Rroxscaffold_3G00270380

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003407
Physical Location & Seq
Reverse (-)
62958361 .. 62959517
1157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00270380.1

Sequence Viewer

Length: 747 bp
ATGAGTAGGAGATATGCAAGATTGTGTGTTGGCCGTGGCGCGTTTTGTTTTCCGGTCCATTCCCGGACTCTGGGATCTAAATCGAAACAGAAACCCGCCTCTAGAAGCATCAGACGTCGTTCCTCCTCCTCTTCCATCAAAACTGGCCATTTGAAAACAGATCAGTTTCTGAGTAATAGCAGTGATGACCTTGGTGCAGAAATCAGAGTCAAAAATGGGGATGAGATTGGGAACAAGATAATGGTAGTTGTGGATTCGAGCCTCGAAGCCAAAGGAGCGCTTGAATGGGCACTGTCCCACACTGTTCAAACCCAAGACACCATTGTGCTTCTTCATGTAGCTCAGCCCTGCAAACAAGACTCAAATGCGAAGAAGCTTAATTTAAGAGCTTTTGAGCTTCTTCACTCTATGAAAAAAGACTGCCGGAGGAGAAGGCCTGGGGTGGAAGTTGAGGTAGCATTGCTTGAAGGGAAGGAAAGAGGTGCAATAATTGTGGAAGAAGCAAAGAAACAAAAGGTATCTCTACTTGTTCTTGGCCAAAAAAGAGAGAGGTCAATGTGGTGGAAGCTAATCAACAAGTGCTGGACCAGTAGGCGAAGGAGAAGAACATCCAGAAGAGGTGAGGTTGTGGAATACTGCATACAAAATGCTGGATGCATGACGATTGCGGTGAGGAGAAAGAGCAGAAGACTTGGAGGCTACTTGATCACCACCAAGCTTCACAAGAATTTCTGGCTTCTAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

248

Amino Acids

28.26

Weight (kDa)

10.62

Isoelectric Point (pI)

63.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 79 - 225 2.6e-15 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 118
AccII CGCG 1 cut(s) 41
AciI CCGC 2 cut(s) 96, 668
AclWI GGATC 1 cut(s) 82
AcoI YGGCCR 3 cut(s) 31, 145, 535
AcsI RAATTY 1 cut(s) 727
AcyI GRCGYC 1 cut(s) 115
AfeI AGCGCT 1 cut(s) 279
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 4 cut(s) 154, 284, 308, 467
AjnI CCWGG 1 cut(s) 436
AleI CACNNNNGTG 1 cut(s) 323
AluBI AGCT 7 cut(s) 341, 376, 389, 397, 568, 718, 743
AluI AGCT 7 cut(s) 341, 376, 389, 397, 568, 718, 743
AlwI GGATC 1 cut(s) 82
AlwNI CAGNNNCTG 1 cut(s) 169
Aor51HI AGCGCT 1 cut(s) 279
AoxI GGCC 4 cut(s) 31, 145, 434, 535
ApoI RAATTY 1 cut(s) 727
AspLEI GCGC 2 cut(s) 41, 280
AspS9I GGNCC 2 cut(s) 55, 585
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 3 cut(s) 632, 682, 700
AvaII GGWCC 2 cut(s) 55, 585
BaeGI GKGCMC 1 cut(s) 292
BalI TGGCCA 2 cut(s) 147, 537
BbsI GAAGAC 1 cut(s) 694
BccI CCATC 1 cut(s) 143
BceAI ACGGC 1 cut(s) 18
BciT130I CCWGG 1 cut(s) 438
BclI TGATCA 1 cut(s) 705
BcnI CCSGG 1 cut(s) 64
BfaI CTAG 2 cut(s) 102, 740
BfoI RGCGCY 1 cut(s) 281
BlpI GCTNAGC 1 cut(s) 342
Bme1390I CCNGG 2 cut(s) 64, 438
Bme18I GGWCC 2 cut(s) 55, 585
BmgT120I GGNCC 2 cut(s) 55, 585
BmrFI CCNGG 2 cut(s) 64, 438
BmsI GCATC 2 cut(s) 117, 644
BpiI GAAGAC 1 cut(s) 694
Bpu1102I GCTNAGC 1 cut(s) 342
BpuMI CCSGG 1 cut(s) 64
BsaBI GATNNNNATC 1 cut(s) 79
BsaHI GRCGYC 1 cut(s) 115
BsaJI CCNNGG 3 cut(s) 34, 190, 437
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 2 cut(s) 148, 588
Bse3DI GCAATG 1 cut(s) 458
Bse8I GATNNNNATC 1 cut(s) 79
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 3 cut(s) 34, 190, 437
BseGI GGATG 3 cut(s) 226, 608, 659
BseJI GATNNNNATC 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMI GCAATG 1 cut(s) 458
BseMII CTCAG 2 cut(s) 161, 356
BseNI ACTGG 2 cut(s) 148, 588
BseRI GAGGAG 4 cut(s) 115, 118, 442, 688
BseSI GKGCMC 1 cut(s) 292
BsgI GTGCAG 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 4 cut(s) 33, 147, 436, 537
BsiSI CCGG 3 cut(s) 53, 64, 424
BslFI GGGAC 1 cut(s) 280
BslI CCNNNNNNNGG 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 280
BsnI GGCC 4 cut(s) 33, 147, 436, 537
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 3 cut(s) 74, 160, 705
Bsp1720I GCTNAGC 1 cut(s) 342
BspACI CCGC 2 cut(s) 96, 668
BspANI GGCC 4 cut(s) 33, 147, 436, 537
BspCNI CTCAG 2 cut(s) 162, 355
BspFNI CGCG 1 cut(s) 41
BspPI GGATC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 458
BsrI ACTGG 2 cut(s) 148, 588
BssECI CCNNGG 3 cut(s) 34, 190, 437
BssMI GATC 3 cut(s) 74, 160, 705
BssNI GRCGYC 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 2 cut(s) 294, 304
Bst6I CTCTTC 2 cut(s) 136, 610
BstACI GRCGYC 1 cut(s) 115
BstDEI CTNAG 2 cut(s) 170, 342
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 3 cut(s) 226, 608, 659
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 2 cut(s) 41, 280
BstKTI GATC 3 cut(s) 77, 163, 708
BstMBI GATC 3 cut(s) 74, 160, 705
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstNI CCWGG 1 cut(s) 438
BstSCI CCNGG 2 cut(s) 62, 436
BstSLI GKGCMC 1 cut(s) 292
BstUI CGCG 1 cut(s) 41
BstV2I GAAGAC 1 cut(s) 694
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BsuRI GGCC 4 cut(s) 33, 147, 436, 537
BtgI CCRYGG 1 cut(s) 34
BtsCI GGATG 3 cut(s) 226, 608, 659
BtsI GCAGTG 1 cut(s) 187
BtsIMutI CAGTG 3 cut(s) 187, 290, 300
CaiI CAGNNNCTG 1 cut(s) 169
CfoI GCGC 2 cut(s) 41, 280
Cfr13I GGNCC 2 cut(s) 55, 585
CspCI CAANNNNNGTGG 2 cut(s) 474, 509
CviAII CATG 2 cut(s) 335, 658
DdeI CTNAG 2 cut(s) 170, 342
DpnI GATC 3 cut(s) 76, 162, 707
DpnII GATC 3 cut(s) 74, 160, 705
EaeI YGGCCR 3 cut(s) 31, 145, 535
Eam1104I CTCTTC 2 cut(s) 136, 610
EarI CTCTTC 2 cut(s) 136, 610
Eco130I CCWWGG 1 cut(s) 190
Eco147I AGGCCT 1 cut(s) 436
Eco47I GGWCC 2 cut(s) 55, 585
Eco47III AGCGCT 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 436
EcoT14I CCWWGG 1 cut(s) 190
EcoT22I ATGCAT 1 cut(s) 659
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 2 cut(s) 338, 661
FaiI YATR 5 cut(s) 15, 336, 410, 641, 659
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FaqI GGGAC 1 cut(s) 280
FatI CATG 2 cut(s) 334, 657
FauI CCCGC 1 cut(s) 103
FbaI TGATCA 1 cut(s) 705
FokI GGATG 3 cut(s) 233, 595, 666
FspBI CTAG 2 cut(s) 102, 740
GlaI GCGC 2 cut(s) 40, 279
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 4 cut(s) 33, 147, 436, 537
HapII CCGG 3 cut(s) 53, 64, 424
HhaI GCGC 2 cut(s) 41, 280
Hin1I GRCGYC 1 cut(s) 115
Hin1II CATG 2 cut(s) 338, 661
Hin6I GCGC 2 cut(s) 39, 278
HinP1I GCGC 2 cut(s) 39, 278
HindIII AAGCTT 2 cut(s) 374, 716
HinfI GANTC 4 cut(s) 67, 207, 254, 359
HpaII CCGG 3 cut(s) 53, 64, 424
HphI GGTGA 3 cut(s) 632, 682, 700
Hpy188I TCNGA 3 cut(s) 113, 171, 206
Hpy188III TCNNGA 2 cut(s) 102, 612
Hpy99I CGWCG 1 cut(s) 120
HpyAV CCTTC 4 cut(s) 426, 461, 466, 591
HpyCH4III ACNGT 2 cut(s) 294, 304
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 6 cut(s) 17, 197, 351, 485, 639, 657
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 2 cut(s) 170, 342
HpySE526I ACGT 1 cut(s) 115
Hsp92I GRCGYC 1 cut(s) 115
Hsp92II CATG 2 cut(s) 338, 661
HspAI GCGC 2 cut(s) 39, 278
Ksp22I TGATCA 1 cut(s) 705
Kzo9I GATC 3 cut(s) 74, 160, 705
LmnI GCTCC 1 cut(s) 275
LweI GCATC 2 cut(s) 117, 644
MaeI CTAG 2 cut(s) 102, 740
MaeII ACGT 1 cut(s) 115
MalI GATC 3 cut(s) 76, 162, 707
MboI GATC 3 cut(s) 74, 160, 705
MboII GAAGA 8 cut(s) 123, 323, 382, 392, 509, 615, 627, 699
MflI RGATCY 1 cut(s) 74
MhlI GDGCHC 1 cut(s) 292
MlsI TGGCCA 2 cut(s) 147, 537
MluCI AATT 3 cut(s) 379, 489, 727
MluNI TGGCCA 2 cut(s) 147, 537
MlyI GAGTC 3 cut(s) 61, 216, 353
Mox20I TGGCCA 2 cut(s) 147, 537
Mph1103I ATGCAT 1 cut(s) 659
MscI TGGCCA 2 cut(s) 147, 537
MseI TTAA 3 cut(s) 378, 383, 745
MslI CAYNNNNRTG 1 cut(s) 323
Msp20I TGGCCA 2 cut(s) 147, 537
MspI CCGG 3 cut(s) 53, 64, 424
MspR9I CCNGG 2 cut(s) 64, 438
MvaI CCWGG 1 cut(s) 438
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 275
NciI CCSGG 1 cut(s) 64
NdeII GATC 3 cut(s) 74, 160, 705
NlaIII CATG 2 cut(s) 338, 661
NsiI ATGCAT 1 cut(s) 659
OliI CACNNNNGTG 1 cut(s) 323
PceI AGGCCT 1 cut(s) 436
PfeI GAWTC 1 cut(s) 254
PfoI TCCNGGA 1 cut(s) 62
PleI GAGTC 3 cut(s) 61, 215, 353
PpsI GAGTC 3 cut(s) 61, 215, 353
Psp6I CCWGG 1 cut(s) 436
PspGI CCWGG 1 cut(s) 436
PspPI GGNCC 2 cut(s) 55, 585
PstNI CAGNNNCTG 1 cut(s) 169
PsuI RGATCY 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 3 cut(s) 378, 383, 745
Sau3AI GATC 3 cut(s) 74, 160, 705
Sau96I GGNCC 2 cut(s) 55, 585
SchI GAGTC 3 cut(s) 61, 216, 353
ScrFI CCNGG 2 cut(s) 64, 438
SduI GDGCHC 1 cut(s) 292
SfaNI GCATC 2 cut(s) 117, 644
SinI GGWCC 2 cut(s) 55, 585
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 3 cut(s) 379, 489, 727
SseBI AGGCCT 1 cut(s) 436
SsiI CCGC 2 cut(s) 96, 668
SspMI CTAG 2 cut(s) 102, 740
StuI AGGCCT 1 cut(s) 436
StyD4I CCNGG 2 cut(s) 62, 436
StyI CCWWGG 1 cut(s) 190
TaaI ACNGT 2 cut(s) 294, 304
TaiI ACGT 1 cut(s) 118
TaqI TCGA 3 cut(s) 83, 257, 264
TasI AATT 3 cut(s) 379, 489, 727
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 3 cut(s) 378, 383, 745
Tru9I TTAA 3 cut(s) 378, 383, 745
TscAI CASTG 3 cut(s) 187, 297, 307
TspDTI ATGAA 2 cut(s) 323, 425
TspRI CASTG 3 cut(s) 187, 297, 307
VpaK11BI GGWCC 2 cut(s) 55, 585
XapI RAATTY 1 cut(s) 727
XbaI TCTAGA 1 cut(s) 101
XspI CTAG 2 cut(s) 102, 740
ZraI GACGTC 1 cut(s) 116
Zsp2I ATGCAT 1 cut(s) 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.