Rmu_sc0004193.1_g000014

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004193.1
OG0003407
Physical Location & Seq
Forward (+)
48182 .. 49615
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004193.1_g000014.1.cds

Sequence Viewer

Length: 720 bp
atggggaagataggcacaaagttgccaagtttctgcctgaaccgaattaggcctcatgttcgagttcgttcgccgcctatacagtcaaaaccagatgctgcagatatcactaaaaatggtgggagagctgcgaattctggcaatgcaggagaagagaaagttaaagatggtggtggagctaaaaaacccggggtttttgctaggaagatcatgattgtggttgattcaagcattgaagccaagggagctttacaatgggctctttctcacactgttcagaaccaggacaagcttgtactgcttcatgtgaccaaaccttcaacttcaaaacaaggtgaggatattgtagcaccaagggcttatgagcttgttcactctctgaggaatatgtgccagttgaagagacctgaggtacaaactgaggttgcagtggtggaattagggaaaaaagagaaagggccaacaatagtggaagaggccaaaaagcaaggggtggcactgctggttctggggcagaaaaagaggtctacgacgtggcggctgctgatgatgtgggcggggagcaaccgtgttggtggcggcggtggaggtggtggggcggtggagtactgtatacagaatgccagttgcatggcaattgctgtaaggaggaaaagcaagaaggttggagggtacttgatcactacaaagcgccagaaagatttctggctcttggcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

239

Amino Acids

25.82

Weight (kDa)

10.15

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 527, 613
AciI CCGC 6 cut(s) 74, 538, 557, 579, 582, 599
AcsI RAATTY 1 cut(s) 133
AfaI GTAC 4 cut(s) 297, 414, 608, 674
AgsI TTSAA 5 cut(s) 228, 236, 321, 327, 400
AjiI CACGTC 1 cut(s) 534
AjnI CCWGG 1 cut(s) 282
AluBI AGCT 5 cut(s) 128, 179, 248, 292, 367
AluI AGCT 5 cut(s) 128, 179, 248, 292, 367
Alw26I GTCTC 1 cut(s) 397
AlwNI CAGNNNCTG 1 cut(s) 98
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 4 cut(s) 50, 458, 477, 714
ApeKI GCWGC 3 cut(s) 98, 128, 541
ApoI RAATTY 1 cut(s) 133
Asp700I GAANNNNTTC 1 cut(s) 701
AspLEI GCGC 1 cut(s) 693
AspS9I GGNCC 1 cut(s) 458
AsuC2I CCSGG 2 cut(s) 189, 190
AsuHPI GGTGA 1 cut(s) 347
AvaI CYCGRG 1 cut(s) 188
AxyI CCTNAGG 1 cut(s) 408
BanII GRGCYC 1 cut(s) 262
BbvI GCAGC 3 cut(s) 85, 115, 528
BccI CCATC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 284
BclI TGATCA 1 cut(s) 678
BcnI CCSGG 2 cut(s) 189, 190
BcoDI GTCTC 1 cut(s) 397
BfaI CTAG 2 cut(s) 201, 718
BfmI CTRYAG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 694
BisI GCNGC 6 cut(s) 74, 99, 129, 539, 542, 580
BlsI GCNGC 6 cut(s) 75, 100, 130, 540, 543, 581
BmcAI AGTACT 1 cut(s) 608
Bme1390I CCNGG 3 cut(s) 189, 190, 284
BmeT110I CYCGRG 1 cut(s) 188
BmgBI CACGTC 1 cut(s) 534
BmgT120I GGNCC 1 cut(s) 458
BmrFI CCNGG 3 cut(s) 189, 190, 284
BmsI GCATC 1 cut(s) 85
BpuMI CCSGG 2 cut(s) 189, 190
BsaI GGTCTC 1 cut(s) 397
BsaJI CCNNGG 4 cut(s) 188, 189, 240, 353
BsaXI ACNNNNNCTCC 2 cut(s) 553, 583
Bse1I ACTGG 2 cut(s) 394, 624
Bse21I CCTNAGG 1 cut(s) 408
Bse3DI GCAATG 1 cut(s) 148
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 4 cut(s) 188, 189, 240, 353
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 3 cut(s) 371, 399, 411
BseNI ACTGG 2 cut(s) 394, 624
BseXI GCAGC 3 cut(s) 85, 115, 528
BshFI GGCC 4 cut(s) 52, 460, 479, 716
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 1 cut(s) 189
BsmAI GTCTC 1 cut(s) 397
BsmI GAATGC 1 cut(s) 625
BsnI GGCC 4 cut(s) 52, 460, 479, 716
Bso31I GGTCTC 1 cut(s) 397
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 262
Bsp143I GATC 2 cut(s) 207, 678
BspACI CCGC 6 cut(s) 74, 538, 557, 579, 582, 599
BspANI GGCC 4 cut(s) 52, 460, 479, 716
BspCNI CTCAG 3 cut(s) 372, 400, 412
BspHI TCATGA 1 cut(s) 210
BspMAI CTGCAG 1 cut(s) 103
BspTNI GGTCTC 1 cut(s) 397
BsrDI GCAATG 1 cut(s) 148
BsrI ACTGG 2 cut(s) 394, 624
BssECI CCNNGG 4 cut(s) 188, 189, 240, 353
BssMI GATC 2 cut(s) 207, 678
BssNAI GTATAC 1 cut(s) 614
BssT1I CCWWGG 2 cut(s) 240, 353
Bst1107I GTATAC 1 cut(s) 614
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 4 cut(s) 84, 274, 569, 611
Bst6I CTCTTC 3 cut(s) 147, 395, 468
BstDEI CTNAG 3 cut(s) 380, 408, 420
BstH2I RGCGCY 1 cut(s) 694
BstHHI GCGC 1 cut(s) 693
BstKTI GATC 2 cut(s) 210, 681
BstMAI GTCTC 1 cut(s) 397
BstMBI GATC 2 cut(s) 207, 678
BstMWI GCNNNNNNNGC 3 cut(s) 245, 298, 356
BstNI CCWGG 1 cut(s) 284
BstSCI CCNGG 3 cut(s) 187, 188, 282
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 3 cut(s) 85, 115, 528
BstXI CCANNNNNNTGG 1 cut(s) 631
BstZ17I GTATAC 1 cut(s) 614
Bsu36I CCTNAGG 1 cut(s) 408
BsuRI GGCC 4 cut(s) 52, 460, 479, 716
BtrI CACGTC 1 cut(s) 534
BtsI GCAGTG 2 cut(s) 435, 497
BtsIMutI CAGTG 3 cut(s) 270, 435, 497
CaiI CAGNNNCTG 1 cut(s) 98
CciI TCATGA 1 cut(s) 210
CfoI GCGC 1 cut(s) 693
Cfr13I GGNCC 1 cut(s) 458
Cfr9I CCCGGG 1 cut(s) 188
Csp6I GTAC 4 cut(s) 296, 413, 607, 673
CspCI CAANNNNNGTGG 2 cut(s) 450, 485
CviAII CATG 4 cut(s) 56, 211, 305, 631
CviQI GTAC 4 cut(s) 296, 413, 607, 673
DdeI CTNAG 3 cut(s) 380, 408, 420
DpnI GATC 2 cut(s) 209, 680
DpnII GATC 2 cut(s) 207, 678
Eam1104I CTCTTC 3 cut(s) 147, 395, 468
EarI CTCTTC 3 cut(s) 147, 395, 468
Eco130I CCWWGG 2 cut(s) 240, 353
Eco147I AGGCCT 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 262
Eco31I GGTCTC 1 cut(s) 397
Eco32I GATATC 1 cut(s) 106
Eco81I CCTNAGG 1 cut(s) 408
Eco88I CYCGRG 1 cut(s) 188
EcoRI GAATTC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 282
EcoRV GATATC 1 cut(s) 106
EcoT14I CCWWGG 2 cut(s) 240, 353
EcoT38I GRGCYC 1 cut(s) 262
ErhI CCWWGG 2 cut(s) 240, 353
FaeI CATG 4 cut(s) 59, 214, 308, 634
FaiI YATR 8 cut(s) 57, 80, 212, 306, 363, 389, 614, 632
FatI CATG 4 cut(s) 55, 210, 304, 630
FauI CCCGC 1 cut(s) 550
FbaI TGATCA 1 cut(s) 678
FblI GTMKAC 2 cut(s) 527, 613
Fnu4HI GCNGC 6 cut(s) 74, 99, 129, 539, 542, 580
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 6 cut(s) 74, 99, 129, 539, 542, 580
FspBI CTAG 2 cut(s) 201, 718
GlaI GCGC 1 cut(s) 692
GluI GCNGC 6 cut(s) 74, 99, 129, 539, 542, 580
HaeII RGCGCY 1 cut(s) 694
HaeIII GGCC 4 cut(s) 52, 460, 479, 716
HapII CCGG 1 cut(s) 189
HhaI GCGC 1 cut(s) 693
Hin1II CATG 4 cut(s) 59, 214, 308, 634
Hin6I GCGC 1 cut(s) 691
HinP1I GCGC 1 cut(s) 691
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 1 cut(s) 224
HpaII CCGG 1 cut(s) 189
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 3 cut(s) 373, 528, 614
Hpy188I TCNGA 2 cut(s) 279, 381
Hpy188III TCNNGA 1 cut(s) 211
Hpy8I GTNNAC 3 cut(s) 373, 528, 614
Hpy99I CGWCG 1 cut(s) 535
HpyAV CCTTC 2 cut(s) 327, 655
HpyCH4III ACNGT 4 cut(s) 84, 274, 569, 611
HpyCH4IV ACGT 1 cut(s) 533
HpyCH4V TGCA 4 cut(s) 101, 146, 428, 630
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 298, 356
HpyF3I CTNAG 3 cut(s) 380, 408, 420
HpySE526I ACGT 1 cut(s) 533
Hsp92II CATG 4 cut(s) 59, 214, 308, 634
HspAI GCGC 1 cut(s) 691
Ksp22I TGATCA 1 cut(s) 678
Kzo9I GATC 2 cut(s) 207, 678
LmnI GCTCC 3 cut(s) 176, 245, 561
Lsp1109I GCAGC 3 cut(s) 85, 115, 528
LweI GCATC 1 cut(s) 85
MaeI CTAG 2 cut(s) 201, 718
MaeII ACGT 1 cut(s) 533
MaeIII GTNAC 1 cut(s) 307
MalI GATC 2 cut(s) 209, 680
MboI GATC 2 cut(s) 207, 678
MboII GAAGA 5 cut(s) 19, 164, 217, 412, 485
MfeI CAATTG 1 cut(s) 636
MhlI GDGCHC 1 cut(s) 262
MluCI AATT 4 cut(s) 45, 133, 437, 636
MmeI TCCRAC 1 cut(s) 646
MroXI GAANNNNTTC 1 cut(s) 701
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 1 cut(s) 215
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 3 cut(s) 189, 190, 284
MunI CAATTG 1 cut(s) 636
Mva1269I GAATGC 1 cut(s) 625
MvaI CCWGG 1 cut(s) 284
MwoI GCNNNNNNNGC 3 cut(s) 245, 298, 356
NciI CCSGG 2 cut(s) 189, 190
NdeII GATC 2 cut(s) 207, 678
NlaIII CATG 4 cut(s) 59, 214, 308, 634
NmuCI GTSAC 1 cut(s) 307
PagI TCATGA 1 cut(s) 210
PceI AGGCCT 1 cut(s) 52
PctI GAATGC 1 cut(s) 625
PdmI GAANNNNTTC 1 cut(s) 701
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 6 cut(s) 75, 100, 130, 540, 543, 581
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PspPI GGNCC 1 cut(s) 458
PstI CTGCAG 1 cut(s) 103
PstNI CAGNNNCTG 1 cut(s) 98
RsaI GTAC 4 cut(s) 297, 414, 608, 674
RsaNI GTAC 4 cut(s) 296, 413, 607, 673
RseI CAYNNNNRTG 1 cut(s) 215
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 6 cut(s) 74, 99, 129, 539, 542, 580
Sau3AI GATC 2 cut(s) 207, 678
Sau96I GGNCC 1 cut(s) 458
ScaI AGTACT 1 cut(s) 608
ScrFI CCNGG 3 cut(s) 189, 190, 284
SduI GDGCHC 1 cut(s) 262
SfaNI GCATC 1 cut(s) 85
SfcI CTRYAG 1 cut(s) 99
SmaI CCCGGG 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 215
Sse9I AATT 4 cut(s) 45, 133, 437, 636
SseBI AGGCCT 1 cut(s) 52
SsiI CCGC 6 cut(s) 74, 538, 557, 579, 582, 599
SspMI CTAG 2 cut(s) 201, 718
StuI AGGCCT 1 cut(s) 52
StyD4I CCNGG 3 cut(s) 187, 188, 282
StyI CCWWGG 2 cut(s) 240, 353
TaaI ACNGT 4 cut(s) 84, 274, 569, 611
TaiI ACGT 1 cut(s) 536
TaqI TCGA 1 cut(s) 61
TasI AATT 4 cut(s) 45, 133, 437, 636
TatI WGTACW 2 cut(s) 295, 606
TauI GCSGC 3 cut(s) 76, 541, 582
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 3 cut(s) 277, 435, 504
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 3 cut(s) 98, 128, 541
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 1 cut(s) 293
TspMI CCCGGG 1 cut(s) 188
TspRI CASTG 3 cut(s) 277, 435, 504
XapI RAATTY 1 cut(s) 133
XmaI CCCGGG 1 cut(s) 188
XmiI GTMKAC 2 cut(s) 527, 613
XmnI GAANNNNTTC 1 cut(s) 701
XspI CTAG 2 cut(s) 201, 718
ZrmI AGTACT 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.