MD06G1204700.v1.1

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0003407
Physical Location & Seq
Forward (+)
34015149 .. 34016920
1772 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1204700.v1.1.491

Sequence Viewer

Length: 717 bp
ATGAGCAGGAAATATGCGAGACTGTGTGGTGCCCGGCCGACTGTTTGTCTTCCAATCCATTCACTGTCTCTCTGGTCGAAACGCAAGTCTAGACGGCGTTCCGGTTCCGTCGAAGCTACTACTGATCATAACAGCACAAAGTTCTTGAACAATATTAGCAGCAGGAGGGATGACGACTTGGGTAGTACTGCAGAAGGTGTGAAAAATGGGAACAAGATAATGGTTGTTGTGGATTCAAGCCTTGAAGCTAAGGGAGCTCTCGAATGGGCACTATCCCACACTGTCCAATCCCAGGACACAATTGTTCTTCTTCATGTAGCTAAACCCTCCAAACAACAAGGTGCAGACTCAAATGGGAGCACTAATTTAAGGGATTTTGAACTGCTTCGCTCGATGAAAAATGTGTGCCAAAGGAAAAGGCCTGGGGTGGAAGTGGAGGTAGCAATGCTTGAAGGGAAAGAAAAGGGCCCAATAATAGTGGAAGAAGCAAAGAGACAAAGGGTGTCCCTACTTGTTCTTGGCCAAGAAAGAAAGAGGTCGACTTGGTGGCAGCTAATCAAGAGGTGGACAAGGAGCAGATCATCGGGGGAGGTTTTTGTGGAATACTGCATTCAAAATTCTGCATGTATGACGATTGCTGTGAGGAGAAAGAGCAAGAAATTGGGAGGTTACTTGATCACCACTAAGCTTCACAAGAATTTCTGGCTTCTAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

239

Amino Acids

26.87

Weight (kDa)

10.22

Isoelectric Point (pI)

59.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 72 - 215 8.7e-16 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 29
AccI GTMKAC 1 cut(s) 539
AcoI YGGCCR 2 cut(s) 35, 520
AcsI RAATTY 2 cut(s) 616, 697
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 292
AgsI TTSAA 6 cut(s) 148, 237, 245, 380, 452, 614
AhdI GACNNNNNGTC 1 cut(s) 45
AjnI CCWGG 2 cut(s) 291, 421
AluBI AGCT 7 cut(s) 116, 248, 257, 320, 553, 688, 713
AluI AGCT 7 cut(s) 116, 248, 257, 320, 553, 688, 713
Alw21I GWGCWC 2 cut(s) 259, 362
Alw26I GTCTC 3 cut(s) 13, 72, 487
AoxI GGCC 4 cut(s) 35, 419, 466, 520
ApaI GGGCCC 1 cut(s) 470
ApeKI GCWGC 2 cut(s) 159, 550
ApoI RAATTY 2 cut(s) 616, 697
ArsI GACNNNNNNTTYG 2 cut(s) 71, 103
Asp700I GAANNNNTTC 1 cut(s) 384
AspS9I GGNCC 2 cut(s) 466, 467
AsuC2I CCSGG 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 670
BaeGI GKGCMC 3 cut(s) 34, 271, 470
BalI TGGCCA 1 cut(s) 522
BanI GGYRCC 1 cut(s) 29
BanII GRGCYC 2 cut(s) 259, 470
BbsI GAAGAC 1 cut(s) 41
Bbv12I GWGCWC 2 cut(s) 259, 362
BbvI GCAGC 2 cut(s) 171, 562
BceAI ACGGC 1 cut(s) 110
BciT130I CCWGG 2 cut(s) 293, 423
BclI TGATCA 2 cut(s) 124, 675
BcnI CCSGG 1 cut(s) 34
BcoDI GTCTC 3 cut(s) 13, 72, 487
BfaI CTAG 2 cut(s) 90, 710
BfmI CTRYAG 1 cut(s) 189
BisI GCNGC 2 cut(s) 160, 551
BlsI GCNGC 2 cut(s) 161, 552
BmcAI AGTACT 1 cut(s) 187
Bme1390I CCNGG 3 cut(s) 34, 293, 423
BmeRI GACNNNNNGTC 1 cut(s) 45
BmgT120I GGNCC 2 cut(s) 466, 467
BmiI GGNNCC 3 cut(s) 31, 106, 468
BmrFI CCNGG 3 cut(s) 34, 293, 423
BpiI GAAGAC 1 cut(s) 41
Bpu10I CCTNAGC 1 cut(s) 249
BpuMI CCSGG 1 cut(s) 34
BsaJI CCNNGG 2 cut(s) 291, 422
BsaWI WCCGGW 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse3DI GCAATG 1 cut(s) 450
BseBI CCWGG 2 cut(s) 293, 423
BseDI CCNNGG 2 cut(s) 291, 422
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMI GCAATG 1 cut(s) 450
BseRI GAGGAG 1 cut(s) 658
BseSI GKGCMC 3 cut(s) 34, 271, 470
BseX3I CGGCCG 1 cut(s) 35
BseXI GCAGC 2 cut(s) 171, 562
BsgI GTGCAG 1 cut(s) 363
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 4 cut(s) 37, 421, 468, 522
BshNI GGYRCC 1 cut(s) 29
BsiEI CGRYCG 1 cut(s) 38
BsiHKAI GWGCWC 2 cut(s) 259, 362
BsiSI CCGG 2 cut(s) 34, 102
BslFI GGGAC 1 cut(s) 490
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 3 cut(s) 13, 72, 487
BsmFI GGGAC 1 cut(s) 490
BsmI GAATGC 1 cut(s) 609
BsnI GGCC 4 cut(s) 37, 421, 468, 522
Bsp120I GGGCCC 1 cut(s) 466
Bsp1286I GDGCHC 5 cut(s) 34, 259, 271, 362, 470
Bsp143I GATC 3 cut(s) 124, 578, 675
BspANI GGCC 4 cut(s) 37, 421, 468, 522
BspLI GGNNCC 3 cut(s) 31, 106, 468
BspMAI CTGCAG 1 cut(s) 193
BspT107I GGYRCC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 450
BssECI CCNNGG 2 cut(s) 291, 422
BssMI GATC 3 cut(s) 124, 578, 675
Bst2UI CCWGG 2 cut(s) 293, 423
Bst4CI ACNGT 4 cut(s) 24, 43, 66, 283
BstDEI CTNAG 2 cut(s) 249, 684
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 3 cut(s) 127, 581, 678
BstMAI GTCTC 3 cut(s) 13, 72, 487
BstMBI GATC 3 cut(s) 124, 578, 675
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNI CCWGG 2 cut(s) 293, 423
BstNSI RCATGY 1 cut(s) 627
BstSCI CCNGG 3 cut(s) 32, 291, 421
BstSFI CTRYAG 1 cut(s) 189
BstSLI GKGCMC 3 cut(s) 34, 271, 470
BstV1I GCAGC 2 cut(s) 171, 562
BstV2I GAAGAC 1 cut(s) 41
BstZI CGGCCG 1 cut(s) 35
BsuRI GGCC 4 cut(s) 37, 421, 468, 522
BtsCI GGATG 1 cut(s) 175
BtsIMutI CAGTG 2 cut(s) 62, 279
Cfr13I GGNCC 2 cut(s) 466, 467
Csp6I GTAC 1 cut(s) 186
CspCI CAANNNNNGTGG 2 cut(s) 459, 494
CviAII CATG 2 cut(s) 314, 624
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 2 cut(s) 249, 684
DpnI GATC 3 cut(s) 126, 580, 677
DpnII GATC 3 cut(s) 124, 578, 675
DriI GACNNNNNGTC 1 cut(s) 45
EaeI YGGCCR 2 cut(s) 35, 520
EagI CGGCCG 1 cut(s) 35
Eam1105I GACNNNNNGTC 1 cut(s) 45
Ecl136II GAGCTC 1 cut(s) 257
EclXI CGGCCG 1 cut(s) 35
Eco147I AGGCCT 1 cut(s) 421
Eco24I GRGCYC 2 cut(s) 259, 470
Eco52I CGGCCG 1 cut(s) 35
Eco53kI GAGCTC 1 cut(s) 257
EcoICRI GAGCTC 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 466
EcoRII CCWGG 2 cut(s) 291, 421
EcoT38I GRGCYC 2 cut(s) 259, 470
FaeI CATG 2 cut(s) 317, 627
FaiI YATR 5 cut(s) 15, 129, 315, 625, 629
FaqI GGGAC 1 cut(s) 490
FatI CATG 2 cut(s) 313, 623
FbaI TGATCA 2 cut(s) 124, 675
FblI GTMKAC 1 cut(s) 539
Fnu4HI GCNGC 2 cut(s) 160, 551
FokI GGATG 1 cut(s) 182
FriOI GRGCYC 2 cut(s) 259, 470
Fsp4HI GCNGC 2 cut(s) 160, 551
FspBI CTAG 2 cut(s) 90, 710
GluI GCNGC 2 cut(s) 160, 551
HaeIII GGCC 4 cut(s) 37, 421, 468, 522
HapII CCGG 2 cut(s) 34, 102
Hin1II CATG 2 cut(s) 317, 627
HincII GTYRAC 1 cut(s) 540
HindII GTYRAC 1 cut(s) 540
HindIII AAGCTT 1 cut(s) 686
HinfI GANTC 2 cut(s) 233, 347
HpaII CCGG 2 cut(s) 34, 102
HphI GGTGA 1 cut(s) 670
Hpy166II GTNNAC 2 cut(s) 540, 567
Hpy188III TCNNGA 4 cut(s) 90, 145, 260, 559
Hpy8I GTNNAC 2 cut(s) 540, 567
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 2 cut(s) 188, 446
HpyCH4III ACNGT 4 cut(s) 24, 43, 66, 283
HpyCH4V TGCA 4 cut(s) 191, 344, 609, 623
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 2 cut(s) 249, 684
Hsp92II CATG 2 cut(s) 317, 627
Ksp22I TGATCA 2 cut(s) 124, 675
Kzo9I GATC 3 cut(s) 124, 578, 675
LmnI GCTCC 3 cut(s) 254, 357, 573
LpnPI CCDG 9 cut(s) 47, 58, 115, 148, 278, 305, 408, 435, 688
Lsp1109I GCAGC 2 cut(s) 171, 562
MaeI CTAG 2 cut(s) 90, 710
MaeIII GTNAC 1 cut(s) 668
MalI GATC 3 cut(s) 126, 580, 677
MboI GATC 3 cut(s) 124, 578, 675
MboII GAAGA 4 cut(s) 41, 299, 302, 494
MfeI CAATTG 1 cut(s) 300
MhlI GDGCHC 5 cut(s) 34, 259, 271, 362, 470
MlsI TGGCCA 1 cut(s) 522
MluCI AATT 5 cut(s) 300, 364, 616, 659, 697
MluNI TGGCCA 1 cut(s) 522
MlyI GAGTC 1 cut(s) 341
MnlI CCTC 8 cut(s) 159, 337, 430, 528, 555, 583, 636, 659
Mox20I TGGCCA 1 cut(s) 522
MroXI GAANNNNTTC 1 cut(s) 384
MscI TGGCCA 1 cut(s) 522
MseI TTAA 1 cut(s) 368
Msp20I TGGCCA 1 cut(s) 522
MspI CCGG 2 cut(s) 34, 102
MspR9I CCNGG 3 cut(s) 34, 293, 423
MunI CAATTG 1 cut(s) 300
Mva1269I GAATGC 1 cut(s) 609
MvaI CCWGG 2 cut(s) 293, 423
MwoI GCNNNNNNNGC 1 cut(s) 254
NciI CCSGG 1 cut(s) 34
NdeII GATC 3 cut(s) 124, 578, 675
NlaIII CATG 2 cut(s) 317, 627
NlaIV GGNNCC 3 cut(s) 31, 106, 468
NspI RCATGY 1 cut(s) 627
PceI AGGCCT 1 cut(s) 421
PctI GAATGC 1 cut(s) 609
PdmI GAANNNNTTC 1 cut(s) 384
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 2 cut(s) 161, 552
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
Psp124BI GAGCTC 1 cut(s) 259
Psp6I CCWGG 2 cut(s) 291, 421
PspGI CCWGG 2 cut(s) 291, 421
PspN4I GGNNCC 3 cut(s) 31, 106, 468
PspOMI GGGCCC 1 cut(s) 466
PspPI GGNCC 2 cut(s) 466, 467
PstI CTGCAG 1 cut(s) 193
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SacI GAGCTC 1 cut(s) 259
SalI GTCGAC 1 cut(s) 538
SaqAI TTAA 1 cut(s) 368
SatI GCNGC 2 cut(s) 160, 551
Sau3AI GATC 3 cut(s) 124, 578, 675
Sau96I GGNCC 2 cut(s) 466, 467
ScaI AGTACT 1 cut(s) 187
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 3 cut(s) 34, 293, 423
SduI GDGCHC 5 cut(s) 34, 259, 271, 362, 470
SfcI CTRYAG 1 cut(s) 189
Sse9I AATT 5 cut(s) 300, 364, 616, 659, 697
SseBI AGGCCT 1 cut(s) 421
SspI AATATT 1 cut(s) 154
SspMI CTAG 2 cut(s) 90, 710
SstI GAGCTC 1 cut(s) 259
StuI AGGCCT 1 cut(s) 421
StyD4I CCNGG 3 cut(s) 32, 291, 421
TaaI ACNGT 4 cut(s) 24, 43, 66, 283
TaqI TCGA 5 cut(s) 77, 111, 261, 392, 539
TasI AATT 5 cut(s) 300, 364, 616, 659, 697
TatI WGTACW 1 cut(s) 185
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TscAI CASTG 2 cut(s) 69, 286
TseI GCWGC 2 cut(s) 159, 550
TspDTI ATGAA 2 cut(s) 302, 410
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 2 cut(s) 69, 286
XapI RAATTY 2 cut(s) 616, 697
XbaI TCTAGA 1 cut(s) 89
XceI RCATGY 1 cut(s) 627
XmiI GTMKAC 1 cut(s) 539
XmnI GAANNNNTTC 1 cut(s) 384
XspI CTAG 2 cut(s) 90, 710
ZrmI AGTACT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.