RchiOBHm_Chr4g0437821

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0003407
Physical Location & Seq
Reverse (-)
60793169 .. 60794910
1742 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40604

Sequence Viewer

Length: 723 bp
ATGGGGAAGATAGGCACAAAGTTGCCAAGTTTCTGCCTGAACCGAATTAGGCCTCATGTTCGAGTTCGTTCGCCGCCTATACAGTCGAAACCAGATGCTGTAGATATCACTAAAAATGGTGGGAGAGCTGCGAATTCTGGCAATGCAGGAGAAGAGAAAGTTAAAGATGGTGGTGGAGCTAAAAAACCCGGGGTGGTTTTTGCTAGGAAGATCATGATTGTGGTTGATTCAAGCATTGAAGCCAAGGGAGCTTTACAATGGGCTCTTTCTCACACTGTTCAGAACCAGGACAAGCTTGTACTGCTTCATGTGACCAAACCTTCAACTTCAAAACAAGGTGAGGATATTGTAGCACCAAGGGCTTATGAGCTTGTTCACTCTCTGAGGAATATGTGCCAGTTGAAGAGACCTGAGGTACAAACTGAGGTTGCAGTGGTGGAATTAGGGAAAAAAGAGAAAGGGCCAACAATAGTGGAAGAGGCCAAAAAGCAAGGGGTGGCACTGCTGGTTCTGGGGCAGAAAAAGAGGTCTACGACGTGGCGGCTGCTGATGATGTGGGCGGGGAGCAACCGTGTTGGTGGCGGCGGTGGAGGTGGTGGGGCGGTGGAGTACTGTATACAGAATGCCAGTTGCATGGCAATTGCTGTGAGGAGGAAAAGCAAGAAGGTTGGAGGGTACTTGATCACTACAAAGCGCCAGAAAGATTTCTGGCTCTTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

240

Amino Acids

25.95

Weight (kDa)

10.15

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 69 - 216 1.4e-15 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 530, 616
AciI CCGC 6 cut(s) 74, 541, 560, 582, 585, 602
AcsI RAATTY 1 cut(s) 133
AfaI GTAC 4 cut(s) 300, 417, 611, 677
AgsI TTSAA 5 cut(s) 231, 239, 324, 330, 403
AjiI CACGTC 1 cut(s) 537
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 5 cut(s) 128, 179, 251, 295, 370
AluI AGCT 5 cut(s) 128, 179, 251, 295, 370
Alw26I GTCTC 1 cut(s) 400
AlwNI CAGNNNCTG 1 cut(s) 98
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 3 cut(s) 50, 461, 480
ApeKI GCWGC 2 cut(s) 128, 544
ApoI RAATTY 1 cut(s) 133
Asp700I GAANNNNTTC 1 cut(s) 704
AspLEI GCGC 1 cut(s) 696
AspS9I GGNCC 1 cut(s) 461
AsuC2I CCSGG 2 cut(s) 189, 190
AsuHPI GGTGA 1 cut(s) 350
AvaI CYCGRG 1 cut(s) 188
AxyI CCTNAGG 1 cut(s) 411
BanII GRGCYC 1 cut(s) 265
BbvI GCAGC 2 cut(s) 115, 531
BccI CCATC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 287
BclI TGATCA 1 cut(s) 681
BcnI CCSGG 2 cut(s) 189, 190
BcoDI GTCTC 1 cut(s) 400
BfaI CTAG 1 cut(s) 204
BfmI CTRYAG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 697
BisI GCNGC 5 cut(s) 74, 129, 542, 545, 583
BlsI GCNGC 5 cut(s) 75, 130, 543, 546, 584
BmcAI AGTACT 1 cut(s) 611
Bme1390I CCNGG 3 cut(s) 189, 190, 287
BmeT110I CYCGRG 1 cut(s) 188
BmgBI CACGTC 1 cut(s) 537
BmgT120I GGNCC 1 cut(s) 461
BmrFI CCNGG 3 cut(s) 189, 190, 287
BmsI GCATC 1 cut(s) 85
BpuMI CCSGG 2 cut(s) 189, 190
BsaI GGTCTC 1 cut(s) 400
BsaJI CCNNGG 4 cut(s) 188, 189, 243, 356
BsaXI ACNNNNNCTCC 2 cut(s) 556, 586
Bse1I ACTGG 2 cut(s) 397, 627
Bse21I CCTNAGG 1 cut(s) 411
Bse3DI GCAATG 1 cut(s) 148
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 4 cut(s) 188, 189, 243, 356
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 3 cut(s) 374, 402, 414
BseNI ACTGG 2 cut(s) 397, 627
BseRI GAGGAG 1 cut(s) 664
BseXI GCAGC 2 cut(s) 115, 531
BshFI GGCC 3 cut(s) 52, 463, 482
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 1 cut(s) 189
BsmAI GTCTC 1 cut(s) 400
BsmI GAATGC 1 cut(s) 628
BsnI GGCC 3 cut(s) 52, 463, 482
Bso31I GGTCTC 1 cut(s) 400
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 265
Bsp143I GATC 2 cut(s) 210, 681
BspACI CCGC 6 cut(s) 74, 541, 560, 582, 585, 602
BspANI GGCC 3 cut(s) 52, 463, 482
BspCNI CTCAG 3 cut(s) 375, 403, 415
BspHI TCATGA 1 cut(s) 213
BspTNI GGTCTC 1 cut(s) 400
BsrDI GCAATG 1 cut(s) 148
BsrI ACTGG 2 cut(s) 397, 627
BssECI CCNNGG 4 cut(s) 188, 189, 243, 356
BssMI GATC 2 cut(s) 210, 681
BssNAI GTATAC 1 cut(s) 617
BssT1I CCWWGG 2 cut(s) 243, 356
Bst1107I GTATAC 1 cut(s) 617
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 4 cut(s) 84, 277, 572, 614
Bst6I CTCTTC 3 cut(s) 147, 398, 471
BstDEI CTNAG 4 cut(s) 383, 411, 423, 720
BstH2I RGCGCY 1 cut(s) 697
BstHHI GCGC 1 cut(s) 696
BstKTI GATC 2 cut(s) 213, 684
BstMAI GTCTC 1 cut(s) 400
BstMBI GATC 2 cut(s) 210, 681
BstMWI GCNNNNNNNGC 3 cut(s) 248, 301, 359
BstNI CCWGG 1 cut(s) 287
BstSCI CCNGG 3 cut(s) 187, 188, 285
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 115, 531
BstXI CCANNNNNNTGG 1 cut(s) 634
BstZ17I GTATAC 1 cut(s) 617
Bsu36I CCTNAGG 1 cut(s) 411
BsuRI GGCC 3 cut(s) 52, 463, 482
BtrI CACGTC 1 cut(s) 537
BtsI GCAGTG 2 cut(s) 438, 500
BtsIMutI CAGTG 3 cut(s) 273, 438, 500
CaiI CAGNNNCTG 1 cut(s) 98
CciI TCATGA 1 cut(s) 213
CfoI GCGC 1 cut(s) 696
Cfr13I GGNCC 1 cut(s) 461
Cfr9I CCCGGG 1 cut(s) 188
Csp6I GTAC 4 cut(s) 299, 416, 610, 676
CspCI CAANNNNNGTGG 2 cut(s) 453, 488
CviAII CATG 4 cut(s) 56, 214, 308, 634
CviQI GTAC 4 cut(s) 299, 416, 610, 676
DdeI CTNAG 4 cut(s) 383, 411, 423, 720
DpnI GATC 2 cut(s) 212, 683
DpnII GATC 2 cut(s) 210, 681
Eam1104I CTCTTC 3 cut(s) 147, 398, 471
EarI CTCTTC 3 cut(s) 147, 398, 471
Eco130I CCWWGG 2 cut(s) 243, 356
Eco147I AGGCCT 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 265
Eco31I GGTCTC 1 cut(s) 400
Eco32I GATATC 1 cut(s) 106
Eco81I CCTNAGG 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 188
EcoRI GAATTC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 285
EcoRV GATATC 1 cut(s) 106
EcoT14I CCWWGG 2 cut(s) 243, 356
EcoT38I GRGCYC 1 cut(s) 265
ErhI CCWWGG 2 cut(s) 243, 356
FaeI CATG 4 cut(s) 59, 217, 311, 637
FaiI YATR 8 cut(s) 57, 80, 215, 309, 366, 392, 617, 635
FatI CATG 4 cut(s) 55, 213, 307, 633
FauI CCCGC 1 cut(s) 553
FbaI TGATCA 1 cut(s) 681
FblI GTMKAC 2 cut(s) 530, 616
Fnu4HI GCNGC 5 cut(s) 74, 129, 542, 545, 583
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 5 cut(s) 74, 129, 542, 545, 583
FspBI CTAG 1 cut(s) 204
GlaI GCGC 1 cut(s) 695
GluI GCNGC 5 cut(s) 74, 129, 542, 545, 583
HaeII RGCGCY 1 cut(s) 697
HaeIII GGCC 3 cut(s) 52, 463, 482
HapII CCGG 1 cut(s) 189
HhaI GCGC 1 cut(s) 696
Hin1II CATG 4 cut(s) 59, 217, 311, 637
Hin6I GCGC 1 cut(s) 694
HinP1I GCGC 1 cut(s) 694
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 1 cut(s) 227
HpaII CCGG 1 cut(s) 189
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 3 cut(s) 376, 531, 617
Hpy188I TCNGA 2 cut(s) 282, 384
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 3 cut(s) 376, 531, 617
Hpy99I CGWCG 1 cut(s) 538
HpyAV CCTTC 2 cut(s) 330, 658
HpyCH4III ACNGT 4 cut(s) 84, 277, 572, 614
HpyCH4IV ACGT 1 cut(s) 536
HpyCH4V TGCA 3 cut(s) 146, 431, 633
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 301, 359
HpyF3I CTNAG 4 cut(s) 383, 411, 423, 720
HpySE526I ACGT 1 cut(s) 536
Hsp92II CATG 4 cut(s) 59, 217, 311, 637
HspAI GCGC 1 cut(s) 694
Ksp22I TGATCA 1 cut(s) 681
Kzo9I GATC 2 cut(s) 210, 681
LmnI GCTCC 3 cut(s) 176, 248, 564
Lsp1109I GCAGC 2 cut(s) 115, 531
LweI GCATC 1 cut(s) 85
MaeI CTAG 1 cut(s) 204
MaeII ACGT 1 cut(s) 536
MaeIII GTNAC 1 cut(s) 310
MalI GATC 2 cut(s) 212, 683
MboI GATC 2 cut(s) 210, 681
MboII GAAGA 5 cut(s) 19, 164, 220, 415, 488
MfeI CAATTG 1 cut(s) 639
MhlI GDGCHC 1 cut(s) 265
MluCI AATT 4 cut(s) 45, 133, 440, 639
MmeI TCCRAC 1 cut(s) 649
MroXI GAANNNNTTC 1 cut(s) 704
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 3 cut(s) 189, 190, 287
MunI CAATTG 1 cut(s) 639
Mva1269I GAATGC 1 cut(s) 628
MvaI CCWGG 1 cut(s) 287
MwoI GCNNNNNNNGC 3 cut(s) 248, 301, 359
NciI CCSGG 2 cut(s) 189, 190
NdeII GATC 2 cut(s) 210, 681
NlaIII CATG 4 cut(s) 59, 217, 311, 637
NmuCI GTSAC 1 cut(s) 310
PagI TCATGA 1 cut(s) 213
PceI AGGCCT 1 cut(s) 52
PctI GAATGC 1 cut(s) 628
PdmI GAANNNNTTC 1 cut(s) 704
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 5 cut(s) 75, 130, 543, 546, 584
Psp6I CCWGG 1 cut(s) 285
PspGI CCWGG 1 cut(s) 285
PspPI GGNCC 1 cut(s) 461
PstNI CAGNNNCTG 1 cut(s) 98
RsaI GTAC 4 cut(s) 300, 417, 611, 677
RsaNI GTAC 4 cut(s) 299, 416, 610, 676
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 5 cut(s) 74, 129, 542, 545, 583
Sau3AI GATC 2 cut(s) 210, 681
Sau96I GGNCC 1 cut(s) 461
ScaI AGTACT 1 cut(s) 611
ScrFI CCNGG 3 cut(s) 189, 190, 287
SduI GDGCHC 1 cut(s) 265
SfaNI GCATC 1 cut(s) 85
SfcI CTRYAG 1 cut(s) 99
SmaI CCCGGG 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 4 cut(s) 45, 133, 440, 639
SseBI AGGCCT 1 cut(s) 52
SsiI CCGC 6 cut(s) 74, 541, 560, 582, 585, 602
SspMI CTAG 1 cut(s) 204
StuI AGGCCT 1 cut(s) 52
StyD4I CCNGG 3 cut(s) 187, 188, 285
StyI CCWWGG 2 cut(s) 243, 356
TaaI ACNGT 4 cut(s) 84, 277, 572, 614
TaiI ACGT 1 cut(s) 539
TaqI TCGA 2 cut(s) 61, 86
TasI AATT 4 cut(s) 45, 133, 440, 639
TatI WGTACW 2 cut(s) 298, 609
TauI GCSGC 3 cut(s) 76, 544, 585
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 3 cut(s) 280, 438, 507
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 2 cut(s) 128, 544
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 1 cut(s) 296
TspMI CCCGGG 1 cut(s) 188
TspRI CASTG 3 cut(s) 280, 438, 507
XapI RAATTY 1 cut(s) 133
XmaI CCCGGG 1 cut(s) 188
XmiI GTMKAC 2 cut(s) 530, 616
XmnI GAANNNNTTC 1 cut(s) 704
XspI CTAG 1 cut(s) 204
ZrmI AGTACT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.