MD13G1059000.v1.1

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0003407
Physical Location & Seq
Reverse (-)
4113153 .. 4114729
1577 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1059000.v1.1.491

Sequence Viewer

Length: 861 bp
ATGGCCCCCACACCACATCTAGAAATTTGTTCAGCTTCAGTACTCCACTTTATATATAAGAATTACAGGCATCTCAAAGTCTATCGAGTTTCATATCAGGAAATGGGGAAAATAGGCACTAAATTGCCTAATTTCTGTCTAAACAGGATTAGGCCACCCGTTAGGGTTCGGTCGCCACCGATACAGTTCAAGCCAGATGCTTCAGATGTCGCTACAAAAAGTAGTGATGGAAAATTTGAGGATTCTGGGAATGTTGGAGAAGAAGAGAAAGTGAAAGCAGCTGGTGGTGGTGGTGATGAAAAGCCTAAAAAAGCTGCGTTGGTAATTGCTAGGAAAATCATGATTGTGGTTGATTCCAGCCTTGAAGCCAAAGGAGCTATCCAATGGGCTCTCTCTCACACTGTGCAGAGCCAGGATAAAATTGTGCTGCTTCATGTCACCAAATCTGCAAACTCAAAGCAAGCTGCAGGTGAGGAGACCAGCAAGGAGATAGCTCCATCTCCAAGGGCTTATGCACTTGTCCACTCTTTGAGGAACATGTGTCGGTTGAAGAGGCCAGAGGTAGAAATTGAGGTTGCAGTGGTGGTGGAAGGGAATAAGGAGAAAGGTCCAAAAATACTGGAAGAGGCAAAGAAACAAGAAGTGGGATTGCTTGTACTGGGGCAGAAAAAGAGGTATACTACATGGCGTCTGCTGGTGATGTGGACCGGCAACCGGATCAGCGGCGGTCGCGGCGGTGTGGTGGAGTACTGTATACAAAATGCCAGTTGCATGGCAGTTGCTGTGAGAAGGAAAAGCAGGAAGGTTGGAGGGTATTTGATTACTACAAAGCGCCAGAAAGATTTCTGGCTATTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

287

Amino Acids

31.71

Weight (kDa)

9.84

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 111 - 263 6.8e-17 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 458
Acc36I ACCTGC 1 cut(s) 458
AccI GTMKAC 2 cut(s) 677, 754
AccII CGCG 1 cut(s) 732
AciI CCGC 4 cut(s) 723, 726, 732, 735
AclWI GGATC 1 cut(s) 725
AcsI RAATTY 2 cut(s) 24, 233
AcuI CTGAAG 2 cut(s) 21, 186
AcyI GRCGYC 1 cut(s) 688
AdeI CACNNNGTG 1 cut(s) 403
AfaI GTAC 3 cut(s) 42, 657, 749
AfiI CCNNNNNNNGG 1 cut(s) 714
AflIII ACRYGT 1 cut(s) 537
AgsI TTSAA 3 cut(s) 190, 365, 550
AjnI CCWGG 1 cut(s) 411
AluBI AGCT 6 cut(s) 35, 281, 314, 377, 464, 494
AluI AGCT 6 cut(s) 35, 281, 314, 377, 464, 494
Alw26I GTCTC 1 cut(s) 470
AlwI GGATC 1 cut(s) 725
AlwNI CAGNNNCTG 1 cut(s) 782
AoxI GGCC 3 cut(s) 3, 152, 554
ApeKI GCWGC 4 cut(s) 278, 314, 427, 464
ApoI RAATTY 2 cut(s) 24, 233
Asp700I GAANNNNTTC 1 cut(s) 842
AspLEI GCGC 1 cut(s) 834
AspS9I GGNCC 3 cut(s) 4, 608, 705
AsuHPI GGTGA 4 cut(s) 305, 430, 482, 709
AvaII GGWCC 2 cut(s) 608, 705
BanII GRGCYC 1 cut(s) 391
BbvI GCAGC 4 cut(s) 290, 301, 414, 451
BccI CCATC 2 cut(s) 221, 505
BciT130I CCWGG 1 cut(s) 413
BcoDI GTCTC 1 cut(s) 470
BfaI CTAG 2 cut(s) 20, 330
BfmI CTRYAG 1 cut(s) 465
BfoI RGCGCY 1 cut(s) 835
BfuAI ACCTGC 1 cut(s) 458
BisI GCNGC 6 cut(s) 279, 315, 428, 465, 724, 733
BlsI GCNGC 6 cut(s) 280, 316, 429, 466, 725, 734
BmcAI AGTACT 2 cut(s) 42, 749
Bme1390I CCNGG 1 cut(s) 413
Bme18I GGWCC 2 cut(s) 608, 705
BmgT120I GGNCC 3 cut(s) 4, 608, 705
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 413
BmrI ACTGGG 1 cut(s) 668
BmsI GCATC 2 cut(s) 79, 187
BmuI ACTGGG 1 cut(s) 668
BsaHI GRCGYC 1 cut(s) 688
BsaI GGTCTC 1 cut(s) 470
BsaJI CCNNGG 1 cut(s) 503
BsaWI WCCGGW 1 cut(s) 714
Bsc4I CCNNNNNNNGG 1 cut(s) 714
Bse118I RCCGGY 1 cut(s) 707
Bse1I ACTGG 3 cut(s) 624, 663, 765
BseBI CCWGG 1 cut(s) 413
BseDI CCNNGG 1 cut(s) 503
BseLI CCNNNNNNNGG 1 cut(s) 714
BseNI ACTGG 3 cut(s) 624, 663, 765
BseRI GAGGAG 1 cut(s) 488
BseXI GCAGC 4 cut(s) 290, 301, 414, 451
BsgI GTGCAG 1 cut(s) 425
Bsh1236I CGCG 1 cut(s) 732
Bsh1285I CGRYCG 2 cut(s) 173, 730
BshFI GGCC 3 cut(s) 5, 154, 556
BsiEI CGRYCG 2 cut(s) 173, 730
BsiSI CCGG 2 cut(s) 708, 715
BslI CCNNNNNNNGG 1 cut(s) 714
BsmAI GTCTC 1 cut(s) 470
BsnI GGCC 3 cut(s) 5, 154, 556
Bso31I GGTCTC 1 cut(s) 470
Bsp1286I GDGCHC 1 cut(s) 391
Bsp143I GATC 1 cut(s) 717
BspACI CCGC 4 cut(s) 723, 726, 732, 735
BspANI GGCC 3 cut(s) 5, 154, 556
BspFNI CGCG 1 cut(s) 732
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 469
BspMI ACCTGC 1 cut(s) 458
BspPI GGATC 1 cut(s) 725
BspTNI GGTCTC 1 cut(s) 470
BsrFI RCCGGY 1 cut(s) 707
BsrI ACTGG 3 cut(s) 624, 663, 765
BssAI RCCGGY 1 cut(s) 707
BssECI CCNNGG 1 cut(s) 503
BssMI GATC 1 cut(s) 717
BssNAI GTATAC 2 cut(s) 678, 755
BssNI GRCGYC 1 cut(s) 688
BssT1I CCWWGG 1 cut(s) 503
Bst1107I GTATAC 2 cut(s) 678, 755
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 3 cut(s) 186, 403, 752
Bst6I CTCTTC 3 cut(s) 258, 545, 618
BstACI GRCGYC 1 cut(s) 688
BstC8I GCNNGC 1 cut(s) 462
BstFNI CGCG 1 cut(s) 732
BstH2I RGCGCY 1 cut(s) 835
BstHHI GCGC 1 cut(s) 834
BstKTI GATC 1 cut(s) 720
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 1 cut(s) 717
BstMCI CGRYCG 2 cut(s) 173, 730
BstMWI GCNNNNNNNGC 3 cut(s) 374, 729, 732
BstNI CCWGG 1 cut(s) 413
BstNSI RCATGY 1 cut(s) 541
BstSCI CCNGG 1 cut(s) 411
BstSFI CTRYAG 1 cut(s) 465
BstUI CGCG 1 cut(s) 732
BstV1I GCAGC 4 cut(s) 290, 301, 414, 451
BstXI CCANNNNNNTGG 1 cut(s) 772
BstZ17I GTATAC 2 cut(s) 678, 755
BsuRI GGCC 3 cut(s) 5, 154, 556
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 2 cut(s) 399, 585
BveI ACCTGC 1 cut(s) 458
Cac8I GCNNGC 1 cut(s) 462
CaiI CAGNNNCTG 1 cut(s) 782
CciI TCATGA 1 cut(s) 339
CfoI GCGC 1 cut(s) 834
Cfr10I RCCGGY 1 cut(s) 707
Cfr13I GGNCC 3 cut(s) 4, 608, 705
CseI GACGC 1 cut(s) 677
Csp6I GTAC 3 cut(s) 41, 656, 748
CviAII CATG 5 cut(s) 340, 434, 538, 684, 772
CviQI GTAC 3 cut(s) 41, 656, 748
DpnI GATC 1 cut(s) 719
DpnII GATC 1 cut(s) 717
DraIII CACNNNGTG 1 cut(s) 403
Eam1104I CTCTTC 3 cut(s) 258, 545, 618
EarI CTCTTC 3 cut(s) 258, 545, 618
Eco130I CCWWGG 1 cut(s) 503
Eco24I GRGCYC 1 cut(s) 391
Eco31I GGTCTC 1 cut(s) 470
Eco47I GGWCC 2 cut(s) 608, 705
Eco57I CTGAAG 2 cut(s) 21, 186
EcoRII CCWGG 1 cut(s) 411
EcoT14I CCWWGG 1 cut(s) 503
EcoT38I GRGCYC 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 503
FaeI CATG 5 cut(s) 343, 437, 541, 687, 775
FatI CATG 5 cut(s) 339, 433, 537, 683, 771
FblI GTMKAC 2 cut(s) 677, 754
Fnu4HI GCNGC 6 cut(s) 279, 315, 428, 465, 724, 733
FriOI GRGCYC 1 cut(s) 391
Fsp4HI GCNGC 6 cut(s) 279, 315, 428, 465, 724, 733
FspBI CTAG 2 cut(s) 20, 330
GlaI GCGC 1 cut(s) 833
GluI GCNGC 6 cut(s) 279, 315, 428, 465, 724, 733
HaeII RGCGCY 1 cut(s) 835
HaeIII GGCC 3 cut(s) 5, 154, 556
HapII CCGG 2 cut(s) 708, 715
HgaI GACGC 1 cut(s) 677
HhaI GCGC 1 cut(s) 834
Hin1I GRCGYC 1 cut(s) 688
Hin1II CATG 5 cut(s) 343, 437, 541, 687, 775
Hin6I GCGC 1 cut(s) 832
HinP1I GCGC 1 cut(s) 832
HinfI GANTC 2 cut(s) 242, 353
HpaII CCGG 2 cut(s) 708, 715
HphI GGTGA 4 cut(s) 305, 430, 482, 709
Hpy166II GTNNAC 4 cut(s) 523, 678, 705, 755
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 3 cut(s) 20, 98, 340
Hpy8I GTNNAC 4 cut(s) 523, 678, 705, 755
HpyAV CCTTC 3 cut(s) 584, 783, 796
HpyCH4III ACNGT 3 cut(s) 186, 403, 752
HpyCH4V TGCA 6 cut(s) 406, 449, 467, 515, 578, 771
HpyF10VI GCNNNNNNNGC 3 cut(s) 374, 729, 732
Hsp92I GRCGYC 1 cut(s) 688
Hsp92II CATG 5 cut(s) 343, 437, 541, 687, 775
HspAI GCGC 1 cut(s) 832
Kzo9I GATC 1 cut(s) 717
LmnI GCTCC 2 cut(s) 374, 499
Lsp1109I GCAGC 4 cut(s) 290, 301, 414, 451
LweI GCATC 2 cut(s) 79, 187
MaeI CTAG 2 cut(s) 20, 330
MaeIII GTNAC 1 cut(s) 436
MalI GATC 1 cut(s) 719
MboI GATC 1 cut(s) 717
MboII GAAGA 4 cut(s) 272, 275, 562, 635
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 8 cut(s) 24, 61, 122, 130, 233, 324, 420, 567
MmeI TCCRAC 2 cut(s) 235, 787
MnlI CCTC 9 cut(s) 232, 466, 525, 546, 553, 565, 619, 666, 803
MroXI GAANNNNTTC 1 cut(s) 842
MseI TTAA 1 cut(s) 859
MslI CAYNNNNRTG 1 cut(s) 344
MspA1I CMGCKG 2 cut(s) 281, 723
MspI CCGG 2 cut(s) 708, 715
MspR9I CCNGG 1 cut(s) 413
MvaI CCWGG 1 cut(s) 413
MvnI CGCG 1 cut(s) 732
MwoI GCNNNNNNNGC 3 cut(s) 374, 729, 732
NdeII GATC 1 cut(s) 717
NlaIII CATG 5 cut(s) 343, 437, 541, 687, 775
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 436
NspI RCATGY 1 cut(s) 541
PagI TCATGA 1 cut(s) 339
PaqCI CACCTGC 1 cut(s) 458
PciI ACATGT 1 cut(s) 537
PdmI GAANNNNTTC 1 cut(s) 842
PfeI GAWTC 2 cut(s) 242, 353
PkrI GCNGC 6 cut(s) 280, 316, 429, 466, 725, 734
PscI ACATGT 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 3 cut(s) 4, 608, 705
PstI CTGCAG 1 cut(s) 469
PstNI CAGNNNCTG 1 cut(s) 782
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 3 cut(s) 42, 657, 749
RsaNI GTAC 3 cut(s) 41, 656, 748
RseI CAYNNNNRTG 1 cut(s) 344
SaqAI TTAA 1 cut(s) 859
SatI GCNGC 6 cut(s) 279, 315, 428, 465, 724, 733
Sau3AI GATC 1 cut(s) 717
Sau96I GGNCC 3 cut(s) 4, 608, 705
ScaI AGTACT 2 cut(s) 42, 749
ScrFI CCNGG 1 cut(s) 413
SduI GDGCHC 1 cut(s) 391
SfaNI GCATC 2 cut(s) 79, 187
SfcI CTRYAG 1 cut(s) 465
SinI GGWCC 2 cut(s) 608, 705
SmiMI CAYNNNNRTG 1 cut(s) 344
Sse9I AATT 8 cut(s) 24, 61, 122, 130, 233, 324, 420, 567
SsiI CCGC 4 cut(s) 723, 726, 732, 735
SspMI CTAG 2 cut(s) 20, 330
StyD4I CCNGG 1 cut(s) 411
StyI CCWWGG 1 cut(s) 503
TaaI ACNGT 3 cut(s) 186, 403, 752
TaqI TCGA 1 cut(s) 85
TaqII GACCGA 1 cut(s) 159
TasI AATT 8 cut(s) 24, 61, 122, 130, 233, 324, 420, 567
TatI WGTACW 3 cut(s) 40, 655, 747
TauI GCSGC 2 cut(s) 726, 735
TfiI GAWTC 2 cut(s) 242, 353
Tru1I TTAA 1 cut(s) 859
Tru9I TTAA 1 cut(s) 859
TscAI CASTG 2 cut(s) 406, 585
TseFI GTSAC 1 cut(s) 436
TseI GCWGC 4 cut(s) 278, 314, 427, 464
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 3 cut(s) 81, 312, 422
TspRI CASTG 2 cut(s) 406, 585
VpaK11BI GGWCC 2 cut(s) 608, 705
XapI RAATTY 2 cut(s) 24, 233
XbaI TCTAGA 1 cut(s) 19
XceI RCATGY 1 cut(s) 541
XmiI GTMKAC 2 cut(s) 677, 754
XmnI GAANNNNTTC 1 cut(s) 842
XspI CTAG 2 cut(s) 20, 330
ZrmI AGTACT 2 cut(s) 42, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.