AT2G03720

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003407
Physical Location & Seq
Forward (+)
1132120 .. 1133379
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G03720.2

Sequence Viewer

Length: 498 bp
ATGGTTGTTGTGGACACAACTTCACAAACTAAGAATGCTCTTCAATGGGCTTTAACACATTGTGTTCAAGATGAAGATAATATCACTCTTCTCCATGTCACAAGAACACCCGTAGGACAAGCTATAGATGAGACACAAAGGGAGAGAAACTCAAGGGCTCATGAACTAGTTCATCCATTGAAGAATTTTTGTCAACTCAAGAAACCTAACGTCAAAACGGAGATAGTGGTGGTTGAAACGGCGGAGGAGAAAGGTAAGACGATAGTGGAGGAATCAAAGAAACAAGGAGCAGGCGTTTTGGTGTTAGGGCAGAGAAAGAGAACCTCGAAGTGGCGCGTGATTTGGAAATGGCGTACGAAGGGAGGAATGGGAGGAGGAGTGGTCGAGTATTGTATTCATAACTCCGATTGTATGGCTATTGCCGTAAGGAAGAAGAGTAACAATGGAGGTTACTTGATCACCACGAAACGTCACAAAGATTTCTGGCTCTTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

165

Amino Acids

18.69

Weight (kDa)

9.63

Isoelectric Point (pI)

31.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 65 - 210 7.5e-14 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 336
AciI CCGC 1 cut(s) 242
AcsI RAATTY 1 cut(s) 184
AdeI CACNNNGTG 1 cut(s) 62
AfaI GTAC 1 cut(s) 355
AfiI CCNNNNNNNGG 1 cut(s) 330
AgsI TTSAA 4 cut(s) 44, 68, 181, 236
AhlI ACTAGT 1 cut(s) 166
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
Alw26I GTCTC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 184
Asp700I GAANNNNTTC 1 cut(s) 168
AspLEI GCGC 1 cut(s) 336
AsuHPI GGTGA 1 cut(s) 451
BanII GRGCYC 1 cut(s) 160
BceAI ACGGC 2 cut(s) 255, 407
BclI TGATCA 1 cut(s) 456
BcoDI GTCTC 1 cut(s) 125
BcuI ACTAGT 1 cut(s) 166
BfaI CTAG 1 cut(s) 167
BfmI CTRYAG 1 cut(s) 123
BplI GAGNNNNNCTC 2 cut(s) 134, 166
BpuEI CTTGAG 2 cut(s) 136, 182
BsaXI ACNNNNNCTCC 6 cut(s) 279, 309, 363, 366, 393, 396
Bsc4I CCNNNNNNNGG 1 cut(s) 330
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 330
BseRI GAGGAG 3 cut(s) 260, 387, 390
Bsh1236I CGCG 1 cut(s) 336
BsiWI CGTACG 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 330
BsmAI GTCTC 1 cut(s) 125
BsmI GAATGC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 1 cut(s) 456
BspACI CCGC 1 cut(s) 242
BspFNI CGCG 1 cut(s) 336
BspHI TCATGA 1 cut(s) 160
BspQI GCTCTTC 1 cut(s) 45
BssMI GATC 1 cut(s) 456
Bst6I CTCTTC 3 cut(s) 45, 93, 428
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 172
BstFNI CGCG 1 cut(s) 336
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 1 cut(s) 459
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 1 cut(s) 456
BstSFI CTRYAG 1 cut(s) 123
BstUI CGCG 1 cut(s) 336
BtsCI GGATG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 292
CciI TCATGA 1 cut(s) 160
CfoI GCGC 1 cut(s) 336
Csp6I GTAC 1 cut(s) 354
CviAII CATG 2 cut(s) 95, 161
CviJI RGCY 6 cut(s) 50, 122, 158, 416, 487, 494
CviKI_1 RGCY 6 cut(s) 50, 122, 158, 416, 487, 494
CviQI GTAC 1 cut(s) 354
DdeI CTNAG 1 cut(s) 30
DpnI GATC 1 cut(s) 458
DpnII GATC 1 cut(s) 456
DraIII CACNNNGTG 1 cut(s) 62
Eam1104I CTCTTC 3 cut(s) 45, 93, 428
EarI CTCTTC 3 cut(s) 45, 93, 428
EciI GGCGGA 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 160
FaeI CATG 2 cut(s) 98, 164
FaiI YATR 5 cut(s) 96, 125, 162, 399, 413
FatI CATG 2 cut(s) 94, 160
FbaI TGATCA 1 cut(s) 456
FokI GGATG 1 cut(s) 159
FriOI GRGCYC 1 cut(s) 160
FspBI CTAG 1 cut(s) 167
GlaI GCGC 1 cut(s) 335
HhaI GCGC 1 cut(s) 336
Hin1II CATG 2 cut(s) 98, 164
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HincII GTYRAC 1 cut(s) 194
HindII GTYRAC 1 cut(s) 194
HinfI GANTC 1 cut(s) 272
HphI GGTGA 1 cut(s) 451
Hpy166II GTNNAC 2 cut(s) 13, 194
Hpy188I TCNGA 1 cut(s) 406
Hpy188III TCNNGA 3 cut(s) 68, 161, 199
Hpy8I GTNNAC 2 cut(s) 13, 194
HpyAV CCTTC 1 cut(s) 352
HpyCH4IV ACGT 2 cut(s) 210, 469
HpyF3I CTNAG 1 cut(s) 30
HpySE526I ACGT 2 cut(s) 210, 469
Hsp92II CATG 2 cut(s) 98, 164
HspAI GCGC 1 cut(s) 334
Ksp22I TGATCA 1 cut(s) 456
Kzo9I GATC 1 cut(s) 456
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 2 cut(s) 276, 469
MaeI CTAG 1 cut(s) 167
MaeII ACGT 2 cut(s) 210, 469
MaeIII GTNAC 4 cut(s) 97, 437, 449, 470
MalI GATC 1 cut(s) 458
MboI GATC 1 cut(s) 456
MboII GAAGA 6 cut(s) 32, 80, 86, 193, 442, 445
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 1 cut(s) 184
MnlI CCTC 7 cut(s) 238, 262, 334, 356, 365, 368, 440
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 2 cut(s) 53, 496
Mva1269I GAATGC 1 cut(s) 40
MvnI CGCG 1 cut(s) 336
NdeII GATC 1 cut(s) 456
NlaIII CATG 2 cut(s) 98, 164
NmuCI GTSAC 2 cut(s) 97, 470
PagI TCATGA 1 cut(s) 160
PciSI GCTCTTC 1 cut(s) 45
PctI GAATGC 1 cut(s) 40
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 1 cut(s) 272
Pfl23II CGTACG 1 cut(s) 353
PspLI CGTACG 1 cut(s) 353
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 2 cut(s) 53, 496
Sau3AI GATC 1 cut(s) 456
SduI GDGCHC 1 cut(s) 160
SetI ASST 7 cut(s) 124, 208, 213, 256, 326, 451, 472
SfcI CTRYAG 1 cut(s) 123
SmlI CTYRAG 2 cut(s) 151, 197
SmoI CTYRAG 2 cut(s) 151, 197
SpeI ACTAGT 1 cut(s) 166
Sse9I AATT 1 cut(s) 184
SsiI CCGC 1 cut(s) 242
SspMI CTAG 1 cut(s) 167
TaiI ACGT 2 cut(s) 213, 472
TaqI TCGA 2 cut(s) 326, 384
TasI AATT 1 cut(s) 184
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 2 cut(s) 53, 496
Tru9I TTAA 2 cut(s) 53, 496
TseFI GTSAC 2 cut(s) 97, 470
Tsp45I GTSAC 2 cut(s) 97, 470
TspDTI ATGAA 4 cut(s) 87, 161, 177, 386
TspGWI ACGGA 1 cut(s) 233
XapI RAATTY 1 cut(s) 184
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.