Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003407

Physical Location & Seq

Genomic Coordinates Reverse (-)

3493042 .. 3494157

Gene Structure 1116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGCAAAGCAGAAATAACTTAAACACCATGGCCCCCATGCCACATCTAGAAATTTGTTCAGCTTCAGTACTCCACTTTATATATAAGAATTACAGGCATCTCAAAGTCTATCGAGTTTCATATCAGGAAATGGGGAAAATAGGCACTAAATTGCCTAATTTCTGTCTAAACAGGATTAGGCCACACGTTAGGGTTCGGTCGCCAACGATACAGTCCAAGCCAGATGTTTCAGATGTCGCTAAAAAAAGTAGTGATGGAAAATTTGAGGATTCTAGGAATGTTGGAGAAGAATCGAAAGTGAAAGCAGCTGGTGGTGGTGGTGGTGATGAAAACCCTAAAAAAGCTGCGTTGGTAATTGCTAGGAAAATCATGATTGTGGTTGATTCCAGCCTTGAAGCCAAAGGAGCTATCCAATGGGCTCTCTCTCACACTGTGCAGAGCCAGGATAAAATTGTGCTGCTTCATGTCACCAAATCTGCAAACTCAAAAAAAGGTGAGGAGACCAGCAAGGAGATAGCTCCATCTCCAAGAGCTTATGCACTTGTCCACTCTTTGAGGAACATGTGTCAGTTGAAGAGGCCAGAGGTAGAAATTGAGGTTGCAGTGGTGGTGGAAGGGAATAAGGAGAAGGGTCCAAAAATACTGGAAGAGGCAAAGAAACAAGAAGTGGGATTGCTTGTACTGGGGCAGAAAAAGAGGTCTACTACATGGCGTCTTCTGGTGATGTGGACCGGCAACCGGGTCAGCGGCGGCCGCGGCGGTGTGGTGGAGTACTGTATACAAAATGCCAGTTGCATGGCAGTTGCTGTGAGAAGGAAAAGCAGGAAGGTTGGAGGGTATTTGATTACTACAAAGCGCCAGAAAGATTTCTGGCTATTGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

295

Amino Acids

32.67

Weight (kDa)

9.97

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03720 AT2G03720
fragaria_vesca	FvH4_4g29580 FvH4_5g13480
malus_domestica	MD06G1204700.v1.1 MD13G1059000.v1.1 MD14G1215800.v1.1 MD16G1058300.v1.1
prunus_persica	Prupe.1G290800_v2.0.a1 Prupe.1G290800_v2.0.a1 Prupe.5G208600_v2.0.a1
pyrus_communis	pycom06g18280 pycom13g05250 pycom14g17860 pycom16g05100
rosa_chinensis	RchiOBHm_Chr4g0437821 RchiOBHm_Chr7g0183591
rosa_laevigata	RLG00000005039 RLG00000006410
rosa_multiflora	Rmu_co8408683.1_g000001 Rmu_sc0003610.1_g000018 Rmu_sc0004193.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270380 Rroxscaffold_5G00378990
rosa_rugosa	Rorug04G0303800 Rorug06G0458700
rosa_samantha	Rh4AG356200 Rh4BG367000 Rh4CG380900 Rh4DG361400 Rh7AG059800 Rh7BG059500 Rh7CG061500 Rh7DG059900
rosa_wichuraiana	Rw4G031420 Rw7G004910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	701, 778
AccII	CGCG	1 cut(s)	756
AciI	CCGC	5 cut(s)	747, 750, 754, 756, 759
AcoI	YGGCCR	1 cut(s)	751
AcsI	RAATTY	2 cut(s)	51, 260
AcuI	CTGAAG	1 cut(s)	48
AcyI	GRCGYC	1 cut(s)	712
AdeI	CACNNNGTG	1 cut(s)	433
AfaI	GTAC	3 cut(s)	69, 681, 773
AfiI	CCNNNNNNNGG	1 cut(s)	738
AflIII	ACRYGT	2 cut(s)	184, 561
AgsI	TTSAA	2 cut(s)	395, 574
AjnI	CCWGG	1 cut(s)	441
AluBI	AGCT	6 cut(s)	62, 308, 344, 407, 518, 533
AluI	AGCT	6 cut(s)	62, 308, 344, 407, 518, 533
Alw26I	GTCTC	1 cut(s)	494
AlwNI	CAGNNNCTG	1 cut(s)	806
AoxI	GGCC	5 cut(s)	30, 179, 578, 751, 879
ApeKI	GCWGC	3 cut(s)	305, 344, 457
ApoI	RAATTY	2 cut(s)	51, 260
Asp700I	GAANNNNTTC	1 cut(s)	866
AspLEI	GCGC	1 cut(s)	858
AspS9I	GGNCC	3 cut(s)	31, 632, 729
AsuC2I	CCSGG	1 cut(s)	740
AsuHPI	GGTGA	4 cut(s)	335, 460, 506, 733
AvaII	GGWCC	2 cut(s)	632, 729
BanII	GRGCYC	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	707
BbvI	GCAGC	3 cut(s)	317, 331, 444
BccI	CCATC	2 cut(s)	248, 529
BciT130I	CCWGG	1 cut(s)	443
BcnI	CCSGG	1 cut(s)	740
BcoDI	GTCTC	1 cut(s)	494
BfaI	CTAG	3 cut(s)	47, 273, 360
BfoI	RGCGCY	1 cut(s)	859
BisI	GCNGC	7 cut(s)	306, 345, 458, 748, 751, 754, 757
BlsI	GCNGC	7 cut(s)	307, 346, 459, 749, 752, 755, 758
BmcAI	AGTACT	2 cut(s)	69, 773
Bme1390I	CCNGG	2 cut(s)	443, 740
Bme18I	GGWCC	2 cut(s)	632, 729
BmgT120I	GGNCC	3 cut(s)	31, 632, 729
BmiI	GGNNCC	2 cut(s)	33, 633
BmrFI	CCNGG	2 cut(s)	443, 740
BmrI	ACTGGG	1 cut(s)	692
BmsI	GCATC	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	692
BpiI	GAAGAC	1 cut(s)	707
BpuMI	CCSGG	1 cut(s)	740
BsaHI	GRCGYC	1 cut(s)	712
BsaI	GGTCTC	1 cut(s)	494
BsaJI	CCNNGG	2 cut(s)	27, 754
Bsc4I	CCNNNNNNNGG	1 cut(s)	738
Bse118I	RCCGGY	1 cut(s)	731
Bse1I	ACTGG	3 cut(s)	648, 687, 789
BseBI	CCWGG	1 cut(s)	443
BseDI	CCNNGG	2 cut(s)	27, 754
BseLI	CCNNNNNNNGG	1 cut(s)	738
BseNI	ACTGG	3 cut(s)	648, 687, 789
BseRI	GAGGAG	1 cut(s)	512
BseX3I	CGGCCG	1 cut(s)	751
BseXI	GCAGC	3 cut(s)	317, 331, 444
BsgI	GTGCAG	1 cut(s)	455
Bsh1236I	CGCG	1 cut(s)	756
Bsh1285I	CGRYCG	2 cut(s)	200, 754
BshFI	GGCC	5 cut(s)	32, 181, 580, 753, 881
BsiEI	CGRYCG	2 cut(s)	200, 754
BsiSI	CCGG	2 cut(s)	732, 739
BslI	CCNNNNNNNGG	1 cut(s)	738
BsmAI	GTCTC	1 cut(s)	494
BsnI	GGCC	5 cut(s)	32, 181, 580, 753, 881
Bso31I	GGTCTC	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	5 cut(s)	747, 750, 754, 756, 759
BspANI	GGCC	5 cut(s)	32, 181, 580, 753, 881
BspFNI	CGCG	1 cut(s)	756
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	2 cut(s)	33, 633
BspTNI	GGTCTC	1 cut(s)	494
BsrFI	RCCGGY	1 cut(s)	731
BsrI	ACTGG	3 cut(s)	648, 687, 789
BssAI	RCCGGY	1 cut(s)	731
BssECI	CCNNGG	2 cut(s)	27, 754
BssNAI	GTATAC	1 cut(s)	779
BssNI	GRCGYC	1 cut(s)	712
BssT1I	CCWWGG	1 cut(s)	27
Bst1107I	GTATAC	1 cut(s)	779
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	3 cut(s)	213, 433, 776
Bst6I	CTCTTC	2 cut(s)	569, 642
BstACI	GRCGYC	1 cut(s)	712
BstDSI	CCRYGG	2 cut(s)	27, 754
BstFNI	CGCG	1 cut(s)	756
BstH2I	RGCGCY	1 cut(s)	859
BstHHI	GCGC	1 cut(s)	858
BstMAI	GTCTC	1 cut(s)	494
BstMCI	CGRYCG	2 cut(s)	200, 754
BstMWI	GCNNNNNNNGC	3 cut(s)	404, 753, 756
BstNI	CCWGG	1 cut(s)	443
BstNSI	RCATGY	1 cut(s)	565
BstSCI	CCNGG	2 cut(s)	441, 738
BstUI	CGCG	1 cut(s)	756
BstV1I	GCAGC	3 cut(s)	317, 331, 444
BstV2I	GAAGAC	1 cut(s)	707
BstXI	CCANNNNNNTGG	1 cut(s)	796
BstZ17I	GTATAC	1 cut(s)	779
BstZI	CGGCCG	1 cut(s)	751
BsuRI	GGCC	5 cut(s)	32, 181, 580, 753, 881
BtgI	CCRYGG	2 cut(s)	27, 754
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	2 cut(s)	429, 609
CaiI	CAGNNNCTG	1 cut(s)	806
CciI	TCATGA	1 cut(s)	369
CciNI	GCGGCCGC	1 cut(s)	751
CfoI	GCGC	1 cut(s)	858
Cfr10I	RCCGGY	1 cut(s)	731
Cfr13I	GGNCC	3 cut(s)	31, 632, 729
Cfr42I	CCGCGG	1 cut(s)	757
CseI	GACGC	1 cut(s)	701
Csp6I	GTAC	3 cut(s)	68, 680, 772
CviAII	CATG	7 cut(s)	28, 37, 370, 464, 562, 708, 796
CviQI	GTAC	3 cut(s)	68, 680, 772
DraIII	CACNNNGTG	1 cut(s)	433
EaeI	YGGCCR	1 cut(s)	751
EagI	CGGCCG	1 cut(s)	751
Eam1104I	CTCTTC	2 cut(s)	569, 642
EarI	CTCTTC	2 cut(s)	569, 642
EclXI	CGGCCG	1 cut(s)	751
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	421
Eco31I	GGTCTC	1 cut(s)	494
Eco47I	GGWCC	2 cut(s)	632, 729
Eco52I	CGGCCG	1 cut(s)	751
Eco57I	CTGAAG	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	7 cut(s)	31, 40, 373, 467, 565, 711, 799
FatI	CATG	7 cut(s)	27, 36, 369, 463, 561, 707, 795
FblI	GTMKAC	2 cut(s)	701, 778
Fnu4HI	GCNGC	7 cut(s)	306, 345, 458, 748, 751, 754, 757
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	7 cut(s)	306, 345, 458, 748, 751, 754, 757
FspBI	CTAG	3 cut(s)	47, 273, 360
GlaI	GCGC	1 cut(s)	857
GluI	GCNGC	7 cut(s)	306, 345, 458, 748, 751, 754, 757
HaeII	RGCGCY	1 cut(s)	859
HaeIII	GGCC	5 cut(s)	32, 181, 580, 753, 881
HapII	CCGG	2 cut(s)	732, 739
HgaI	GACGC	1 cut(s)	701
HhaI	GCGC	1 cut(s)	858
Hin1I	GRCGYC	1 cut(s)	712
Hin1II	CATG	7 cut(s)	31, 40, 373, 467, 565, 711, 799
Hin6I	GCGC	1 cut(s)	856
HinP1I	GCGC	1 cut(s)	856
HinfI	GANTC	3 cut(s)	269, 290, 383
HpaII	CCGG	2 cut(s)	732, 739
HphI	GGTGA	4 cut(s)	335, 460, 506, 733
Hpy166II	GTNNAC	4 cut(s)	547, 702, 729, 779
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	3 cut(s)	47, 125, 370
Hpy8I	GTNNAC	4 cut(s)	547, 702, 729, 779
HpyAV	CCTTC	4 cut(s)	608, 622, 807, 820
HpyCH4III	ACNGT	3 cut(s)	213, 433, 776
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	6 cut(s)	4, 436, 479, 539, 602, 795
HpyF10VI	GCNNNNNNNGC	3 cut(s)	404, 753, 756
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	1 cut(s)	712
Hsp92II	CATG	7 cut(s)	31, 40, 373, 467, 565, 711, 799
HspAI	GCGC	1 cut(s)	856
KspI	CCGCGG	1 cut(s)	757
LmnI	GCTCC	2 cut(s)	404, 523
Lsp1109I	GCAGC	3 cut(s)	317, 331, 444
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	3 cut(s)	47, 273, 360
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	466
MboII	GAAGA	4 cut(s)	299, 586, 659, 707
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	8 cut(s)	51, 88, 149, 157, 260, 354, 450, 591
MmeI	TCCRAC	2 cut(s)	262, 811
MnlI	CCTC	9 cut(s)	259, 490, 549, 570, 577, 589, 643, 690, 827
MroXI	GAANNNNTTC	1 cut(s)	866
MseI	TTAA	1 cut(s)	20
MslI	CAYNNNNRTG	1 cut(s)	374
MspA1I	CMGCKG	3 cut(s)	308, 747, 756
MspI	CCGG	2 cut(s)	732, 739
MspR9I	CCNGG	2 cut(s)	443, 740
MvaI	CCWGG	1 cut(s)	443
MvnI	CGCG	1 cut(s)	756
MwoI	GCNNNNNNNGC	3 cut(s)	404, 753, 756
NciI	CCSGG	1 cut(s)	740
NcoI	CCATGG	1 cut(s)	27
NlaIII	CATG	7 cut(s)	31, 40, 373, 467, 565, 711, 799
NlaIV	GGNNCC	2 cut(s)	33, 633
NmuCI	GTSAC	1 cut(s)	466
NotI	GCGGCCGC	1 cut(s)	751
NspI	RCATGY	1 cut(s)	565
PagI	TCATGA	1 cut(s)	369
PciI	ACATGT	1 cut(s)	561
PdmI	GAANNNNTTC	1 cut(s)	866
PfeI	GAWTC	3 cut(s)	269, 290, 383
PkrI	GCNGC	7 cut(s)	307, 346, 459, 749, 752, 755, 758
PscI	ACATGT	1 cut(s)	561
Psp6I	CCWGG	1 cut(s)	441
PspGI	CCWGG	1 cut(s)	441
PspN4I	GGNNCC	2 cut(s)	33, 633
PspPI	GGNCC	3 cut(s)	31, 632, 729
PstNI	CAGNNNCTG	1 cut(s)	806
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	3 cut(s)	69, 681, 773
RsaNI	GTAC	3 cut(s)	68, 680, 772
RseI	CAYNNNNRTG	1 cut(s)	374
SacII	CCGCGG	1 cut(s)	757
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	7 cut(s)	306, 345, 458, 748, 751, 754, 757
Sau96I	GGNCC	3 cut(s)	31, 632, 729
ScaI	AGTACT	2 cut(s)	69, 773
ScrFI	CCNGG	2 cut(s)	443, 740
SduI	GDGCHC	1 cut(s)	421
SfaNI	GCATC	1 cut(s)	106
Sfr303I	CCGCGG	1 cut(s)	757
SgrBI	CCGCGG	1 cut(s)	757
SinI	GGWCC	2 cut(s)	632, 729
SmiMI	CAYNNNNRTG	1 cut(s)	374
Sse9I	AATT	8 cut(s)	51, 88, 149, 157, 260, 354, 450, 591
SsiI	CCGC	5 cut(s)	747, 750, 754, 756, 759
SspMI	CTAG	3 cut(s)	47, 273, 360
StyD4I	CCNGG	2 cut(s)	441, 738
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	3 cut(s)	213, 433, 776
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	2 cut(s)	112, 293
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	8 cut(s)	51, 88, 149, 157, 260, 354, 450, 591
TatI	WGTACW	3 cut(s)	67, 679, 771
TauI	GCSGC	4 cut(s)	750, 753, 756, 759
TfiI	GAWTC	3 cut(s)	269, 290, 383
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TscAI	CASTG	2 cut(s)	436, 609
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	3 cut(s)	305, 344, 457
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	3 cut(s)	108, 342, 452
TspRI	CASTG	2 cut(s)	436, 609
VpaK11BI	GGWCC	2 cut(s)	632, 729
XapI	RAATTY	2 cut(s)	51, 260
XbaI	TCTAGA	1 cut(s)	46
XceI	RCATGY	1 cut(s)	565
XmiI	GTMKAC	2 cut(s)	701, 778
XmnI	GAANNNNTTC	1 cut(s)	866
XspI	CTAG	3 cut(s)	47, 273, 360
ZrmI	AGTACT	2 cut(s)	69, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.