Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003407

Physical Location & Seq

Genomic Coordinates Forward (+)

28939249 .. 28941042

Gene Structure 1794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G290800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGGGAAAATAGGCACCAAGTTGCCGGGCTTCTGCCTAAACAGAATTAGGCCCCATGTCAGAGTTCGTTCTCCAACTATACAGTCCAAGGTAGATGCTCCCTCAGATGTCACCAAAAACAATGCTGATAAAAAAGCTGAGAATTCTGGCAATGTTGGGGAAGAAAAAGCTGGTGGTAATGGAGCTATAGCTAGGAAAATCATGATTGTGGTTGATTCTAGCCTTGAAGCTAAAGGAGCCCTGCAATGGGCTCTCTCTCACACTGTTCAGAGCCAGGACAAACTTGTCCTGCTTCATGTAACCAAACCTTCAAGTTCAAAACAAGCAGCTGGTGAGGAGCCCAGCAAGGATGTAGCTCCAAGGGCTTATCAACTTGTTCACTCTTTGAGGAACATGTGTCAGTTGAAGAGACCAGAGGTACAAATTGAGGTTGCAGTGGTGGTAGAAGGTAACAAGGAGAAAGGTCCAACTATACTGGAAGAGGCCAGAAAACAAGAGGTGGCACTGCTTGTTCTGGGGCAGAAAAAGAGGTCTACTACATGGCGTTTGCTGATGATGTGGGCAGGCAACCGGGTGGGCGGCGGTGGCGGCAGCAGCGTTGTGGAGTACTGTATACAAAACGCCAGTTGCATGGCAGTTGCTGTGAGGAGGAAAAGCAGGAAAGTTGGAGGCTATTTGATTACCACAAAGCGCCAGAAAGATTTCTGGCTCTTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

240

Amino Acids

26.05

Weight (kDa)

10.01

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03720 AT2G03720
fragaria_vesca	FvH4_4g29580 FvH4_5g13480
malus_domestica	MD06G1204700.v1.1 MD13G1059000.v1.1 MD14G1215800.v1.1 MD16G1058300.v1.1
prunus_persica	Prupe.1G290800_v2.0.a1 Prupe.1G290800_v2.0.a1 Prupe.5G208600_v2.0.a1
pyrus_communis	pycom06g18280 pycom13g05250 pycom14g17860 pycom16g05100
rosa_chinensis	RchiOBHm_Chr4g0437821 RchiOBHm_Chr7g0183591
rosa_laevigata	RLG00000005039 RLG00000006410
rosa_multiflora	Rmu_co8408683.1_g000001 Rmu_sc0003610.1_g000018 Rmu_sc0004193.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270380 Rroxscaffold_5G00378990
rosa_rugosa	Rorug04G0303800 Rorug06G0458700
rosa_samantha	Rh4AG356200 Rh4BG367000 Rh4CG380900 Rh4DG361400 Rh7AG059800 Rh7BG059500 Rh7CG061500 Rh7DG059900
rosa_wichuraiana	Rw4G031420 Rw7G004910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	14
AccI	GTMKAC	2 cut(s)	533, 613
AciI	CCGC	3 cut(s)	579, 582, 588
AcsI	RAATTY	1 cut(s)	142
AfaI	GTAC	2 cut(s)	420, 608
AfiI	CCNNNNNNNGG	2 cut(s)	246, 247
AflIII	ACRYGT	1 cut(s)	393
AgsI	TTSAA	4 cut(s)	227, 312, 318, 406
AjnI	CCWGG	1 cut(s)	273
AluBI	AGCT	7 cut(s)	137, 170, 185, 191, 230, 329, 356
AluI	AGCT	7 cut(s)	137, 170, 185, 191, 230, 329, 356
Alw26I	GTCTC	1 cut(s)	403
AlwNI	CAGNNNCTG	1 cut(s)	641
AoxI	GGCC	2 cut(s)	50, 483
ApeKI	GCWGC	3 cut(s)	326, 591, 594
ApoI	RAATTY	1 cut(s)	142
Asp700I	GAANNNNTTC	1 cut(s)	701
AspLEI	GCGC	1 cut(s)	693
AspS9I	GGNCC	2 cut(s)	51, 464
AsuC2I	CCSGG	2 cut(s)	27, 572
AsuHPI	GGTGA	2 cut(s)	103, 344
AvaII	GGWCC	1 cut(s)	464
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	3 cut(s)	241, 253, 342
BbvI	GCAGC	3 cut(s)	338, 603, 606
BciT130I	CCWGG	1 cut(s)	275
BcnI	CCSGG	2 cut(s)	27, 572
BcoDI	GTCTC	1 cut(s)	403
BfaI	CTAG	2 cut(s)	192, 219
BfmI	CTRYAG	1 cut(s)	186
BfoI	RGCGCY	1 cut(s)	694
BisI	GCNGC	5 cut(s)	327, 580, 589, 592, 595
BlsI	GCNGC	5 cut(s)	328, 581, 590, 593, 596
BmcAI	AGTACT	1 cut(s)	608
Bme1390I	CCNGG	3 cut(s)	27, 275, 572
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	2 cut(s)	51, 464
BmiI	GGNNCC	4 cut(s)	16, 53, 238, 339
BmrFI	CCNGG	3 cut(s)	27, 275, 572
BmsI	GCATC	1 cut(s)	85
BpuMI	CCSGG	2 cut(s)	27, 572
BsaI	GGTCTC	1 cut(s)	403
BsaJI	CCNNGG	2 cut(s)	87, 359
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 247
Bse1I	ACTGG	2 cut(s)	480, 624
Bse3DI	GCAATG	2 cut(s)	157, 251
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	2 cut(s)	87, 359
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	2 cut(s)	246, 247
BseMI	GCAATG	2 cut(s)	157, 251
BseMII	CTCAG	2 cut(s)	117, 129
BseNI	ACTGG	2 cut(s)	480, 624
BseRI	GAGGAG	2 cut(s)	350, 661
BseXI	GCAGC	3 cut(s)	338, 603, 606
BseYI	CCCAGC	1 cut(s)	341
BshFI	GGCC	2 cut(s)	52, 485
BshNI	GGYRCC	1 cut(s)	14
BsiSI	CCGG	2 cut(s)	26, 571
BslI	CCNNNNNNNGG	2 cut(s)	246, 247
BsmAI	GTCTC	1 cut(s)	403
BsnI	GGCC	2 cut(s)	52, 485
Bso31I	GGTCTC	1 cut(s)	403
Bsp1286I	GDGCHC	3 cut(s)	241, 253, 342
BspACI	CCGC	3 cut(s)	579, 582, 588
BspANI	GGCC	2 cut(s)	52, 485
BspCNI	CTCAG	2 cut(s)	116, 130
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	4 cut(s)	16, 53, 238, 339
BspT107I	GGYRCC	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	403
BsrDI	GCAATG	2 cut(s)	157, 251
BsrI	ACTGG	2 cut(s)	480, 624
BssECI	CCNNGG	2 cut(s)	87, 359
BssNAI	GTATAC	1 cut(s)	614
BssT1I	CCWWGG	2 cut(s)	87, 359
Bst1107I	GTATAC	1 cut(s)	614
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	3 cut(s)	84, 265, 611
Bst6I	CTCTTC	2 cut(s)	401, 474
BstC8I	GCNNGC	1 cut(s)	565
BstDEI	CTNAG	2 cut(s)	103, 138
BstF5I	GGATG	1 cut(s)	355
BstH2I	RGCGCY	1 cut(s)	694
BstHHI	GCGC	1 cut(s)	693
BstMAI	GTCTC	1 cut(s)	403
BstMWI	GCNNNNNNNGC	5 cut(s)	236, 362, 585, 588, 594
BstNI	CCWGG	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	397
BstSCI	CCNGG	3 cut(s)	25, 273, 570
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	3 cut(s)	338, 603, 606
BstXI	CCANNNNNNTGG	1 cut(s)	631
BstZ17I	GTATAC	1 cut(s)	614
BsuRI	GGCC	2 cut(s)	52, 485
BtsCI	GGATG	1 cut(s)	355
BtsI	GCAGTG	2 cut(s)	441, 503
BtsIMutI	CAGTG	3 cut(s)	261, 441, 503
Cac8I	GCNNGC	1 cut(s)	565
CaiI	CAGNNNCTG	1 cut(s)	641
CciI	TCATGA	1 cut(s)	201
CfoI	GCGC	1 cut(s)	693
Cfr13I	GGNCC	2 cut(s)	51, 464
Csp6I	GTAC	2 cut(s)	419, 607
CviAII	CATG	6 cut(s)	56, 202, 296, 394, 540, 631
CviQI	GTAC	2 cut(s)	419, 607
DdeI	CTNAG	2 cut(s)	103, 138
DrdI	GACNNNNNNGTC	1 cut(s)	284
DseDI	GACNNNNNNGTC	1 cut(s)	284
Eam1104I	CTCTTC	2 cut(s)	401, 474
EarI	CTCTTC	2 cut(s)	401, 474
Eco130I	CCWWGG	2 cut(s)	87, 359
Eco24I	GRGCYC	3 cut(s)	241, 253, 342
Eco31I	GGTCTC	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	464
EcoO109I	RGGNCCY	1 cut(s)	51
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	273
EcoT14I	CCWWGG	2 cut(s)	87, 359
EcoT38I	GRGCYC	3 cut(s)	241, 253, 342
ErhI	CCWWGG	2 cut(s)	87, 359
FaeI	CATG	6 cut(s)	59, 205, 299, 397, 543, 634
FatI	CATG	6 cut(s)	55, 201, 295, 393, 539, 630
FblI	GTMKAC	2 cut(s)	533, 613
Fnu4HI	GCNGC	5 cut(s)	327, 580, 589, 592, 595
FokI	GGATG	1 cut(s)	362
FriOI	GRGCYC	3 cut(s)	241, 253, 342
Fsp4HI	GCNGC	5 cut(s)	327, 580, 589, 592, 595
FspBI	CTAG	2 cut(s)	192, 219
GlaI	GCGC	1 cut(s)	692
GluI	GCNGC	5 cut(s)	327, 580, 589, 592, 595
GsaI	CCCAGC	1 cut(s)	345
HaeII	RGCGCY	1 cut(s)	694
HaeIII	GGCC	2 cut(s)	52, 485
HapII	CCGG	2 cut(s)	26, 571
HhaI	GCGC	1 cut(s)	693
Hin1II	CATG	6 cut(s)	59, 205, 299, 397, 543, 634
Hin6I	GCGC	1 cut(s)	691
HinP1I	GCGC	1 cut(s)	691
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	2 cut(s)	26, 571
HphI	GGTGA	2 cut(s)	103, 344
Hpy166II	GTNNAC	3 cut(s)	379, 534, 614
Hpy188I	TCNGA	3 cut(s)	62, 106, 270
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	3 cut(s)	379, 534, 614
HpyAV	CCTTC	2 cut(s)	318, 440
HpyCH4III	ACNGT	3 cut(s)	84, 265, 611
HpyCH4V	TGCA	3 cut(s)	244, 434, 630
HpyF10VI	GCNNNNNNNGC	5 cut(s)	236, 362, 585, 588, 594
HpyF3I	CTNAG	2 cut(s)	103, 138
Hsp92II	CATG	6 cut(s)	59, 205, 299, 397, 543, 634
HspAI	GCGC	1 cut(s)	691
LmnI	GCTCC	5 cut(s)	103, 182, 236, 337, 361
Lsp1109I	GCAGC	3 cut(s)	338, 603, 606
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	2 cut(s)	192, 219
MaeIII	GTNAC	3 cut(s)	109, 298, 449
MboII	GAAGA	3 cut(s)	173, 418, 491
MhlI	GDGCHC	3 cut(s)	241, 253, 342
MluCI	AATT	3 cut(s)	45, 142, 423
MmeI	TCCRAC	3 cut(s)	98, 491, 646
MroXI	GAANNNNTTC	1 cut(s)	701
MseI	TTAA	1 cut(s)	718
MslI	CAYNNNNRTG	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	2 cut(s)	26, 571
MspR9I	CCNGG	3 cut(s)	27, 275, 572
MvaI	CCWGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	5 cut(s)	236, 362, 585, 588, 594
NciI	CCSGG	2 cut(s)	27, 572
NlaIII	CATG	6 cut(s)	59, 205, 299, 397, 543, 634
NlaIV	GGNNCC	4 cut(s)	16, 53, 238, 339
NmuCI	GTSAC	1 cut(s)	109
NspI	RCATGY	1 cut(s)	397
PagI	TCATGA	1 cut(s)	201
PciI	ACATGT	1 cut(s)	393
PdmI	GAANNNNTTC	1 cut(s)	701
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	5 cut(s)	328, 581, 590, 593, 596
PscI	ACATGT	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	273
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	4 cut(s)	16, 53, 238, 339
PspPI	GGNCC	2 cut(s)	51, 464
PstNI	CAGNNNCTG	1 cut(s)	641
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	2 cut(s)	420, 608
RsaNI	GTAC	2 cut(s)	419, 607
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	718
SatI	GCNGC	5 cut(s)	327, 580, 589, 592, 595
Sau96I	GGNCC	2 cut(s)	51, 464
ScaI	AGTACT	1 cut(s)	608
ScrFI	CCNGG	3 cut(s)	27, 275, 572
SduI	GDGCHC	3 cut(s)	241, 253, 342
SfaNI	GCATC	1 cut(s)	85
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	3 cut(s)	45, 142, 423
SsiI	CCGC	3 cut(s)	579, 582, 588
SspMI	CTAG	2 cut(s)	192, 219
StyD4I	CCNGG	3 cut(s)	25, 273, 570
StyI	CCWWGG	2 cut(s)	87, 359
TaaI	ACNGT	3 cut(s)	84, 265, 611
TasI	AATT	3 cut(s)	45, 142, 423
TatI	WGTACW	1 cut(s)	606
TauI	GCSGC	2 cut(s)	582, 591
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	718
Tru9I	TTAA	1 cut(s)	718
TscAI	CASTG	3 cut(s)	268, 441, 510
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	3 cut(s)	326, 591, 594
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	284
TspRI	CASTG	3 cut(s)	268, 441, 510
VpaK11BI	GGWCC	1 cut(s)	464
XapI	RAATTY	1 cut(s)	142
XceI	RCATGY	1 cut(s)	397
XmiI	GTMKAC	2 cut(s)	533, 613
XmnI	GAANNNNTTC	1 cut(s)	701
XspI	CTAG	2 cut(s)	192, 219
ZrmI	AGTACT	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.