Translation initiation factor SUI1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 28
AcsI RAATTY 2 cut(s) 83, 122
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 1 cut(s) 139
AfiI CCNNNNNNNGG 2 cut(s) 118, 161
AflII CTTAAG 1 cut(s) 113
AgsI TTSAA 2 cut(s) 176, 182
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw21I GWGCWC 1 cut(s) 21
Alw44I GTGCAC 1 cut(s) 17
AlwNI CAGNNNCTG 1 cut(s) 73
AoxI GGCC 1 cut(s) 163
ApaLI GTGCAC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 129
ApoI RAATTY 2 cut(s) 83, 122
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 197
AvaII GGWCC 1 cut(s) 151
BaeGI GKGCMC 1 cut(s) 21
BaeI ACNNNNGTAYC 2 cut(s) 129, 162
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 149
BclI TGATCA 1 cut(s) 187
BfmI CTRYAG 1 cut(s) 130
BfrI CTTAAG 1 cut(s) 113
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 261
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 161
Bse1I ACTGG 1 cut(s) 295
BseBI CCWGG 1 cut(s) 149
BseLI CCNNNNNNNGG 2 cut(s) 118, 161
BseNI ACTGG 1 cut(s) 295
BseSI GKGCMC 1 cut(s) 21
BseXI GCAGC 1 cut(s) 116
BsgI GTGCAG 1 cut(s) 86
BshFI GGCC 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 21
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 2 cut(s) 118, 161
BsmFI GGGAC 1 cut(s) 84
BsnI GGCC 1 cut(s) 165
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 1 cut(s) 187
BspANI GGCC 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 153
BspMAI CTGCAG 1 cut(s) 134
BspTI CTTAAG 1 cut(s) 113
BsrI ACTGG 1 cut(s) 295
BssMI GATC 1 cut(s) 187
BssNAI GTATAC 1 cut(s) 29
Bst1107I GTATAC 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 4 cut(s) 64, 142, 260, 266
BstAFI CTTAAG 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 214
BstENI CCTNNNNNAGG 1 cut(s) 116
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 51
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstSFI CTRYAG 1 cut(s) 130
BstSLI GKGCMC 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 116
BstZ17I GTATAC 1 cut(s) 29
BsuRI GGCC 1 cut(s) 165
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 2 cut(s) 69, 139
CaiI CAGNNNCTG 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 138
CviAII CATG 1 cut(s) 278
CviJI RGCY 3 cut(s) 54, 90, 165
CviKI_1 RGCY 3 cut(s) 54, 90, 165
CviQI GTAC 1 cut(s) 138
DdeI CTNAG 1 cut(s) 214
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
Eco47I GGWCC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 95
EcoNI CCTNNNNNAGG 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 147
FaeI CATG 1 cut(s) 281
FaiI YATR 5 cut(s) 15, 29, 279, 285, 300
FaqI GGGAC 1 cut(s) 84
FatI CATG 1 cut(s) 277
FbaI TGATCA 1 cut(s) 187
FblI GTMKAC 1 cut(s) 28
Fnu4HI GCNGC 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 130
GluI GCNGC 1 cut(s) 130
HaeIII GGCC 1 cut(s) 165
Hin1II CATG 1 cut(s) 281
HinfI GANTC 1 cut(s) 100
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 2 cut(s) 19, 29
Hpy8I GTNNAC 2 cut(s) 19, 29
HpyAV CCTTC 4 cut(s) 73, 112, 220, 232
HpyCH4III ACNGT 4 cut(s) 64, 142, 260, 266
HpyCH4V TGCA 4 cut(s) 19, 67, 132, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 51
HpyF3I CTNAG 1 cut(s) 214
Hsp92II CATG 1 cut(s) 281
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 1 cut(s) 187
LpnPI CCDG 8 cut(s) 31, 53, 68, 134, 161, 168, 206, 276
Lsp1109I GCAGC 1 cut(s) 116
LweI GCATC 1 cut(s) 261
MaeIII GTNAC 2 cut(s) 254, 260
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 2 cut(s) 88, 247
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 2 cut(s) 83, 122
MlyI GAGTC 1 cut(s) 94
MseI TTAA 2 cut(s) 114, 316
MslI CAYNNNNRTG 1 cut(s) 282
MspCI CTTAAG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 51
NdeII GATC 1 cut(s) 187
NlaIII CATG 1 cut(s) 281
NlaIV GGNNCC 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 254
PfoI TCCNGGA 1 cut(s) 147
PkrI GCNGC 1 cut(s) 131
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PpuMI RGGWCCY 1 cut(s) 151
Psp5II RGGWCCY 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 151
PspPPI RGGWCCY 1 cut(s) 151
PstI CTGCAG 1 cut(s) 134
PstNI CAGNNNCTG 1 cut(s) 73
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
RseI CAYNNNNRTG 1 cut(s) 282
SaqAI TTAA 2 cut(s) 114, 316
SatI GCNGC 1 cut(s) 130
Sau3AI GATC 1 cut(s) 187
Sau96I GGNCC 1 cut(s) 151
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 1 cut(s) 21
SetI ASST 4 cut(s) 92, 114, 187, 225
SfaNI GCATC 1 cut(s) 261
SfcI CTRYAG 1 cut(s) 130
SinI GGWCC 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 2 cut(s) 83, 122
StyD4I CCNGG 1 cut(s) 147
TaaI ACNGT 4 cut(s) 64, 142, 260, 266
TasI AATT 2 cut(s) 83, 122
Tru1I TTAA 2 cut(s) 114, 316
Tru9I TTAA 2 cut(s) 114, 316
TscAI CASTG 2 cut(s) 69, 139
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 1 cut(s) 129
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 294
TspRI CASTG 2 cut(s) 69, 139
Vha464I CTTAAG 1 cut(s) 113
VneI GTGCAC 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 151
XagI CCTNNNNNAGG 1 cut(s) 116
XapI RAATTY 2 cut(s) 83, 122
XmiI GTMKAC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.