pycom06g18280

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0003407
Physical Location & Seq
Forward (+)
22114143 .. 22115512
1370 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g18280.1

Sequence Viewer

Length: 828 bp
ATGCCCTTGAAAAAACAAAAGGTTAATTCCAAGTCTAGGCCTAATTATTTGTATATATATACATGCATAGCCAGCCATTTTTCCCACCGGCAAAACCAATATTATCAACAAATGAGCAGGAAATATGCAAGACTGTGTGGTGCCCGGCCGACTGTTTGTCTTCCAATCCTTTCACTGTCTCACAGGTCGAAACGCAAGTCTAGACGGCGTTCCGGTTCCGTCGAAGCTACTACTGATCATAACAGCACAAAGTTCTTGAAGAATATTAGCAGCAGGGGGGATGACGACTTGGGTAGTAATGCAGAAGATGTGAAAAATGGGAACAAGATAATGGTTGTTGTTGATTCAAGCCTTGAAGCTAAGGGAGCTCTCGAATGGGCACTATCCCACACTGTCCAATCCCAGGACACCATTGTTCTTCTTCATGTAGCTAAACCCTCCAAACAAGAAGGTGCAGACTCAAATGGGAGCACTAATTTAAGGGATTTTGAACTGCTTCGCTCGATGAAAAATGTGTGCCAAAGGAAAAGGCCTGGGGTGGAAGTGGAGGTAGCATTGCTTGAAGGGAAAGAAAAGGGCCCAATAATAGTGGAAGAAGCTAAGAGACAAATGGTGTCCCTACTTGTTCTTGGCCAAAAAAGAAAGAGGTCGACGTGGTGGCAGCTAATCAAGAGGTGGACAAGGAGCAGATCATCAGGGGAGGTTTTTGTGGAATACTGCATTCAAAATTCTGCATGCATGACGATTGCTGTGAGGAGAAAGAGCAAGAAATTGGGAGGTTACTTAATCACCACTAAGCTTCACAAGAATTTCTGGCTTCTAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

276

Amino Acids

31.33

Weight (kDa)

10.13

Isoelectric Point (pI)

55.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 109 - 252 3.1e-15 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 650
AcoI YGGCCR 2 cut(s) 146, 631
AcsI RAATTY 2 cut(s) 727, 808
AfiI CCNNNNNNNGG 2 cut(s) 36, 403
AgsI TTSAA 7 cut(s) 10, 259, 348, 356, 491, 563, 725
AhdI GACNNNNNGTC 1 cut(s) 156
AjiI CACGTC 1 cut(s) 654
AjnI CCWGG 2 cut(s) 402, 532
AluBI AGCT 8 cut(s) 227, 359, 368, 431, 599, 664, 799, 824
AluI AGCT 8 cut(s) 227, 359, 368, 431, 599, 664, 799, 824
Alw21I GWGCWC 2 cut(s) 370, 473
Alw26I GTCTC 2 cut(s) 183, 598
AoxI GGCC 5 cut(s) 38, 146, 530, 577, 631
ApaI GGGCCC 1 cut(s) 581
ApeKI GCWGC 2 cut(s) 270, 661
ApoI RAATTY 2 cut(s) 727, 808
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
Asp700I GAANNNNTTC 1 cut(s) 495
AspS9I GGNCC 2 cut(s) 577, 578
AsuC2I CCSGG 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 781
BaeGI GKGCMC 3 cut(s) 145, 382, 581
BalI TGGCCA 1 cut(s) 633
BanI GGYRCC 1 cut(s) 140
BanII GRGCYC 2 cut(s) 370, 581
BbsI GAAGAC 1 cut(s) 152
Bbv12I GWGCWC 2 cut(s) 370, 473
BbvI GCAGC 2 cut(s) 282, 673
BceAI ACGGC 1 cut(s) 221
BciT130I CCWGG 2 cut(s) 404, 534
BclI TGATCA 1 cut(s) 235
BcnI CCSGG 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 183, 598
BfaI CTAG 3 cut(s) 36, 201, 821
BisI GCNGC 2 cut(s) 271, 662
BlsI GCNGC 2 cut(s) 272, 663
Bme1390I CCNGG 3 cut(s) 145, 404, 534
BmeRI GACNNNNNGTC 1 cut(s) 156
BmgBI CACGTC 1 cut(s) 654
BmgT120I GGNCC 2 cut(s) 577, 578
BmiI GGNNCC 3 cut(s) 142, 217, 579
BmrFI CCNGG 3 cut(s) 145, 404, 534
BpiI GAAGAC 1 cut(s) 152
Bpu10I CCTNAGC 1 cut(s) 360
BpuMI CCSGG 1 cut(s) 145
BsaJI CCNNGG 2 cut(s) 402, 533
BsaWI WCCGGW 1 cut(s) 212
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 403
Bse118I RCCGGY 1 cut(s) 87
Bse3DI GCAATG 1 cut(s) 554
BseBI CCWGG 2 cut(s) 404, 534
BseDI CCNNGG 2 cut(s) 402, 533
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 2 cut(s) 36, 403
BseMI GCAATG 1 cut(s) 554
BseRI GAGGAG 1 cut(s) 769
BseSI GKGCMC 3 cut(s) 145, 382, 581
BseX3I CGGCCG 1 cut(s) 146
BseXI GCAGC 2 cut(s) 282, 673
BsgI GTGCAG 1 cut(s) 474
Bsh1285I CGRYCG 1 cut(s) 149
BshFI GGCC 5 cut(s) 40, 148, 532, 579, 633
BshNI GGYRCC 1 cut(s) 140
BsiEI CGRYCG 1 cut(s) 149
BsiHKAI GWGCWC 2 cut(s) 370, 473
BsiSI CCGG 3 cut(s) 88, 145, 213
BslFI GGGAC 1 cut(s) 601
BslI CCNNNNNNNGG 2 cut(s) 36, 403
BsmAI GTCTC 2 cut(s) 183, 598
BsmFI GGGAC 1 cut(s) 601
BsmI GAATGC 1 cut(s) 720
BsnI GGCC 5 cut(s) 40, 148, 532, 579, 633
Bsp120I GGGCCC 1 cut(s) 577
Bsp1286I GDGCHC 5 cut(s) 145, 370, 382, 473, 581
Bsp143I GATC 2 cut(s) 235, 689
BspANI GGCC 5 cut(s) 40, 148, 532, 579, 633
BspLI GGNNCC 3 cut(s) 142, 217, 579
BspT107I GGYRCC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 554
BsrFI RCCGGY 1 cut(s) 87
BssAI RCCGGY 1 cut(s) 87
BssECI CCNNGG 2 cut(s) 402, 533
BssMI GATC 2 cut(s) 235, 689
Bst2UI CCWGG 2 cut(s) 404, 534
Bst4CI ACNGT 4 cut(s) 135, 154, 177, 394
BstC8I GCNNGC 2 cut(s) 73, 736
BstDEI CTNAG 3 cut(s) 360, 600, 795
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 2 cut(s) 238, 692
BstMAI GTCTC 2 cut(s) 183, 598
BstMBI GATC 2 cut(s) 235, 689
BstMCI CGRYCG 1 cut(s) 149
BstMWI GCNNNNNNNGC 2 cut(s) 72, 365
BstNI CCWGG 2 cut(s) 404, 534
BstNSI RCATGY 2 cut(s) 66, 738
BstSCI CCNGG 3 cut(s) 143, 402, 532
BstSLI GKGCMC 3 cut(s) 145, 382, 581
BstV1I GCAGC 2 cut(s) 282, 673
BstV2I GAAGAC 1 cut(s) 152
BstZI CGGCCG 1 cut(s) 146
BsuRI GGCC 5 cut(s) 40, 148, 532, 579, 633
BtrI CACGTC 1 cut(s) 654
BtsCI GGATG 1 cut(s) 286
BtsIMutI CAGTG 2 cut(s) 173, 390
Cac8I GCNNGC 2 cut(s) 73, 736
Cfr10I RCCGGY 1 cut(s) 87
Cfr13I GGNCC 2 cut(s) 577, 578
CspCI CAANNNNNGTGG 2 cut(s) 570, 605
CviAII CATG 4 cut(s) 63, 425, 735, 739
DdeI CTNAG 3 cut(s) 360, 600, 795
DpnI GATC 2 cut(s) 237, 691
DpnII GATC 2 cut(s) 235, 689
DriI GACNNNNNGTC 1 cut(s) 156
EaeI YGGCCR 2 cut(s) 146, 631
EagI CGGCCG 1 cut(s) 146
Eam1105I GACNNNNNGTC 1 cut(s) 156
Ecl136II GAGCTC 1 cut(s) 368
EclXI CGGCCG 1 cut(s) 146
Eco147I AGGCCT 2 cut(s) 40, 532
Eco24I GRGCYC 2 cut(s) 370, 581
Eco52I CGGCCG 1 cut(s) 146
Eco53kI GAGCTC 1 cut(s) 368
EcoICRI GAGCTC 1 cut(s) 368
EcoO109I RGGNCCY 1 cut(s) 577
EcoRII CCWGG 2 cut(s) 402, 532
EcoT22I ATGCAT 2 cut(s) 68, 740
EcoT38I GRGCYC 2 cut(s) 370, 581
FaeI CATG 4 cut(s) 66, 428, 738, 742
FaqI GGGAC 1 cut(s) 601
FatI CATG 4 cut(s) 62, 424, 734, 738
FbaI TGATCA 1 cut(s) 235
FblI GTMKAC 1 cut(s) 650
Fnu4HI GCNGC 2 cut(s) 271, 662
FokI GGATG 1 cut(s) 293
FriOI GRGCYC 2 cut(s) 370, 581
Fsp4HI GCNGC 2 cut(s) 271, 662
FspBI CTAG 3 cut(s) 36, 201, 821
GluI GCNGC 2 cut(s) 271, 662
HaeIII GGCC 5 cut(s) 40, 148, 532, 579, 633
HapII CCGG 3 cut(s) 88, 145, 213
Hin1II CATG 4 cut(s) 66, 428, 738, 742
HincII GTYRAC 1 cut(s) 651
HindII GTYRAC 1 cut(s) 651
HindIII AAGCTT 1 cut(s) 797
HinfI GANTC 2 cut(s) 344, 458
HpaII CCGG 3 cut(s) 88, 145, 213
HphI GGTGA 1 cut(s) 781
Hpy166II GTNNAC 2 cut(s) 651, 678
Hpy188III TCNNGA 4 cut(s) 201, 256, 371, 670
Hpy8I GTNNAC 2 cut(s) 651, 678
Hpy99I CGWCG 2 cut(s) 224, 655
HpyAV CCTTC 2 cut(s) 443, 557
HpyCH4III ACNGT 4 cut(s) 135, 154, 177, 394
HpyCH4IV ACGT 1 cut(s) 653
HpyCH4V TGCA 7 cut(s) 66, 128, 302, 455, 720, 734, 738
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 365
HpyF3I CTNAG 3 cut(s) 360, 600, 795
HpySE526I ACGT 1 cut(s) 653
Hsp92II CATG 4 cut(s) 66, 428, 738, 742
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 2 cut(s) 235, 689
LmnI GCTCC 3 cut(s) 365, 468, 684
Lsp1109I GCAGC 2 cut(s) 282, 673
MaeI CTAG 3 cut(s) 36, 201, 821
MaeII ACGT 1 cut(s) 653
MaeIII GTNAC 1 cut(s) 779
MalI GATC 2 cut(s) 237, 691
MboI GATC 2 cut(s) 235, 689
MboII GAAGA 6 cut(s) 152, 271, 317, 410, 413, 605
MhlI GDGCHC 5 cut(s) 145, 370, 382, 473, 581
MlsI TGGCCA 1 cut(s) 633
MluCI AATT 6 cut(s) 25, 43, 475, 727, 770, 808
MluNI TGGCCA 1 cut(s) 633
MlyI GAGTC 1 cut(s) 452
MnlI CCTC 7 cut(s) 448, 541, 639, 666, 694, 747, 770
Mox20I TGGCCA 1 cut(s) 633
Mph1103I ATGCAT 2 cut(s) 68, 740
MroXI GAANNNNTTC 1 cut(s) 495
MscI TGGCCA 1 cut(s) 633
MseI TTAA 3 cut(s) 24, 479, 785
Msp20I TGGCCA 1 cut(s) 633
MspI CCGG 3 cut(s) 88, 145, 213
MspR9I CCNGG 3 cut(s) 145, 404, 534
Mva1269I GAATGC 1 cut(s) 720
MvaI CCWGG 2 cut(s) 404, 534
MwoI GCNNNNNNNGC 2 cut(s) 72, 365
NciI CCSGG 1 cut(s) 145
NdeII GATC 2 cut(s) 235, 689
NlaIII CATG 4 cut(s) 66, 428, 738, 742
NlaIV GGNNCC 3 cut(s) 142, 217, 579
NsiI ATGCAT 2 cut(s) 68, 740
NspI RCATGY 2 cut(s) 66, 738
PaeI GCATGC 1 cut(s) 738
PceI AGGCCT 2 cut(s) 40, 532
PctI GAATGC 1 cut(s) 720
PdmI GAANNNNTTC 1 cut(s) 495
PfeI GAWTC 1 cut(s) 344
PkrI GCNGC 2 cut(s) 272, 663
PleI GAGTC 1 cut(s) 452
PpsI GAGTC 1 cut(s) 452
Psp124BI GAGCTC 1 cut(s) 370
Psp6I CCWGG 2 cut(s) 402, 532
PspGI CCWGG 2 cut(s) 402, 532
PspN4I GGNNCC 3 cut(s) 142, 217, 579
PspOMI GGGCCC 1 cut(s) 577
PspPI GGNCC 2 cut(s) 577, 578
SacI GAGCTC 1 cut(s) 370
SalI GTCGAC 1 cut(s) 649
SaqAI TTAA 3 cut(s) 24, 479, 785
SatI GCNGC 2 cut(s) 271, 662
Sau3AI GATC 2 cut(s) 235, 689
Sau96I GGNCC 2 cut(s) 577, 578
SchI GAGTC 1 cut(s) 452
ScrFI CCNGG 3 cut(s) 145, 404, 534
SduI GDGCHC 5 cut(s) 145, 370, 382, 473, 581
SphI GCATGC 1 cut(s) 738
Sse9I AATT 6 cut(s) 25, 43, 475, 727, 770, 808
SseBI AGGCCT 2 cut(s) 40, 532
SspI AATATT 2 cut(s) 101, 265
SspMI CTAG 3 cut(s) 36, 201, 821
SstI GAGCTC 1 cut(s) 370
StuI AGGCCT 2 cut(s) 40, 532
StyD4I CCNGG 3 cut(s) 143, 402, 532
TaaI ACNGT 4 cut(s) 135, 154, 177, 394
TaiI ACGT 1 cut(s) 656
TaqI TCGA 5 cut(s) 188, 222, 372, 503, 650
TasI AATT 6 cut(s) 25, 43, 475, 727, 770, 808
TfiI GAWTC 1 cut(s) 344
Tru1I TTAA 3 cut(s) 24, 479, 785
Tru9I TTAA 3 cut(s) 24, 479, 785
TscAI CASTG 2 cut(s) 180, 397
TseI GCWGC 2 cut(s) 270, 661
TspDTI ATGAA 2 cut(s) 413, 521
TspGWI ACGGA 1 cut(s) 208
TspRI CASTG 2 cut(s) 180, 397
XapI RAATTY 2 cut(s) 727, 808
XbaI TCTAGA 1 cut(s) 200
XceI RCATGY 2 cut(s) 66, 738
XmiI GTMKAC 1 cut(s) 650
XmnI GAANNNNTTC 1 cut(s) 495
XspI CTAG 3 cut(s) 36, 201, 821
Zsp2I ATGCAT 2 cut(s) 68, 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.