Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003407

Physical Location & Seq

Genomic Coordinates Forward (+)

16633169 .. 16635401

Gene Structure 2233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G208600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGTTCCTCCAAGTTCGTCTGGTGGCCGCCTTATTCTTTGTATATATATGTATGTACAGCCAGCCAGTTTTGCCACCAAAACCAATATTGTCAACAAAATGAGTAGAAAATATGCAAGATTGTGTGGTGGCCGTCCCACACTTTGTCTTCCGATCCATTCTCTGTCTCTTCGATCGAAACACACCTCCAGACGATGTTCTGGTTCGATCAAAACTGATCATAACAGCACAGAATTCTTGAACAATATTAGCAGCAGCAAGGATGATTTCAGTGCTGACAGTTTGAAAAGAGGGTCGTCTGAAGTTGGGAATAAGATAATGGTTGTGGTGGATCCAAGCCTTGAAGCTAAGGGTGCTCTTGAATGGGCCCTATCACACACTGTACAAACCGAGGACACCATTGTACTTGTTCATGTAGCTAAGCCCTCCAAACAAGGTGCAGAGTCAGATGGGAAGATCAATTTGAGGGCTTTTGAACTTCTTCACTCTATGAAAAATGTGTGTCAAAGGAGAAGGCCTGAGGTGGAAGTGGAGGTAGCATTGCTTGAAGGGAAAGAAAAAGGACCAATAATAGTGGAAGAAGCAAAGAGACAAAGGGTGTCCCTACTCGTTCTTGGCCAAAAAAGAAAGAGATCAATGTGGTGGCAGCTCATCAAGAGGTGGACAAGGACCAGATCCTCCGGCGAGGTAACTGTCGAATACTGCATCCAAAATGCTGCATGCATGACGATTGCCGTGAGGAGGAAGAGCAAGAAACTTGGAGGCTACTTGATCACCACTAAGCTTCACAAGAATTTCTGGCTTCTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

271

Amino Acids

30.29

Weight (kDa)

10.0

Isoelectric Point (pI)

60.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03720 AT2G03720
fragaria_vesca	FvH4_4g29580 FvH4_5g13480
malus_domestica	MD06G1204700.v1.1 MD13G1059000.v1.1 MD14G1215800.v1.1 MD16G1058300.v1.1
prunus_persica	Prupe.1G290800_v2.0.a1 Prupe.1G290800_v2.0.a1 Prupe.5G208600_v2.0.a1
pyrus_communis	pycom06g18280 pycom13g05250 pycom14g17860 pycom16g05100
rosa_chinensis	RchiOBHm_Chr4g0437821 RchiOBHm_Chr7g0183591
rosa_laevigata	RLG00000005039 RLG00000006410
rosa_multiflora	Rmu_co8408683.1_g000001 Rmu_sc0003610.1_g000018 Rmu_sc0004193.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270380 Rroxscaffold_5G00378990
rosa_rugosa	Rorug04G0303800 Rorug06G0458700
rosa_samantha	Rh4AG356200 Rh4BG367000 Rh4CG380900 Rh4DG361400 Rh7AG059800 Rh7BG059500 Rh7CG061500 Rh7DG059900
rosa_wichuraiana	Rw4G031420 Rw7G004910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	28
AclWI	GGATC	4 cut(s)	148, 326, 339, 669
AcoI	YGGCCR	3 cut(s)	25, 130, 616
AcsI	RAATTY	2 cut(s)	233, 793
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	3 cut(s)	57, 384, 405
AfiI	CCNNNNNNNGG	1 cut(s)	741
AgsI	TTSAA	6 cut(s)	241, 286, 344, 362, 476, 548
AluBI	AGCT	5 cut(s)	347, 419, 649, 784, 809
AluI	AGCT	5 cut(s)	347, 419, 649, 784, 809
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	2 cut(s)	171, 583
AlwI	GGATC	4 cut(s)	148, 326, 339, 669
AoxI	GGCC	5 cut(s)	25, 130, 366, 515, 616
ApaI	GGGCCC	1 cut(s)	370
ApeKI	GCWGC	4 cut(s)	252, 255, 646, 716
ApoI	RAATTY	2 cut(s)	233, 793
Asp700I	GAANNNNTTC	1 cut(s)	480
AspS9I	GGNCC	4 cut(s)	366, 367, 563, 669
AsuHPI	GGTGA	1 cut(s)	766
AvaII	GGWCC	2 cut(s)	563, 669
AxyI	CCTNAGG	1 cut(s)	519
BaeGI	GKGCMC	1 cut(s)	370
BalI	TGGCCA	1 cut(s)	618
BamHI	GGATCC	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	370
BbsI	GAAGAC	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	4 cut(s)	264, 267, 658, 703
BccI	CCATC	1 cut(s)	443
BceAI	ACGGC	2 cut(s)	117, 719
BclI	TGATCA	2 cut(s)	217, 771
BcoDI	GTCTC	2 cut(s)	171, 583
BfaI	CTAG	1 cut(s)	806
BisI	GCNGC	5 cut(s)	28, 253, 256, 647, 717
BlpI	GCTNAGC	1 cut(s)	420
BlsI	GCNGC	5 cut(s)	29, 254, 257, 648, 718
Bme18I	GGWCC	2 cut(s)	563, 669
BmgT120I	GGNCC	4 cut(s)	366, 367, 563, 669
BmiI	GGNNCC	3 cut(s)	6, 333, 368
BmsI	GCATC	1 cut(s)	714
BpiI	GAAGAC	1 cut(s)	140
BpmI	CTGGAG	1 cut(s)	172
Bpu10I	CCTNAGC	1 cut(s)	348
Bpu1102I	GCTNAGC	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	1 cut(s)	741
Bse1I	ACTGG	1 cut(s)	66
Bse21I	CCTNAGG	1 cut(s)	519
Bse3DI	GCAATG	1 cut(s)	539
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	2 cut(s)	268, 705
BseLI	CCNNNNNNNGG	1 cut(s)	741
BseMI	GCAATG	1 cut(s)	539
BseMII	CTCAG	1 cut(s)	510
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	754
BseSI	GKGCMC	1 cut(s)	370
BseXI	GCAGC	4 cut(s)	264, 267, 658, 703
BsgI	GTGCAG	1 cut(s)	459
Bsh1285I	CGRYCG	1 cut(s)	176
BshFI	GGCC	5 cut(s)	27, 132, 368, 517, 618
BsiEI	CGRYCG	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	681
BslFI	GGGAC	2 cut(s)	120, 586
BslI	CCNNNNNNNGG	1 cut(s)	741
BsmAI	GTCTC	2 cut(s)	171, 583
BsmFI	GGGAC	2 cut(s)	120, 586
BsnI	GGCC	5 cut(s)	27, 132, 368, 517, 618
Bsp120I	GGGCCC	1 cut(s)	366
Bsp1286I	GDGCHC	2 cut(s)	358, 370
Bsp1407I	TGTACA	2 cut(s)	55, 382
Bsp143I	GATC	9 cut(s)	153, 173, 207, 217, 331, 456, 632, 674, 771
Bsp1720I	GCTNAGC	1 cut(s)	420
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	5 cut(s)	27, 132, 368, 517, 618
BspCNI	CTCAG	1 cut(s)	511
BspLI	GGNNCC	3 cut(s)	6, 333, 368
BspPI	GGATC	4 cut(s)	148, 326, 339, 669
BspQI	GCTCTTC	1 cut(s)	740
BsrDI	GCAATG	1 cut(s)	539
BsrGI	TGTACA	2 cut(s)	55, 382
BsrI	ACTGG	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	9 cut(s)	153, 173, 207, 217, 331, 456, 632, 674, 771
Bst4CI	ACNGT	3 cut(s)	281, 382, 694
Bst6I	CTCTTC	2 cut(s)	174, 740
BstAUI	TGTACA	2 cut(s)	55, 382
BstC8I	GCNNGC	2 cut(s)	63, 721
BstDEI	CTNAG	4 cut(s)	348, 420, 519, 780
BstF5I	GGATG	2 cut(s)	268, 705
BstKTI	GATC	9 cut(s)	156, 176, 210, 220, 334, 459, 635, 677, 774
BstMAI	GTCTC	2 cut(s)	171, 583
BstMBI	GATC	9 cut(s)	153, 173, 207, 217, 331, 456, 632, 674, 771
BstMCI	CGRYCG	1 cut(s)	176
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 353
BstNSI	RCATGY	1 cut(s)	723
BstSLI	GKGCMC	1 cut(s)	370
BstV1I	GCAGC	4 cut(s)	264, 267, 658, 703
BstV2I	GAAGAC	1 cut(s)	140
BstX2I	RGATCY	2 cut(s)	331, 674
BstYI	RGATCY	2 cut(s)	331, 674
Bsu36I	CCTNAGG	1 cut(s)	519
BsuRI	GGCC	5 cut(s)	27, 132, 368, 517, 618
BtsCI	GGATG	2 cut(s)	268, 705
BtsIMutI	CAGTG	2 cut(s)	277, 378
Cac8I	GCNNGC	2 cut(s)	63, 721
Cfr13I	GGNCC	4 cut(s)	366, 367, 563, 669
Csp6I	GTAC	3 cut(s)	56, 383, 404
CspCI	CAANNNNNGTGG	2 cut(s)	555, 590
CviAII	CATG	3 cut(s)	413, 720, 724
CviQI	GTAC	3 cut(s)	56, 383, 404
DdeI	CTNAG	4 cut(s)	348, 420, 519, 780
DpnI	GATC	9 cut(s)	155, 175, 209, 219, 333, 458, 634, 676, 773
DpnII	GATC	9 cut(s)	153, 173, 207, 217, 331, 456, 632, 674, 771
EaeI	YGGCCR	3 cut(s)	25, 130, 616
Eam1104I	CTCTTC	2 cut(s)	174, 740
EarI	CTCTTC	2 cut(s)	174, 740
Eco147I	AGGCCT	1 cut(s)	517
Eco24I	GRGCYC	1 cut(s)	370
Eco47I	GGWCC	2 cut(s)	563, 669
Eco57I	CTGAAG	1 cut(s)	321
Eco81I	CCTNAGG	1 cut(s)	519
EcoO109I	RGGNCCY	1 cut(s)	367
EcoRI	GAATTC	1 cut(s)	233
EcoT22I	ATGCAT	1 cut(s)	725
EcoT38I	GRGCYC	1 cut(s)	370
FaeI	CATG	3 cut(s)	416, 723, 727
FaqI	GGGAC	2 cut(s)	120, 586
FatI	CATG	3 cut(s)	412, 719, 723
FbaI	TGATCA	2 cut(s)	217, 771
Fnu4HI	GCNGC	5 cut(s)	28, 253, 256, 647, 717
FokI	GGATG	2 cut(s)	275, 692
FriOI	GRGCYC	1 cut(s)	370
Fsp4HI	GCNGC	5 cut(s)	28, 253, 256, 647, 717
FspBI	CTAG	1 cut(s)	806
GluI	GCNGC	5 cut(s)	28, 253, 256, 647, 717
GsuI	CTGGAG	1 cut(s)	172
HaeIII	GGCC	5 cut(s)	27, 132, 368, 517, 618
HapII	CCGG	1 cut(s)	681
Hin1II	CATG	3 cut(s)	416, 723, 727
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	782
HinfI	GANTC	1 cut(s)	443
HpaII	CCGG	1 cut(s)	681
HphI	GGTGA	1 cut(s)	766
Hpy166II	GTNNAC	2 cut(s)	94, 663
Hpy188I	TCNGA	3 cut(s)	153, 301, 448
Hpy188III	TCNNGA	4 cut(s)	189, 238, 359, 655
Hpy8I	GTNNAC	2 cut(s)	94, 663
HpyAV	CCTTC	2 cut(s)	507, 542
HpyCH4III	ACNGT	3 cut(s)	281, 382, 694
HpyCH4V	TGCA	5 cut(s)	116, 440, 705, 719, 723
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 353
HpyF3I	CTNAG	4 cut(s)	348, 420, 519, 780
Hsp92II	CATG	3 cut(s)	416, 723, 727
Ksp22I	TGATCA	2 cut(s)	217, 771
Kzo9I	GATC	9 cut(s)	153, 173, 207, 217, 331, 456, 632, 674, 771
LguI	GCTCTTC	1 cut(s)	740
LpnPI	CCDG	9 cut(s)	6, 75, 79, 186, 202, 531, 685, 694, 784
Lsp1109I	GCAGC	4 cut(s)	264, 267, 658, 703
LweI	GCATC	1 cut(s)	714
MaeI	CTAG	1 cut(s)	806
MaeIII	GTNAC	1 cut(s)	688
MalI	GATC	9 cut(s)	155, 175, 209, 219, 333, 458, 634, 676, 773
MboI	GATC	9 cut(s)	153, 173, 207, 217, 331, 456, 632, 674, 771
MboII	GAAGA	6 cut(s)	140, 161, 466, 473, 590, 757
MflI	RGATCY	2 cut(s)	331, 674
MhlI	GDGCHC	2 cut(s)	358, 370
MlsI	TGGCCA	1 cut(s)	618
MluCI	AATT	3 cut(s)	233, 460, 793
MluNI	TGGCCA	1 cut(s)	618
MlyI	GAGTC	1 cut(s)	452
Mox20I	TGGCCA	1 cut(s)	618
Mph1103I	ATGCAT	1 cut(s)	725
MroXI	GAANNNNTTC	1 cut(s)	480
MscI	TGGCCA	1 cut(s)	618
Msp20I	TGGCCA	1 cut(s)	618
MspI	CCGG	1 cut(s)	681
MwoI	GCNNNNNNNGC	2 cut(s)	71, 353
NdeII	GATC	9 cut(s)	153, 173, 207, 217, 331, 456, 632, 674, 771
NlaIII	CATG	3 cut(s)	416, 723, 727
NlaIV	GGNNCC	3 cut(s)	6, 333, 368
NsiI	ATGCAT	1 cut(s)	725
NspI	RCATGY	1 cut(s)	723
PaeI	GCATGC	1 cut(s)	723
PceI	AGGCCT	1 cut(s)	517
PciSI	GCTCTTC	1 cut(s)	740
PdmI	GAANNNNTTC	1 cut(s)	480
PkrI	GCNGC	5 cut(s)	29, 254, 257, 648, 718
Ple19I	CGATCG	1 cut(s)	176
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
PspN4I	GGNNCC	3 cut(s)	6, 333, 368
PspOMI	GGGCCC	1 cut(s)	366
PspPI	GGNCC	4 cut(s)	366, 367, 563, 669
PsuI	RGATCY	2 cut(s)	331, 674
PvuI	CGATCG	1 cut(s)	176
RsaI	GTAC	3 cut(s)	57, 384, 405
RsaNI	GTAC	3 cut(s)	56, 383, 404
SapI	GCTCTTC	1 cut(s)	740
SatI	GCNGC	5 cut(s)	28, 253, 256, 647, 717
Sau3AI	GATC	9 cut(s)	153, 173, 207, 217, 331, 456, 632, 674, 771
Sau96I	GGNCC	4 cut(s)	366, 367, 563, 669
SchI	GAGTC	1 cut(s)	452
SduI	GDGCHC	2 cut(s)	358, 370
SfaNI	GCATC	1 cut(s)	714
SinI	GGWCC	2 cut(s)	563, 669
SphI	GCATGC	1 cut(s)	723
Sse9I	AATT	3 cut(s)	233, 460, 793
SseBI	AGGCCT	1 cut(s)	517
SsiI	CCGC	1 cut(s)	28
SspI	AATATT	2 cut(s)	88, 247
SspMI	CTAG	1 cut(s)	806
StuI	AGGCCT	1 cut(s)	517
TaaI	ACNGT	3 cut(s)	281, 382, 694
TaqI	TCGA	4 cut(s)	172, 176, 206, 696
TasI	AATT	3 cut(s)	233, 460, 793
TatI	WGTACW	3 cut(s)	55, 382, 403
TauI	GCSGC	1 cut(s)	30
TscAI	CASTG	2 cut(s)	277, 385
TseI	GCWGC	4 cut(s)	252, 255, 646, 716
TspDTI	ATGAA	2 cut(s)	401, 506
TspRI	CASTG	2 cut(s)	277, 385
VpaK11BI	GGWCC	2 cut(s)	563, 669
XapI	RAATTY	2 cut(s)	233, 793
XceI	RCATGY	1 cut(s)	723
XmnI	GAANNNNTTC	1 cut(s)	480
XspI	CTAG	1 cut(s)	806
Zsp2I	ATGCAT	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.