Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003407

Physical Location & Seq

Genomic Coordinates Reverse (-)

3281518 .. 3282858

Gene Structure 1341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCCACATAGCCTTGCATGGCCCTACAGCTTCATGAGAAGCACGTTCAGAAATACAGAAATAAAATTAACACCATGGCCCCCAGACCAACATCTAGAAATTTGTTCAGCTTCAGTCCTCTTTATATATATAAGAATTATAGGCATCTCAAAGCCATTGAGTTTCATCTCAGGAAAAATGGGGAAAATAGGCACAAAATTGCCTAATTTCTGCCTAAACAGGATTAGGCCACACGTGAGGGTTCGTTCACCACCGATACAGTCCAAGCCAGATGTTTCAGATGTCGCTAAAAAAAGTAGTGATGGAAAATTTGAGGATTCTGGGAATGTTGGAGAAGAAGAGAAAGTGAAAGCAGCTGGTGGTGGTGGTGATGAGAACCCTAAAAAAGCTGGGTTGATAATAGCTCGGAAAATCATGATTGTGGTTGATTCCAGCCTTGAAGCCAAAGCAGCCATCCAATGGGCTCTCTCTCACACTGTGCAAAGCCAGGATAAAATTGTGCTGCTTCATGTCACCAAATCTTCAAACTCAAAACAAGCTAAAGGTGAGGAGGCCAGCAAGGAGAGAGCTCCATCTCCAAGGGCTTATGCACTTGTCCACTCTTTGAGGAACATGTGTCAGTTGAAGAGACCAGAGGTAGAAATTGAGGTTGCAGTGGTGGTGGAAGGGAATAAGGAGAAAGGTCCAACAATACTGGAAGAGGCAAAGAAACAAGAAGTGGGACTGCTTGTTCTGGGGCAGAAAAAGAAGTCTACTACATGGCATCTGCTGATGATGTGGGCCGGCAACCGGGTCGGCGGCGGCAGCGGCGGTGTGGTGGAGTACTGTATACAAAATGCCAGTTGCATGGCAGTTGCTGTGAGGAGGAAAAGCAGGAAGGTTGGAGGGTATTTGATTACTACAAAGCGCCAGAAAGATTTCTGGCTATTGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

312

Amino Acids

34.27

Weight (kDa)

9.81

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03720 AT2G03720
fragaria_vesca	FvH4_4g29580 FvH4_5g13480
malus_domestica	MD06G1204700.v1.1 MD13G1059000.v1.1 MD14G1215800.v1.1 MD16G1058300.v1.1
prunus_persica	Prupe.1G290800_v2.0.a1 Prupe.1G290800_v2.0.a1 Prupe.5G208600_v2.0.a1
pyrus_communis	pycom06g18280 pycom13g05250 pycom14g17860 pycom16g05100
rosa_chinensis	RchiOBHm_Chr4g0437821 RchiOBHm_Chr7g0183591
rosa_laevigata	RLG00000005039 RLG00000006410
rosa_multiflora	Rmu_co8408683.1_g000001 Rmu_sc0003610.1_g000018 Rmu_sc0004193.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270380 Rroxscaffold_5G00378990
rosa_rugosa	Rorug04G0303800 Rorug06G0458700
rosa_samantha	Rh4AG356200 Rh4BG367000 Rh4CG380900 Rh4DG361400 Rh7AG059800 Rh7BG059500 Rh7CG061500 Rh7DG059900
rosa_wichuraiana	Rw4G031420 Rw7G004910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	459
AccI	GTMKAC	2 cut(s)	752, 829
AciI	CCGC	4 cut(s)	798, 801, 807, 810
AcsI	RAATTY	2 cut(s)	99, 308
AcuI	CTGAAG	1 cut(s)	96
AcvI	CACGTG	1 cut(s)	235
AdeI	CACNNNGTG	1 cut(s)	478
AfaI	GTAC	1 cut(s)	824
AfiI	CCNNNNNNNGG	2 cut(s)	459, 789
AflIII	ACRYGT	2 cut(s)	232, 612
AgsI	TTSAA	3 cut(s)	440, 525, 625
AjnI	CCWGG	1 cut(s)	486
AloI	GAACNNNNNNTCC	2 cut(s)	714, 746
AluBI	AGCT	7 cut(s)	30, 110, 356, 389, 404, 539, 569
AluI	AGCT	7 cut(s)	30, 110, 356, 389, 404, 539, 569
Alw21I	GWGCWC	1 cut(s)	571
Alw26I	GTCTC	1 cut(s)	622
AlwNI	CAGNNNCTG	1 cut(s)	857
AoxI	GGCC	6 cut(s)	20, 77, 227, 552, 780, 930
ApeKI	GCWGC	4 cut(s)	353, 449, 502, 804
ApoI	RAATTY	2 cut(s)	99, 308
Asp700I	GAANNNNTTC	1 cut(s)	917
AspLEI	GCGC	1 cut(s)	909
AspS9I	GGNCC	4 cut(s)	21, 78, 683, 780
AsuC2I	CCSGG	1 cut(s)	791
AsuHPI	GGTGA	4 cut(s)	240, 380, 505, 557
AvaII	GGWCC	1 cut(s)	683
BanII	GRGCYC	2 cut(s)	466, 571
BbrPI	CACGTG	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	571
BbvI	GCAGC	4 cut(s)	365, 461, 489, 816
BccI	CCATC	3 cut(s)	296, 461, 580
BcgI	CGANNNNNNTGC	2 cut(s)	775, 809
BciT130I	CCWGG	1 cut(s)	488
BcnI	CCSGG	1 cut(s)	791
BcoDI	GTCTC	1 cut(s)	622
BfaI	CTAG	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	25
BfoI	RGCGCY	1 cut(s)	910
BisI	GCNGC	7 cut(s)	354, 450, 503, 799, 802, 805, 808
BlsI	GCNGC	7 cut(s)	355, 451, 504, 800, 803, 806, 809
BmcAI	AGTACT	1 cut(s)	824
Bme1390I	CCNGG	2 cut(s)	488, 791
Bme18I	GGWCC	1 cut(s)	683
BmgT120I	GGNCC	4 cut(s)	21, 78, 683, 780
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	2 cut(s)	488, 791
BmsI	GCATC	2 cut(s)	153, 772
BpuMI	CCSGG	1 cut(s)	791
BsaAI	YACGTR	1 cut(s)	235
BsaI	GGTCTC	1 cut(s)	622
BsaJI	CCNNGG	2 cut(s)	74, 578
Bsc4I	CCNNNNNNNGG	2 cut(s)	459, 789
Bse118I	RCCGGY	1 cut(s)	782
Bse1I	ACTGG	2 cut(s)	699, 840
BseBI	CCWGG	1 cut(s)	488
BseDI	CCNNGG	2 cut(s)	74, 578
BseGI	GGATG	1 cut(s)	453
BseLI	CCNNNNNNNGG	2 cut(s)	459, 789
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	2 cut(s)	699, 840
BseRI	GAGGAG	2 cut(s)	563, 877
BseXI	GCAGC	4 cut(s)	365, 461, 489, 816
BseYI	CCCAGC	1 cut(s)	389
BshFI	GGCC	6 cut(s)	22, 79, 229, 554, 782, 932
BsiHKAI	GWGCWC	1 cut(s)	571
BsiSI	CCGG	2 cut(s)	783, 790
BslFI	GGGAC	1 cut(s)	735
BslI	CCNNNNNNNGG	2 cut(s)	459, 789
BsmAI	GTCTC	1 cut(s)	622
BsmFI	GGGAC	1 cut(s)	735
BsnI	GGCC	6 cut(s)	22, 79, 229, 554, 782, 932
Bso31I	GGTCTC	1 cut(s)	622
Bsp1286I	GDGCHC	2 cut(s)	466, 571
Bsp19I	CCATGG	1 cut(s)	74
BspACI	CCGC	4 cut(s)	798, 801, 807, 810
BspANI	GGCC	6 cut(s)	22, 79, 229, 554, 782, 932
BspCNI	CTCAG	1 cut(s)	182
BspHI	TCATGA	2 cut(s)	33, 414
BspLI	GGNNCC	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	622
BsrFI	RCCGGY	1 cut(s)	782
BsrI	ACTGG	2 cut(s)	699, 840
BssAI	RCCGGY	1 cut(s)	782
BssECI	CCNNGG	2 cut(s)	74, 578
BssNAI	GTATAC	1 cut(s)	830
BssT1I	CCWWGG	2 cut(s)	74, 578
Bst1107I	GTATAC	1 cut(s)	830
Bst2UI	CCWGG	1 cut(s)	488
Bst4CI	ACNGT	3 cut(s)	261, 478, 827
Bst6I	CTCTTC	3 cut(s)	333, 620, 693
BstBAI	YACGTR	1 cut(s)	235
BstC8I	GCNNGC	2 cut(s)	556, 784
BstDEI	CTNAG	1 cut(s)	169
BstDSI	CCRYGG	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	453
BstH2I	RGCGCY	1 cut(s)	910
BstHHI	GCGC	1 cut(s)	909
BstMAI	GTCTC	1 cut(s)	622
BstMWI	GCNNNNNNNGC	3 cut(s)	449, 804, 807
BstNI	CCWGG	1 cut(s)	488
BstNSI	RCATGY	1 cut(s)	616
BstSCI	CCNGG	2 cut(s)	486, 789
BstSFI	CTRYAG	1 cut(s)	25
BstV1I	GCAGC	4 cut(s)	365, 461, 489, 816
BstXI	CCANNNNNNTGG	1 cut(s)	847
BstZ17I	GTATAC	1 cut(s)	830
BsuRI	GGCC	6 cut(s)	22, 79, 229, 554, 782, 932
BtgI	CCRYGG	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	453
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	2 cut(s)	474, 660
Cac8I	GCNNGC	2 cut(s)	556, 784
CaiI	CAGNNNCTG	1 cut(s)	857
CciI	TCATGA	2 cut(s)	33, 414
CfoI	GCGC	1 cut(s)	909
Cfr10I	RCCGGY	1 cut(s)	782
Cfr13I	GGNCC	4 cut(s)	21, 78, 683, 780
Csp6I	GTAC	1 cut(s)	823
CviAII	CATG	8 cut(s)	18, 34, 75, 415, 509, 613, 759, 847
CviQI	GTAC	1 cut(s)	823
DdeI	CTNAG	1 cut(s)	169
DraIII	CACNNNGTG	1 cut(s)	478
Eam1104I	CTCTTC	3 cut(s)	333, 620, 693
EarI	CTCTTC	3 cut(s)	333, 620, 693
Ecl136II	GAGCTC	1 cut(s)	569
Eco130I	CCWWGG	2 cut(s)	74, 578
Eco24I	GRGCYC	2 cut(s)	466, 571
Eco31I	GGTCTC	1 cut(s)	622
Eco47I	GGWCC	1 cut(s)	683
Eco53kI	GAGCTC	1 cut(s)	569
Eco57I	CTGAAG	1 cut(s)	96
Eco72I	CACGTG	1 cut(s)	235
EcoICRI	GAGCTC	1 cut(s)	569
EcoRII	CCWGG	1 cut(s)	486
EcoT14I	CCWWGG	2 cut(s)	74, 578
EcoT38I	GRGCYC	2 cut(s)	466, 571
ErhI	CCWWGG	2 cut(s)	74, 578
FaeI	CATG	8 cut(s)	21, 37, 78, 418, 512, 616, 762, 850
FaqI	GGGAC	1 cut(s)	735
FatI	CATG	8 cut(s)	17, 33, 74, 414, 508, 612, 758, 846
FblI	GTMKAC	2 cut(s)	752, 829
Fnu4HI	GCNGC	7 cut(s)	354, 450, 503, 799, 802, 805, 808
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	2 cut(s)	466, 571
Fsp4HI	GCNGC	7 cut(s)	354, 450, 503, 799, 802, 805, 808
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	1 cut(s)	908
GluI	GCNGC	7 cut(s)	354, 450, 503, 799, 802, 805, 808
GsaI	CCCAGC	1 cut(s)	393
HaeII	RGCGCY	1 cut(s)	910
HaeIII	GGCC	6 cut(s)	22, 79, 229, 554, 782, 932
HapII	CCGG	2 cut(s)	783, 790
HhaI	GCGC	1 cut(s)	909
Hin1II	CATG	8 cut(s)	21, 37, 78, 418, 512, 616, 762, 850
Hin6I	GCGC	1 cut(s)	907
HinP1I	GCGC	1 cut(s)	907
HinfI	GANTC	2 cut(s)	317, 428
HpaII	CCGG	2 cut(s)	783, 790
HphI	GGTGA	4 cut(s)	240, 380, 505, 557
Hpy166II	GTNNAC	4 cut(s)	248, 598, 753, 830
Hpy188I	TCNGA	3 cut(s)	50, 280, 408
Hpy188III	TCNNGA	4 cut(s)	34, 95, 171, 415
Hpy8I	GTNNAC	4 cut(s)	248, 598, 753, 830
HpyAV	CCTTC	2 cut(s)	659, 871
HpyCH4III	ACNGT	3 cut(s)	261, 478, 827
HpyCH4IV	ACGT	2 cut(s)	44, 234
HpyCH4V	TGCA	5 cut(s)	17, 481, 590, 653, 846
HpyF10VI	GCNNNNNNNGC	3 cut(s)	449, 804, 807
HpyF3I	CTNAG	1 cut(s)	169
HpySE526I	ACGT	2 cut(s)	44, 234
Hsp92II	CATG	8 cut(s)	21, 37, 78, 418, 512, 616, 762, 850
HspAI	GCGC	1 cut(s)	907
KroI	GCCGGC	1 cut(s)	782
KroNI	GCCGGC	1 cut(s)	784
LmnI	GCTCC	1 cut(s)	574
Lsp1109I	GCAGC	4 cut(s)	365, 461, 489, 816
LweI	GCATC	2 cut(s)	153, 772
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	2 cut(s)	44, 234
MaeIII	GTNAC	1 cut(s)	511
MboII	GAAGA	5 cut(s)	347, 350, 513, 637, 710
MhlI	GDGCHC	2 cut(s)	466, 571
MluCI	AATT	8 cut(s)	65, 99, 135, 197, 205, 308, 495, 642
MmeI	TCCRAC	3 cut(s)	310, 710, 862
MroNI	GCCGGC	1 cut(s)	782
MroXI	GAANNNNTTC	1 cut(s)	917
MseI	TTAA	1 cut(s)	68
MslI	CAYNNNNRTG	1 cut(s)	419
MspA1I	CMGCKG	2 cut(s)	356, 807
MspI	CCGG	2 cut(s)	783, 790
MspR9I	CCNGG	2 cut(s)	488, 791
MvaI	CCWGG	1 cut(s)	488
MwoI	GCNNNNNNNGC	3 cut(s)	449, 804, 807
NaeI	GCCGGC	1 cut(s)	784
NciI	CCSGG	1 cut(s)	791
NcoI	CCATGG	1 cut(s)	74
NgoMIV	GCCGGC	1 cut(s)	782
NlaIII	CATG	8 cut(s)	21, 37, 78, 418, 512, 616, 762, 850
NlaIV	GGNNCC	1 cut(s)	80
NmuCI	GTSAC	1 cut(s)	511
NspI	RCATGY	1 cut(s)	616
PagI	TCATGA	2 cut(s)	33, 414
PciI	ACATGT	1 cut(s)	612
PdiI	GCCGGC	1 cut(s)	784
PdmI	GAANNNNTTC	1 cut(s)	917
PfeI	GAWTC	2 cut(s)	317, 428
PflMI	CCANNNNNTGG	1 cut(s)	459
PkrI	GCNGC	7 cut(s)	355, 451, 504, 800, 803, 806, 809
PmaCI	CACGTG	1 cut(s)	235
PmlI	CACGTG	1 cut(s)	235
Ppu21I	YACGTR	1 cut(s)	235
PscI	ACATGT	1 cut(s)	612
Psp124BI	GAGCTC	1 cut(s)	571
Psp6I	CCWGG	1 cut(s)	486
PspCI	CACGTG	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	486
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	4 cut(s)	21, 78, 683, 780
PstNI	CAGNNNCTG	1 cut(s)	857
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	1 cut(s)	824
RsaNI	GTAC	1 cut(s)	823
RseI	CAYNNNNRTG	1 cut(s)	419
SacI	GAGCTC	1 cut(s)	571
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	7 cut(s)	354, 450, 503, 799, 802, 805, 808
Sau96I	GGNCC	4 cut(s)	21, 78, 683, 780
ScaI	AGTACT	1 cut(s)	824
ScrFI	CCNGG	2 cut(s)	488, 791
SduI	GDGCHC	2 cut(s)	466, 571
SfaNI	GCATC	2 cut(s)	153, 772
SfcI	CTRYAG	1 cut(s)	25
SinI	GGWCC	1 cut(s)	683
SmiMI	CAYNNNNRTG	1 cut(s)	419
Sse9I	AATT	8 cut(s)	65, 99, 135, 197, 205, 308, 495, 642
SsiI	CCGC	4 cut(s)	798, 801, 807, 810
SspMI	CTAG	1 cut(s)	95
SstI	GAGCTC	1 cut(s)	571
StyD4I	CCNGG	2 cut(s)	486, 789
StyI	CCWWGG	2 cut(s)	74, 578
TaaI	ACNGT	3 cut(s)	261, 478, 827
TaiI	ACGT	2 cut(s)	47, 237
TasI	AATT	8 cut(s)	65, 99, 135, 197, 205, 308, 495, 642
TatI	WGTACW	1 cut(s)	822
TauI	GCSGC	3 cut(s)	801, 804, 810
TfiI	GAWTC	2 cut(s)	317, 428
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	2 cut(s)	481, 660
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	4 cut(s)	353, 449, 502, 804
Tsp45I	GTSAC	1 cut(s)	511
TspDTI	ATGAA	3 cut(s)	22, 154, 497
TspRI	CASTG	2 cut(s)	481, 660
Van91I	CCANNNNNTGG	1 cut(s)	459
VpaK11BI	GGWCC	1 cut(s)	683
XapI	RAATTY	2 cut(s)	99, 308
XbaI	TCTAGA	1 cut(s)	94
XceI	RCATGY	1 cut(s)	616
XmiI	GTMKAC	2 cut(s)	752, 829
XmnI	GAANNNNTTC	1 cut(s)	917
XspI	CTAG	1 cut(s)	95
ZrmI	AGTACT	1 cut(s)	824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.