Rh7DG059900

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003407
Physical Location & Seq
Forward (+)
4621159 .. 4622427
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG059900.1

Sequence Viewer

Length: 588 bp
ATGAGTAGGAGATATGCAAGATTGTGTGTTGGCCGTGGCGCGTTTTGTTTTCCGGTCCATTCCCGGACTCCGGGATCAAAATCGAAACAGAAACCCGCCTCTAGAAGCATTAGACGTCGTTCCTCCTCCTCTTCCATCAAAACTGGCCATTTGAAAACAGATCAGTTTCTGAGTAATAGCAGTGACGACTTTGGTGAAGAAATCAGAGTAAAAAATGGGGATGAGATTGGGAACAAGATAATGGTTGTTGTGGATTCGAGCCTCGAAGCCAAAGGAGCTCTTGAATGGGCACTGTCCCACACTGTTCAAATCCAAGACACCATTGTGCTTCTTCATGTAGCTCAGCCCTGCAAACAAGACTCAAATGCGAAGAAGCTTAATTTAAGAGCTTTTGAGCTTCTTCACTCTATGAAAAAAGACTGTCAGAGGAGAAGGCCTGGGGTGGAAGTTGAGGTAGCATTGCTTGAAGGGAACGAAGGAGGTGCAATAATTGTGGAAGAAGCAAAGAAACAAAAGATTAAGAATCCAATTGACTTCGTATCGTGTGCTGGCGACAACCATCAGTTGACACCAACTGCACAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

195

Amino Acids

21.58

Weight (kDa)

9.48

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 79 - 172 8e-09 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 118
AccII CGCG 1 cut(s) 41
AciI CCGC 1 cut(s) 96
AclWI GGATC 1 cut(s) 82
AcoI YGGCCR 2 cut(s) 31, 145
AcyI GRCGYC 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 4 cut(s) 154, 284, 308, 467
AjnI CCWGG 1 cut(s) 436
AleI CACNNNNGTG 1 cut(s) 323
AluBI AGCT 5 cut(s) 278, 341, 376, 389, 397
AluI AGCT 5 cut(s) 278, 341, 376, 389, 397
Alw21I GWGCWC 1 cut(s) 280
AlwI GGATC 1 cut(s) 82
AlwNI CAGNNNCTG 1 cut(s) 169
AoxI GGCC 3 cut(s) 31, 145, 434
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 55
AsuC2I CCSGG 2 cut(s) 64, 72
AsuHPI GGTGA 1 cut(s) 206
AvaII GGWCC 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 292
BalI TGGCCA 1 cut(s) 147
BanII GRGCYC 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 280
BccI CCATC 2 cut(s) 143, 567
BceAI ACGGC 1 cut(s) 18
BcgI CGANNNNNNTGC 2 cut(s) 464, 498
BciT130I CCWGG 1 cut(s) 438
BcnI CCSGG 2 cut(s) 64, 72
BfaI CTAG 1 cut(s) 102
BlpI GCTNAGC 1 cut(s) 342
Bme1390I CCNGG 3 cut(s) 64, 72, 438
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmrFI CCNGG 3 cut(s) 64, 72, 438
Bpu1102I GCTNAGC 1 cut(s) 342
BpuMI CCSGG 2 cut(s) 64, 72
BsaBI GATNNNNATC 1 cut(s) 79
BsaHI GRCGYC 1 cut(s) 115
BsaJI CCNNGG 2 cut(s) 34, 437
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 148
Bse3DI GCAATG 1 cut(s) 458
Bse8I GATNNNNATC 1 cut(s) 79
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 2 cut(s) 34, 437
BseGI GGATG 1 cut(s) 226
BseJI GATNNNNATC 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMI GCAATG 1 cut(s) 458
BseMII CTCAG 2 cut(s) 161, 356
BseNI ACTGG 1 cut(s) 148
BseRI GAGGAG 3 cut(s) 115, 118, 442
BseSI GKGCMC 1 cut(s) 292
BsgI GTGCAG 1 cut(s) 561
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 3 cut(s) 33, 147, 436
BsiHKAI GWGCWC 1 cut(s) 280
BsiSI CCGG 3 cut(s) 53, 64, 71
BslFI GGGAC 1 cut(s) 280
BslI CCNNNNNNNGG 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 280
BsnI GGCC 3 cut(s) 33, 147, 436
Bsp1286I GDGCHC 2 cut(s) 280, 292
Bsp143I GATC 2 cut(s) 74, 160
Bsp1720I GCTNAGC 1 cut(s) 342
BspACI CCGC 1 cut(s) 96
BspANI GGCC 3 cut(s) 33, 147, 436
BspCNI CTCAG 2 cut(s) 162, 355
BspFNI CGCG 1 cut(s) 41
BspPI GGATC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 458
BsrI ACTGG 1 cut(s) 148
BssECI CCNNGG 2 cut(s) 34, 437
BssMI GATC 2 cut(s) 74, 160
BssNI GRCGYC 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 3 cut(s) 294, 304, 422
Bst6I CTCTTC 1 cut(s) 136
BstACI GRCGYC 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 550
BstDEI CTNAG 2 cut(s) 170, 342
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 1 cut(s) 226
BstFNI CGCG 1 cut(s) 41
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 2 cut(s) 77, 163
BstMBI GATC 2 cut(s) 74, 160
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstNI CCWGG 1 cut(s) 438
BstSCI CCNGG 3 cut(s) 62, 70, 436
BstSLI GKGCMC 1 cut(s) 292
BstUI CGCG 1 cut(s) 41
BsuRI GGCC 3 cut(s) 33, 147, 436
BtgI CCRYGG 1 cut(s) 34
BtsCI GGATG 1 cut(s) 226
BtsI GCAGTG 1 cut(s) 187
BtsIMutI CAGTG 3 cut(s) 187, 290, 300
Cac8I GCNNGC 1 cut(s) 550
CaiI CAGNNNCTG 1 cut(s) 169
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 55
CspCI CAANNNNNGTGG 2 cut(s) 474, 509
CviAII CATG 1 cut(s) 335
DdeI CTNAG 2 cut(s) 170, 342
DpnI GATC 2 cut(s) 76, 162
DpnII GATC 2 cut(s) 74, 160
EaeI YGGCCR 2 cut(s) 31, 145
Eam1104I CTCTTC 1 cut(s) 136
EarI CTCTTC 1 cut(s) 136
Ecl136II GAGCTC 1 cut(s) 278
Eco147I AGGCCT 1 cut(s) 436
Eco24I GRGCYC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 55
Eco53kI GAGCTC 1 cut(s) 278
EcoICRI GAGCTC 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 436
EcoT38I GRGCYC 1 cut(s) 280
FaeI CATG 1 cut(s) 338
FaiI YATR 3 cut(s) 15, 336, 410
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FaqI GGGAC 1 cut(s) 280
FatI CATG 1 cut(s) 334
FauI CCCGC 1 cut(s) 103
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 280
FspBI CTAG 1 cut(s) 102
GlaI GCGC 1 cut(s) 40
HaeIII GGCC 3 cut(s) 33, 147, 436
HapII CCGG 3 cut(s) 53, 64, 71
HhaI GCGC 1 cut(s) 41
Hin1I GRCGYC 1 cut(s) 115
Hin1II CATG 1 cut(s) 338
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HincII GTYRAC 1 cut(s) 567
HindII GTYRAC 1 cut(s) 567
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 4 cut(s) 67, 254, 359, 523
HpaII CCGG 3 cut(s) 53, 64, 71
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 567
Hpy188I TCNGA 3 cut(s) 171, 206, 426
Hpy188III TCNNGA 2 cut(s) 102, 281
Hpy8I GTNNAC 1 cut(s) 567
Hpy99I CGWCG 1 cut(s) 120
HpyAV CCTTC 3 cut(s) 426, 461, 470
HpyCH4III ACNGT 3 cut(s) 294, 304, 422
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 4 cut(s) 17, 351, 485, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 2 cut(s) 170, 342
HpySE526I ACGT 1 cut(s) 115
Hsp92I GRCGYC 1 cut(s) 115
Hsp92II CATG 1 cut(s) 338
HspAI GCGC 1 cut(s) 39
Kzo9I GATC 2 cut(s) 74, 160
LmnI GCTCC 1 cut(s) 275
LpnPI CCDG 8 cut(s) 66, 77, 84, 129, 361, 423, 450, 534
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 182
MalI GATC 2 cut(s) 76, 162
MboI GATC 2 cut(s) 74, 160
MboII GAAGA 6 cut(s) 123, 209, 323, 382, 392, 509
MfeI CAATTG 1 cut(s) 528
MhlI GDGCHC 2 cut(s) 280, 292
MlsI TGGCCA 1 cut(s) 147
MluCI AATT 3 cut(s) 379, 489, 528
MluNI TGGCCA 1 cut(s) 147
MlyI GAGTC 2 cut(s) 61, 353
MnlI CCTC 8 cut(s) 109, 133, 136, 139, 272, 420, 445, 473
Mox20I TGGCCA 1 cut(s) 147
MscI TGGCCA 1 cut(s) 147
MseI TTAA 4 cut(s) 378, 383, 519, 586
MslI CAYNNNNRTG 1 cut(s) 323
Msp20I TGGCCA 1 cut(s) 147
MspI CCGG 3 cut(s) 53, 64, 71
MspR9I CCNGG 3 cut(s) 64, 72, 438
MunI CAATTG 1 cut(s) 528
MvaI CCWGG 1 cut(s) 438
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 275
NciI CCSGG 2 cut(s) 64, 72
NdeII GATC 2 cut(s) 74, 160
NlaIII CATG 1 cut(s) 338
NmuCI GTSAC 1 cut(s) 182
OliI CACNNNNGTG 1 cut(s) 323
PceI AGGCCT 1 cut(s) 436
PfeI GAWTC 2 cut(s) 254, 523
PfoI TCCNGGA 2 cut(s) 62, 70
PleI GAGTC 2 cut(s) 61, 353
PpsI GAGTC 2 cut(s) 61, 353
Psp124BI GAGCTC 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 436
PspGI CCWGG 1 cut(s) 436
PspPI GGNCC 1 cut(s) 55
PstNI CAGNNNCTG 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 323
SacI GAGCTC 1 cut(s) 280
SaqAI TTAA 4 cut(s) 378, 383, 519, 586
Sau3AI GATC 2 cut(s) 74, 160
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 2 cut(s) 61, 353
ScrFI CCNGG 3 cut(s) 64, 72, 438
SduI GDGCHC 2 cut(s) 280, 292
SetI ASST 8 cut(s) 118, 280, 343, 378, 391, 399, 456, 484
SinI GGWCC 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 3 cut(s) 379, 489, 528
SseBI AGGCCT 1 cut(s) 436
SsiI CCGC 1 cut(s) 96
SspMI CTAG 1 cut(s) 102
SstI GAGCTC 1 cut(s) 280
StuI AGGCCT 1 cut(s) 436
StyD4I CCNGG 3 cut(s) 62, 70, 436
TaaI ACNGT 3 cut(s) 294, 304, 422
TaiI ACGT 1 cut(s) 118
TaqI TCGA 3 cut(s) 83, 257, 264
TasI AATT 3 cut(s) 379, 489, 528
TfiI GAWTC 2 cut(s) 254, 523
Tru1I TTAA 4 cut(s) 378, 383, 519, 586
Tru9I TTAA 4 cut(s) 378, 383, 519, 586
TscAI CASTG 3 cut(s) 187, 297, 307
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 2 cut(s) 323, 425
TspRI CASTG 3 cut(s) 187, 297, 307
VpaK11BI GGWCC 1 cut(s) 55
XbaI TCTAGA 1 cut(s) 101
XspI CTAG 1 cut(s) 102
ZraI GACGTC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.