MD16G1058300.v1.1

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0003407
Physical Location & Seq
Reverse (-)
4157904 .. 4159169
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1058300.v1.1.491

Sequence Viewer

Length: 759 bp
ATGGGGAAAATAGGCACAAAATTGCCTAATTTCTGCCTAAACAGGATTAGGCCACACGTGAGGGTTCGTTCACCACCGATACAGTCCAAGCCAGATGCTTCAGATGTCGCTAAAAAAAGTAGTGATGGAAAATTTGAGGATTCTGGGAATGTTGGAGAAGAAGAGAAAGTGAAAGCAGCTGGTGGTGGTGGTGATGAGAACCCTAAAAAAGCTGGGTTGGTAATAGCTCGGAAAATCATGATTGTGGTTGATTCCAGCCTTGAAGCCAAAGGAGCCATCCAATGGGCTCTCTCTCACACTGTGCAAAGCCAGGATAAAATTGTGCTGCTTCATGTCACCAAATCTTCAAACTCAAAACAAGCTAAAGGTGAGGAGGCCAGCAAGGAGATAGCACCATCTCCAAGGGCTTATTCACTTGTCCATTCTTTGAGGAACATGTGTCAGTTGAAGAGACCAGAGGTAGAAATTGAGGTTGCAGTGGTGGTGGAAGGGAATAAGGAGAAAGGTCCAACAATACTGGAAGAGGCAAAGAAACAAGAAGTGGGACTGCTTGTTCTGGGGCAGAAAAAGAAGTCTACCACATGGCGTCTGCTGATGATGTGGGCCGGCAACCGGGTCGGTGGCGGCTGCGGCGGTGTGGTGGAGTACTGTATACAAAATGCCAGTTGCATGGCAGTTGCTGTGAGGAGGAAAAGCAGGAAGGTTGGAGGGTATTTGATTACTACAAAGCGCCAGAAAGATTTCTGGCTATTGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

253

Amino Acids

27.41

Weight (kDa)

9.76

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 77 - 229 4.7e-17 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 282
AccI GTMKAC 2 cut(s) 575, 652
AciI CCGC 3 cut(s) 624, 630, 633
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 84
AcvI CACGTG 1 cut(s) 58
AcyI GRCGYC 1 cut(s) 586
AdeI CACNNNGTG 1 cut(s) 301
AfaI GTAC 1 cut(s) 647
AfiI CCNNNNNNNGG 2 cut(s) 282, 612
AflIII ACRYGT 2 cut(s) 55, 435
AgsI TTSAA 3 cut(s) 263, 348, 448
AjnI CCWGG 1 cut(s) 309
AjuI GAANNNNNNNTTGG 2 cut(s) 394, 426
AloI GAACNNNNNNTCC 2 cut(s) 537, 569
AluBI AGCT 4 cut(s) 179, 212, 227, 362
AluI AGCT 4 cut(s) 179, 212, 227, 362
Alw26I GTCTC 1 cut(s) 445
AlwNI CAGNNNCTG 1 cut(s) 680
AoxI GGCC 4 cut(s) 50, 375, 603, 753
ApeKI GCWGC 3 cut(s) 176, 325, 627
ApoI RAATTY 1 cut(s) 131
Asp700I GAANNNNTTC 1 cut(s) 740
AspLEI GCGC 1 cut(s) 732
AspS9I GGNCC 2 cut(s) 506, 603
AsuC2I CCSGG 1 cut(s) 614
AsuHPI GGTGA 4 cut(s) 63, 203, 328, 380
AvaII GGWCC 1 cut(s) 506
BanII GRGCYC 1 cut(s) 289
BbrPI CACGTG 1 cut(s) 58
BbvI GCAGC 3 cut(s) 188, 312, 614
BccI CCATC 3 cut(s) 119, 284, 403
BcgI CGANNNNNNTGC 2 cut(s) 598, 632
BciT130I CCWGG 1 cut(s) 311
BcnI CCSGG 1 cut(s) 614
BcoDI GTCTC 1 cut(s) 445
BfoI RGCGCY 1 cut(s) 733
BisI GCNGC 5 cut(s) 177, 326, 625, 628, 631
BlsI GCNGC 5 cut(s) 178, 327, 626, 629, 632
BmcAI AGTACT 1 cut(s) 647
Bme1390I CCNGG 2 cut(s) 311, 614
Bme18I GGWCC 1 cut(s) 506
BmgT120I GGNCC 2 cut(s) 506, 603
BmiI GGNNCC 1 cut(s) 274
BmrFI CCNGG 2 cut(s) 311, 614
BmsI GCATC 1 cut(s) 85
BpuMI CCSGG 1 cut(s) 614
BsaAI YACGTR 1 cut(s) 58
BsaHI GRCGYC 1 cut(s) 586
BsaI GGTCTC 1 cut(s) 445
BsaJI CCNNGG 1 cut(s) 401
Bsc4I CCNNNNNNNGG 2 cut(s) 282, 612
Bse118I RCCGGY 1 cut(s) 605
Bse1I ACTGG 2 cut(s) 522, 663
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 1 cut(s) 401
BseGI GGATG 1 cut(s) 276
BseLI CCNNNNNNNGG 2 cut(s) 282, 612
BseNI ACTGG 2 cut(s) 522, 663
BseRI GAGGAG 2 cut(s) 386, 700
BseXI GCAGC 3 cut(s) 188, 312, 614
BseYI CCCAGC 1 cut(s) 212
BshFI GGCC 4 cut(s) 52, 377, 605, 755
BsiSI CCGG 2 cut(s) 606, 613
BslFI GGGAC 1 cut(s) 558
BslI CCNNNNNNNGG 2 cut(s) 282, 612
BsmAI GTCTC 1 cut(s) 445
BsmFI GGGAC 1 cut(s) 558
BsnI GGCC 4 cut(s) 52, 377, 605, 755
Bso31I GGTCTC 1 cut(s) 445
Bsp1286I GDGCHC 1 cut(s) 289
BspACI CCGC 3 cut(s) 624, 630, 633
BspANI GGCC 4 cut(s) 52, 377, 605, 755
BspHI TCATGA 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 274
BspTNI GGTCTC 1 cut(s) 445
BsrFI RCCGGY 1 cut(s) 605
BsrI ACTGG 2 cut(s) 522, 663
BssAI RCCGGY 1 cut(s) 605
BssECI CCNNGG 1 cut(s) 401
BssNAI GTATAC 1 cut(s) 653
BssNI GRCGYC 1 cut(s) 586
BssT1I CCWWGG 1 cut(s) 401
Bst1107I GTATAC 1 cut(s) 653
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 3 cut(s) 84, 301, 650
Bst6I CTCTTC 3 cut(s) 156, 443, 516
BstACI GRCGYC 1 cut(s) 586
BstBAI YACGTR 1 cut(s) 58
BstC8I GCNNGC 2 cut(s) 379, 607
BstF5I GGATG 1 cut(s) 276
BstH2I RGCGCY 1 cut(s) 733
BstHHI GCGC 1 cut(s) 732
BstMAI GTCTC 1 cut(s) 445
BstMWI GCNNNNNNNGC 2 cut(s) 272, 630
BstNI CCWGG 1 cut(s) 311
BstNSI RCATGY 1 cut(s) 439
BstSCI CCNGG 2 cut(s) 309, 612
BstV1I GCAGC 3 cut(s) 188, 312, 614
BstXI CCANNNNNNTGG 1 cut(s) 670
BstZ17I GTATAC 1 cut(s) 653
BsuRI GGCC 4 cut(s) 52, 377, 605, 755
BtsCI GGATG 1 cut(s) 276
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 2 cut(s) 297, 483
Cac8I GCNNGC 2 cut(s) 379, 607
CaiI CAGNNNCTG 1 cut(s) 680
CciI TCATGA 1 cut(s) 237
CfoI GCGC 1 cut(s) 732
Cfr10I RCCGGY 1 cut(s) 605
Cfr13I GGNCC 2 cut(s) 506, 603
CseI GACGC 1 cut(s) 575
Csp6I GTAC 1 cut(s) 646
CviAII CATG 5 cut(s) 238, 332, 436, 582, 670
CviQI GTAC 1 cut(s) 646
DraIII CACNNNGTG 1 cut(s) 301
Eam1104I CTCTTC 3 cut(s) 156, 443, 516
EarI CTCTTC 3 cut(s) 156, 443, 516
Eco130I CCWWGG 1 cut(s) 401
Eco24I GRGCYC 1 cut(s) 289
Eco31I GGTCTC 1 cut(s) 445
Eco47I GGWCC 1 cut(s) 506
Eco57I CTGAAG 1 cut(s) 84
Eco72I CACGTG 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 309
EcoT14I CCWWGG 1 cut(s) 401
EcoT38I GRGCYC 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 401
FaeI CATG 5 cut(s) 241, 335, 439, 585, 673
FaiI YATR 6 cut(s) 239, 333, 437, 583, 653, 671
FaqI GGGAC 1 cut(s) 558
FatI CATG 5 cut(s) 237, 331, 435, 581, 669
FblI GTMKAC 2 cut(s) 575, 652
Fnu4HI GCNGC 5 cut(s) 177, 326, 625, 628, 631
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 5 cut(s) 177, 326, 625, 628, 631
GlaI GCGC 1 cut(s) 731
GluI GCNGC 5 cut(s) 177, 326, 625, 628, 631
GsaI CCCAGC 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 733
HaeIII GGCC 4 cut(s) 52, 377, 605, 755
HapII CCGG 2 cut(s) 606, 613
HgaI GACGC 1 cut(s) 575
HhaI GCGC 1 cut(s) 732
Hin1I GRCGYC 1 cut(s) 586
Hin1II CATG 5 cut(s) 241, 335, 439, 585, 673
Hin6I GCGC 1 cut(s) 730
HinP1I GCGC 1 cut(s) 730
HinfI GANTC 2 cut(s) 140, 251
HpaII CCGG 2 cut(s) 606, 613
HphI GGTGA 4 cut(s) 63, 203, 328, 380
Hpy166II GTNNAC 3 cut(s) 71, 576, 653
Hpy188I TCNGA 2 cut(s) 103, 231
Hpy188III TCNNGA 1 cut(s) 238
Hpy8I GTNNAC 3 cut(s) 71, 576, 653
HpyAV CCTTC 2 cut(s) 482, 694
HpyCH4III ACNGT 3 cut(s) 84, 301, 650
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 3 cut(s) 304, 476, 669
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 630
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 586
Hsp92II CATG 5 cut(s) 241, 335, 439, 585, 673
HspAI GCGC 1 cut(s) 730
KroI GCCGGC 1 cut(s) 605
KroNI GCCGGC 1 cut(s) 607
LmnI GCTCC 1 cut(s) 272
Lsp1109I GCAGC 3 cut(s) 188, 312, 614
LweI GCATC 1 cut(s) 85
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 334
MboII GAAGA 5 cut(s) 170, 173, 336, 460, 533
MhlI GDGCHC 1 cut(s) 289
MluCI AATT 5 cut(s) 20, 28, 131, 318, 465
MmeI TCCRAC 3 cut(s) 133, 533, 685
MroNI GCCGGC 1 cut(s) 605
MroXI GAANNNNTTC 1 cut(s) 740
MslI CAYNNNNRTG 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 2 cut(s) 606, 613
MspR9I CCNGG 2 cut(s) 311, 614
MvaI CCWGG 1 cut(s) 311
MwoI GCNNNNNNNGC 2 cut(s) 272, 630
NaeI GCCGGC 1 cut(s) 607
NciI CCSGG 1 cut(s) 614
NgoMIV GCCGGC 1 cut(s) 605
NlaIII CATG 5 cut(s) 241, 335, 439, 585, 673
NlaIV GGNNCC 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 334
NspI RCATGY 1 cut(s) 439
PagI TCATGA 1 cut(s) 237
PciI ACATGT 1 cut(s) 435
PdiI GCCGGC 1 cut(s) 607
PdmI GAANNNNTTC 1 cut(s) 740
PfeI GAWTC 2 cut(s) 140, 251
PflMI CCANNNNNTGG 1 cut(s) 282
PkrI GCNGC 5 cut(s) 178, 327, 626, 629, 632
PmaCI CACGTG 1 cut(s) 58
PmlI CACGTG 1 cut(s) 58
Ppu21I YACGTR 1 cut(s) 58
PscI ACATGT 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 309
PspCI CACGTG 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 274
PspPI GGNCC 2 cut(s) 506, 603
PstNI CAGNNNCTG 1 cut(s) 680
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 1 cut(s) 647
RsaNI GTAC 1 cut(s) 646
RseI CAYNNNNRTG 1 cut(s) 242
SatI GCNGC 5 cut(s) 177, 326, 625, 628, 631
Sau96I GGNCC 2 cut(s) 506, 603
ScaI AGTACT 1 cut(s) 647
ScrFI CCNGG 2 cut(s) 311, 614
SduI GDGCHC 1 cut(s) 289
SfaNI GCATC 1 cut(s) 85
SinI GGWCC 1 cut(s) 506
SmiMI CAYNNNNRTG 1 cut(s) 242
Sse9I AATT 5 cut(s) 20, 28, 131, 318, 465
SsiI CCGC 3 cut(s) 624, 630, 633
StyD4I CCNGG 2 cut(s) 309, 612
StyI CCWWGG 1 cut(s) 401
TaaI ACNGT 3 cut(s) 84, 301, 650
TaiI ACGT 1 cut(s) 60
TasI AATT 5 cut(s) 20, 28, 131, 318, 465
TatI WGTACW 1 cut(s) 645
TauI GCSGC 2 cut(s) 627, 633
TfiI GAWTC 2 cut(s) 140, 251
TscAI CASTG 2 cut(s) 304, 483
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 3 cut(s) 176, 325, 627
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 1 cut(s) 320
TspRI CASTG 2 cut(s) 304, 483
Van91I CCANNNNNTGG 1 cut(s) 282
VpaK11BI GGWCC 1 cut(s) 506
XapI RAATTY 1 cut(s) 131
XceI RCATGY 1 cut(s) 439
XmiI GTMKAC 2 cut(s) 575, 652
XmnI GAANNNNTTC 1 cut(s) 740
ZrmI AGTACT 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.