FvH4_5g13480

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003407
Physical Location & Seq
Reverse (-)
7613892 .. 7615270
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13480.t1

Sequence Viewer

Length: 831 bp
ATGCATACTAGACTAAATTATTCCATTCCTCGTATATATATAACAGACCAAGTTAGAACTAAGCTTCCAACCAGAACCAAAATCATCATAATCATAATGAGTAGGAGATATGCAAGACTGTGTGTTGGCCGAGGCGTGTTTTGTTTTCCGGTCCATTCCCCGACTCTGGGATCAAAATCGAAACCCAAACCCGCCTCTAGAAGCATTAGACGTTCCTCCTCCTATTCCATCAAAACAGATCAGTTTCTGAGCAATAGCAGTGATGATTTTGGTGAAGAAATCAGAGTCAAAAATGGGGATGAGATGGGGAACAAGATAATGGTGGTTGTGGATTCGAGCCTTGAAGCCAAAGGAGCTCTTGAATGGGCACTGTCCCACACTGTTCAAACTCAGGACACCATTGTGCTTCTTCATGTAGCTCAGCCCTGCAAACAAGGTGCAGACCCAAATGCGAAGAAGCTTAACTTAAGAGCTTTTGAGGTTCTTCACTCTATGAAAAAAGAATGTCAAAGGAGGAGGCCTGGGGTGGAAGTTGAGGTAGCATTGCTTGAAGGGAAGGAAAGAGGTGCAATAATTGTGGAAGAAGCAAAGAAACAAAAGGTGTCTCTACTTGTTCTTGGGCAAAGAAGAGAGAGGTCAATGTGGTGGGAGCTAATCAAGAGGTGCTGGACAAGTAGGCGAAGGAGAAGAACATCCGGAGGCGGTGAGGTTGTGGAATACTGCATACAAAATGCCGGATGCATGACGATTGCGGTCAGGAGAAAGAGCAGAAGACTTGGAGGGTACTTGATCACCACCAAGCTTCACAAGAACTTCTGGCTTCTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

277

Amino Acids

31.52

Weight (kDa)

10.31

Isoelectric Point (pI)

53.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 104 - 253 5.7e-17 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 695
AciI CCGC 3 cut(s) 192, 702, 752
AclWI GGATC 1 cut(s) 178
AcoI YGGCCR 1 cut(s) 127
AfaI GTAC 1 cut(s) 785
AfiI CCNNNNNNNGG 2 cut(s) 166, 167
AflII CTTAAG 1 cut(s) 466
AgsI TTSAA 4 cut(s) 344, 362, 386, 551
AjnI CCWGG 1 cut(s) 520
AleI CACNNNNGTG 1 cut(s) 401
AloI GAACNNNNNNTCC 2 cut(s) 49, 81
AluBI AGCT 7 cut(s) 64, 356, 419, 460, 473, 652, 802
AluI AGCT 7 cut(s) 64, 356, 419, 460, 473, 652, 802
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 1 cut(s) 609
AlwI GGATC 1 cut(s) 178
AlwNI CAGNNNCTG 1 cut(s) 247
Aor13HI TCCGGA 1 cut(s) 695
AoxI GGCC 2 cut(s) 127, 518
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 3 cut(s) 284, 716, 784
AvaII GGWCC 1 cut(s) 151
BaeGI GKGCMC 1 cut(s) 370
BanII GRGCYC 1 cut(s) 358
BbsI GAAGAC 1 cut(s) 778
Bbv12I GWGCWC 1 cut(s) 358
BccI CCATC 2 cut(s) 236, 298
BciT130I CCWGG 1 cut(s) 522
BclI TGATCA 1 cut(s) 789
BcoDI GTCTC 1 cut(s) 609
BfaI CTAG 2 cut(s) 9, 198
BfrI CTTAAG 1 cut(s) 466
BlpI GCTNAGC 1 cut(s) 420
Bme1390I CCNGG 1 cut(s) 522
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 151
BmrFI CCNGG 1 cut(s) 522
BmsI GCATC 1 cut(s) 728
BpiI GAAGAC 1 cut(s) 778
Bpu1102I GCTNAGC 1 cut(s) 420
BsaBI GATNNNNATC 1 cut(s) 175
BsaJI CCNNGG 2 cut(s) 130, 521
BsaWI WCCGGW 2 cut(s) 148, 695
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 167
Bse3DI GCAATG 1 cut(s) 542
Bse8I GATNNNNATC 1 cut(s) 175
BseAI TCCGGA 1 cut(s) 695
BseBI CCWGG 1 cut(s) 522
BseDI CCNNGG 2 cut(s) 130, 521
BseGI GGATG 3 cut(s) 304, 692, 743
BseJI GATNNNNATC 1 cut(s) 175
BseLI CCNNNNNNNGG 2 cut(s) 166, 167
BseMI GCAATG 1 cut(s) 542
BseMII CTCAG 3 cut(s) 239, 404, 434
BseRI GAGGAG 2 cut(s) 208, 529
BseSI GKGCMC 1 cut(s) 370
BsgI GTGCAG 1 cut(s) 459
BshFI GGCC 2 cut(s) 129, 520
BsiHKAI GWGCWC 1 cut(s) 358
BsiSI CCGG 3 cut(s) 149, 696, 735
BslFI GGGAC 1 cut(s) 358
BslI CCNNNNNNNGG 2 cut(s) 166, 167
BsmAI GTCTC 1 cut(s) 609
BsmFI GGGAC 1 cut(s) 358
BsnI GGCC 2 cut(s) 129, 520
Bsp1286I GDGCHC 2 cut(s) 358, 370
Bsp13I TCCGGA 1 cut(s) 695
Bsp143I GATC 3 cut(s) 170, 238, 789
Bsp1720I GCTNAGC 1 cut(s) 420
BspACI CCGC 3 cut(s) 192, 702, 752
BspANI GGCC 2 cut(s) 129, 520
BspCNI CTCAG 3 cut(s) 240, 403, 433
BspEI TCCGGA 1 cut(s) 695
BspPI GGATC 1 cut(s) 178
BspTI CTTAAG 1 cut(s) 466
BsrDI GCAATG 1 cut(s) 542
BssECI CCNNGG 2 cut(s) 130, 521
BssMI GATC 3 cut(s) 170, 238, 789
Bst2UI CCWGG 1 cut(s) 522
Bst4CI ACNGT 3 cut(s) 120, 372, 382
Bst6I CTCTTC 1 cut(s) 622
BstAFI CTTAAG 1 cut(s) 466
BstDEI CTNAG 4 cut(s) 60, 248, 390, 420
BstF5I GGATG 3 cut(s) 304, 692, 743
BstKTI GATC 3 cut(s) 173, 241, 792
BstMAI GTCTC 1 cut(s) 609
BstMBI GATC 3 cut(s) 170, 238, 789
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstNI CCWGG 1 cut(s) 522
BstSCI CCNGG 1 cut(s) 520
BstSLI GKGCMC 1 cut(s) 370
BstV2I GAAGAC 1 cut(s) 778
BsuRI GGCC 2 cut(s) 129, 520
BtsCI GGATG 3 cut(s) 304, 692, 743
BtsI GCAGTG 1 cut(s) 265
BtsIMutI CAGTG 3 cut(s) 265, 368, 378
CaiI CAGNNNCTG 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 784
CspCI CAANNNNNGTGG 2 cut(s) 558, 593
CviAII CATG 2 cut(s) 413, 742
CviQI GTAC 1 cut(s) 784
DdeI CTNAG 4 cut(s) 60, 248, 390, 420
DpnI GATC 3 cut(s) 172, 240, 791
DpnII GATC 3 cut(s) 170, 238, 789
EaeI YGGCCR 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 622
EarI CTCTTC 1 cut(s) 622
Ecl136II GAGCTC 1 cut(s) 356
Eco147I AGGCCT 1 cut(s) 520
Eco24I GRGCYC 1 cut(s) 358
Eco47I GGWCC 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 356
EcoICRI GAGCTC 1 cut(s) 356
EcoRII CCWGG 1 cut(s) 520
EcoT22I ATGCAT 2 cut(s) 6, 743
EcoT38I GRGCYC 1 cut(s) 358
FaeI CATG 2 cut(s) 416, 745
FalI AAGNNNNNCTT 4 cut(s) 342, 374, 449, 481
FaqI GGGAC 1 cut(s) 358
FatI CATG 2 cut(s) 412, 741
FauI CCCGC 1 cut(s) 199
FbaI TGATCA 1 cut(s) 789
FokI GGATG 3 cut(s) 311, 679, 750
FriOI GRGCYC 1 cut(s) 358
FspBI CTAG 2 cut(s) 9, 198
HaeIII GGCC 2 cut(s) 129, 520
HapII CCGG 3 cut(s) 149, 696, 735
Hin1II CATG 2 cut(s) 416, 745
HindIII AAGCTT 3 cut(s) 62, 458, 800
HinfI GANTC 3 cut(s) 163, 285, 332
HpaII CCGG 3 cut(s) 149, 696, 735
HphI GGTGA 3 cut(s) 284, 716, 784
Hpy188I TCNGA 2 cut(s) 249, 284
Hpy188III TCNNGA 6 cut(s) 198, 359, 392, 658, 696, 757
HpyAV CCTTC 3 cut(s) 545, 550, 675
HpyCH4III ACNGT 3 cut(s) 120, 372, 382
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 7 cut(s) 4, 113, 429, 440, 569, 723, 741
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpyF3I CTNAG 4 cut(s) 60, 248, 390, 420
HpySE526I ACGT 1 cut(s) 211
Hsp92II CATG 2 cut(s) 416, 745
Kpn2I TCCGGA 1 cut(s) 695
Ksp22I TGATCA 1 cut(s) 789
Kzo9I GATC 3 cut(s) 170, 238, 789
LmnI GCTCC 2 cut(s) 353, 649
LweI GCATC 1 cut(s) 728
MaeI CTAG 2 cut(s) 9, 198
MaeII ACGT 1 cut(s) 211
MalI GATC 3 cut(s) 172, 240, 791
MboI GATC 3 cut(s) 170, 238, 789
MboII GAAGA 8 cut(s) 287, 401, 466, 476, 593, 639, 699, 783
MhlI GDGCHC 2 cut(s) 358, 370
MluCI AATT 2 cut(s) 16, 573
MlyI GAGTC 2 cut(s) 157, 294
MmeI TCCRAC 1 cut(s) 92
Mph1103I ATGCAT 2 cut(s) 6, 743
MroI TCCGGA 1 cut(s) 695
MseI TTAA 3 cut(s) 462, 467, 829
MslI CAYNNNNRTG 1 cut(s) 401
MspCI CTTAAG 1 cut(s) 466
MspI CCGG 3 cut(s) 149, 696, 735
MspR9I CCNGG 1 cut(s) 522
MvaI CCWGG 1 cut(s) 522
MwoI GCNNNNNNNGC 1 cut(s) 353
NdeII GATC 3 cut(s) 170, 238, 789
NlaIII CATG 2 cut(s) 416, 745
NmeAIII GCCGAG 1 cut(s) 155
NsiI ATGCAT 2 cut(s) 6, 743
OliI CACNNNNGTG 1 cut(s) 401
PceI AGGCCT 1 cut(s) 520
PfeI GAWTC 1 cut(s) 332
PleI GAGTC 2 cut(s) 157, 293
PpsI GAGTC 2 cut(s) 157, 293
Psp124BI GAGCTC 1 cut(s) 358
Psp6I CCWGG 1 cut(s) 520
PspGI CCWGG 1 cut(s) 520
PspPI GGNCC 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 247
RsaI GTAC 1 cut(s) 785
RsaNI GTAC 1 cut(s) 784
RseI CAYNNNNRTG 1 cut(s) 401
SacI GAGCTC 1 cut(s) 358
SaqAI TTAA 3 cut(s) 462, 467, 829
Sau3AI GATC 3 cut(s) 170, 238, 789
Sau96I GGNCC 1 cut(s) 151
SchI GAGTC 2 cut(s) 157, 294
ScrFI CCNGG 1 cut(s) 522
SduI GDGCHC 2 cut(s) 358, 370
SfaNI GCATC 1 cut(s) 728
SinI GGWCC 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 466
SmoI CTYRAG 1 cut(s) 466
Sse9I AATT 2 cut(s) 16, 573
SseBI AGGCCT 1 cut(s) 520
SsiI CCGC 3 cut(s) 192, 702, 752
SspMI CTAG 2 cut(s) 9, 198
SstI GAGCTC 1 cut(s) 358
StuI AGGCCT 1 cut(s) 520
StyD4I CCNGG 1 cut(s) 520
TaaI ACNGT 3 cut(s) 120, 372, 382
TaiI ACGT 1 cut(s) 214
TaqI TCGA 2 cut(s) 179, 335
TasI AATT 2 cut(s) 16, 573
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 3 cut(s) 462, 467, 829
Tru9I TTAA 3 cut(s) 462, 467, 829
TscAI CASTG 3 cut(s) 265, 375, 385
TspDTI ATGAA 2 cut(s) 401, 509
TspRI CASTG 3 cut(s) 265, 375, 385
Vha464I CTTAAG 1 cut(s) 466
VpaK11BI GGWCC 1 cut(s) 151
XbaI TCTAGA 1 cut(s) 197
XspI CTAG 2 cut(s) 9, 198
Zsp2I ATGCAT 2 cut(s) 6, 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.