Rroxscaffold_5G00378900

Nucleolar protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011043
Physical Location & Seq
Reverse (-)
59433462 .. 59439282
5821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00378900.1

Sequence Viewer

Length: 2877 bp
ATGGCGAAGAAGAAGTCCGGCCCAAACGCCGTAGCCATGAAGCACCAGTCCCCAAAACCCAACCCTTTCGCAACCAAATCGCCAAAGCTCAGTCGCTCCGACGACAACGCCACCACCAAGGAGACGAAGAAGAAGAAGAAGAACAGTAAATTAGGACCCAAGGCGATGGCTATGAAGGTCCAGCCCCCGAAACCCAACCCCTTCGAGACCATATGGTCCCGGAGGAAATTCGACGTCCTCGGAAAGAAGCGCAAAGGCGAAGAGCGCCGTATGGGCCTCGCTCGCTCTCAGGCCATCGAAAAGAGGAAGAAGACACTGCTGAAGGAGTACGAGCAGAGCGGGAAATCTTCGGTTTTTGTGGATAAGCGAATCGGAGAGGAAAATGATGAGCTTGATGAGTTTGATAAGGCCATTCGGCGTACTCAGCGCGAGCGTCAATTGAAGCAAAACAAGAAAAGCAAGTATAACTTATCAGATGGAGAGGAGGACGAGTTTGAGTTTCAGAGTCTTGGTGCATTGTCTCAGAGGGATGATTTTGATGATGATATGCGGCCCGAAGAGGACGAAGATGATGACGGTGGAGAAAGTGGTAAAAAAAGTTATCAATTTAATTCCGAGGATAAGGACGGGGATCTAAGTGACGGAAATGAAAATAGGCATAAAAGTGACAAGGAAAGATATGCTGAAATGATCTTAAAGTCCAAAAATTACAAGGCAGAAAAATCAAAGGAGAAGGATGAAAACAAAGATTTGATGGAAGAATTGGACAAAAAGTTCACCTCTGTAATTGCCTCGAAAGCTCTTACAAACAAGAGCTTCTCGACCGAATATATGAAGAAGCATGACGTTTCTGCTACTCAAATCTTTGGAACTTCTGAGCAAGAGAAATCGGACTCTTATGATAAACTTGAAAGAGAATTGGCAATGGAAAGACGTGCTCAACCCTCAAATAGGACAAAGACTCCTGAAGAGATAGCACAAGAAGAGAGGGAGCAACTTGAACTTTTGGAGGAAGAGAGACAGAAAAGGATGCATCCCACTGATGACTATAGTGATGAAGACATTGAAGACGCTGAGAAACCATCTACGCTGAGGCCAAGATCTATATCTGGAGATGATCTTGGTGATTCCTTCTCACTTGAGGAAGAACCAAGGACTAAAAAGGGTTGGGTTGATGAGATTCTCGAACGAAAAGATGCTAGTGATTCTGAGAGTGAAGGAGATGATTCTGGTTCTTCTGAGGATTCAGGAAGTCCTGAAGATTGTGGTGATGAGGGATCTGATGAAGATGATAGTGAAGGGGAAAGAGATATATTGAATAAGGACTGGGAACAGAGTGATGATGATAATCTTGACATAGACTTGGATGATGATGAAGAAGACTCTGACGAACATGAAAAGGATGATGAGGCTTATCAAAAAGAGCTGGAGCCAAGAGATCTGAAAAAGTTGAAAAGAAATGATGCTGTTCAAGCTAGTAAAAGTGATGATAAATCTTTAAATACAAAGAAATTACCAGCCAATAAACAATCTTCAACTCAGTCAGACCTCCCATACCTAATTGAAGCTCCAAAAAGCATGGAAGAGTTGGATGCCTTATTGGATAATCTTTCTAATGCTGACATTGCCTTGATAATCCATCGAATCCGGGCAAGCAGTGCAATCAAGCTTGCAGCAGAAAATAAGAAGAAAATGCAAGTATTTTATGGTTTACTTTTGCAATATTTTGCCACCTCAGCAAATAAAAAACCGCTGAATTTGGAATTACTAAATTTGCTGGTTAAGCCCTTGATGGAGATGAGCATGGAGACTCCGTATTTTGCTTCAATCTGTGCTCGTGAGAGGATACTACGCACTAGAACAAAATTTTGTGAGACTGTTAAGAACCCAGAAAGTAGTTGTTGGCCTGCTTCAAAGACATTGTTTCTCTTGAGGCTTTGGTCCCTGATATTTCCATGTTCAGACTTTCGTCATGTGGTCATGACTCCGGCAATATTTTTAATGTGTGAATATCTGACGCGTTGTCCCGTCTTGTCTGGTCGTGATGTTGCAGTTGGCTCGTTCTTATGCTCTCTGCTTCTCTCTATCACTAAGCAATCTCGGAAGTTCTGTCCTGAAGCAGTCACGTTTCTTCAAACATTGTTAACGGCGGCCAAAGAGAGAAAGCCAAAGTCAACTCAAGATTCTGAGATTGATCATCTTATGGAGTTAAAAGCACCCAGACCCCTTCTATATATACATGAATGTATAAATCGGATTGATCCACTTAATTTTCTCACAATTATGGACCTGCCAGAAGACTCGTTATTTTTCACCTCCGACAATTTCAGGTCTAGTGTGCTGGTGACTGTGATTGAAACTCTACGTGGATATGTTGGTATTTACGAAGGATTCAGTTCTTTCCCCGAAATATTTTTGCCGATTTCATCATTGGTGCTTGAATTGTCGGAACAAGAAAATATGCCAAGTGCATTAACTGACAAATTTAAAGAGGTTGCTGAACTGATTAAGACAAAAGCAGATAAACACTGCATGCAGCGGCAACCACTTCAGATGCGGAAGCAAAAGCCAGTGGCTATTAAAATGCTTAATCCAAAATTTGAGGAGAACTTTGTCAAGGGCAGAGACTACGATCCAGACCGTGAACGGGTTGAGAGAAAGAAGTTGAAGAAGCGTTTGACACAAGAAGGTAAAGGTGCTGTTCGCGAACTACGTAAAGATAATTATTTCTTACAGGAGCTGAAGTCGAGGGATAAGGCTCTGATGGAAGAAGAAAGAGCTGAGAAATATGGAAAAGCAAGACTTTTCCTTCAAGAGCAAGAACATGCTATGAAATCTGGGCAATTAGGAAAAGGCAGGGGGAAGAGAAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nop14

Protein Analysis

958

Amino Acids

110.25

Weight (kDa)

5.53

Isoelectric Point (pI)

54.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nop14 PF04147 64 - 942 2.5e-226 Nop14-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011043)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69070 AT1G69070
fragaria_vesca FvH4_4g29570 FvH4_4g29570 FvH4_4g29570
malus_domestica MD13G1058900.v1.1 MD16G1058200.v1.1
prunus_persica Prupe.1G290900_v2.0.a1
pyrus_communis pycom16g05090
rosa_chinensis RchiOBHm_Chr4g0437801
rosa_laevigata RLG00000006412
rosa_multiflora Rmu_sc0004193.1_g000019
rosa_roxburghii Rroxscaffold_5G00378900
rosa_rugosa Rorug04G0303800 Rorug04G0303800
rosa_samantha Rh4AG356100 Rh4BG366700 Rh4CG380700 Rh4DG361200
rosa_wichuraiana Rw4G031410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 214
AatII GACGTC 1 cut(s) 237
Acc36I ACCTGC 1 cut(s) 2298
AccBSI CCGCTC 1 cut(s) 339
AccII CGCG 3 cut(s) 429, 2020, 2706
AciI CCGC 6 cut(s) 339, 550, 1751, 2150, 2539, 2557
AclWI GGATC 4 cut(s) 639, 1285, 2255, 2627
AcoI YGGCCR 1 cut(s) 2151
AcsI RAATTY 6 cut(s) 227, 1756, 1771, 1865, 2483, 2597
AcuI CTGAAG 6 cut(s) 341, 987, 1278, 2136, 2534, 2762
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 2 cut(s) 329, 421
AfiI CCNNNNNNNGG 2 cut(s) 951, 2647
AflIII ACRYGT 1 cut(s) 2018
AhdI GACNNNNNGTC 1 cut(s) 2022
AjiI CACGTC 1 cut(s) 935
AloI GAACNNNNNNTCC 2 cut(s) 758, 790
Alw21I GWGCWC 2 cut(s) 940, 1837
Alw26I GTCTC 7 cut(s) 116, 200, 525, 1012, 1802, 1868, 2619
AlwI GGATC 4 cut(s) 639, 1285, 2255, 2627
AlwNI CAGNNNCTG 1 cut(s) 2740
AoxI GGCC 8 cut(s) 19, 274, 291, 408, 551, 1094, 1904, 2151
ApeKI GCWGC 2 cut(s) 1673, 2536
ApoI RAATTY 6 cut(s) 227, 1756, 1771, 1865, 2483, 2597
ArsI GACNNNNNNTTYG 1 cut(s) 31
AspLEI GCGC 3 cut(s) 252, 267, 429
AspS9I GGNCC 8 cut(s) 20, 155, 178, 216, 274, 552, 1941, 2287
AsuC2I CCSGG 2 cut(s) 220, 1649
AsuHPI GGTGA 5 cut(s) 769, 1136, 1280, 2305, 2356
AvaII GGWCC 5 cut(s) 155, 178, 216, 1941, 2287
BauI CACGAG 1 cut(s) 1836
BbsI GAAGAC 5 cut(s) 317, 1065, 1074, 1386, 2304
Bbv12I GWGCWC 2 cut(s) 940, 1837
BbvCI CCTCAGC 2 cut(s) 1091, 1735
BbvI GCAGC 2 cut(s) 1685, 2548
BccI CCATC 8 cut(s) 160, 302, 470, 748, 1090, 1647, 1786, 2758
BceAI ACGGC 3 cut(s) 14, 252, 2163
BcgI CGANNNNNNTGC 4 cut(s) 60, 94, 2040, 2074
BciVI GTATCC 1 cut(s) 1839
BclI TGATCA 1 cut(s) 2194
BcnI CCSGG 2 cut(s) 220, 1649
BcoDI GTCTC 7 cut(s) 116, 200, 525, 1012, 1802, 1868, 2619
BfaI CTAG 4 cut(s) 1200, 1476, 1857, 2334
BfmI CTRYAG 1 cut(s) 1048
BfoI RGCGCY 1 cut(s) 268
BfuAI ACCTGC 1 cut(s) 2298
BfuI GTATCC 1 cut(s) 1839
BglI GCCNNNNNGGC 1 cut(s) 273
BglII AGATCT 2 cut(s) 1100, 1438
BisI GCNGC 5 cut(s) 551, 1674, 2151, 2537, 2540
BlsI GCNGC 5 cut(s) 552, 1675, 2152, 2538, 2541
Bme1390I CCNGG 2 cut(s) 220, 1649
Bme18I GGWCC 5 cut(s) 155, 178, 216, 1941, 2287
BmeRI GACNNNNNGTC 1 cut(s) 2022
BmgBI CACGTC 1 cut(s) 935
BmgT120I GGNCC 8 cut(s) 20, 155, 178, 216, 274, 552, 1941, 2287
BmiI GGNNCC 4 cut(s) 157, 218, 1431, 1943
BmrFI CCNGG 2 cut(s) 220, 1649
BmrI ACTGGG 1 cut(s) 1336
BmsI GCATC 6 cut(s) 1020, 1042, 1186, 1453, 1582, 2544
BmuI ACTGGG 1 cut(s) 1336
BoxI GACNNNNGTC 1 cut(s) 1968
BpiI GAAGAC 5 cut(s) 317, 1065, 1074, 1386, 2304
BpmI CTGGAG 2 cut(s) 1131, 1448
Bpu10I CCTNAGC 2 cut(s) 1091, 1735
BpuEI CTTGAG 3 cut(s) 1160, 1951, 2163
BpuMI CCSGG 2 cut(s) 220, 1649
BsaAI YACGTR 2 cut(s) 2366, 2714
BsaBI GATNNNNATC 2 cut(s) 1105, 1347
BsaHI GRCGYC 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 5 cut(s) 117, 159, 238, 615, 1151
BsaXI ACNNNNNCTCC 8 cut(s) 476, 506, 946, 976, 1799, 1829, 2729, 2759
Bsc4I CCNNNNNNNGG 2 cut(s) 951, 2647
Bse1I ACTGG 3 cut(s) 46, 1331, 2570
Bse3DI GCAATG 2 cut(s) 930, 1623
Bse8I GATNNNNATC 2 cut(s) 1105, 1347
BseDI CCNNGG 5 cut(s) 117, 159, 238, 615, 1151
BseGI GGATG 7 cut(s) 535, 742, 1033, 1035, 1372, 1408, 1597
BseJI GATNNNNATC 2 cut(s) 1105, 1347
BseLI CCNNNNNNNGG 2 cut(s) 951, 2647
BseMI GCAATG 2 cut(s) 930, 1623
BseNI ACTGG 3 cut(s) 46, 1331, 2570
BseRI GAGGAG 2 cut(s) 497, 2618
BseXI GCAGC 2 cut(s) 1685, 2548
Bsh1236I CGCG 3 cut(s) 429, 2020, 2706
Bsh1285I CGRYCG 1 cut(s) 825
BshFI GGCC 8 cut(s) 21, 276, 293, 410, 553, 1096, 1906, 2153
BsiEI CGRYCG 1 cut(s) 825
BsiHKAI GWGCWC 2 cut(s) 940, 1837
BsiSI CCGG 4 cut(s) 18, 220, 1648, 1988
BslFI GGGAC 4 cut(s) 34, 202, 1927, 2010
BslI CCNNNNNNNGG 2 cut(s) 951, 2647
BsmAI GTCTC 7 cut(s) 116, 200, 525, 1012, 1802, 1868, 2619
BsmBI CGTCTC 1 cut(s) 116
BsmFI GGGAC 4 cut(s) 34, 202, 1927, 2010
BsnI GGCC 8 cut(s) 21, 276, 293, 410, 553, 1096, 1906, 2153
Bso31I GGTCTC 1 cut(s) 200
Bsp1286I GDGCHC 2 cut(s) 940, 1837
Bsp143I GATC 9 cut(s) 631, 690, 1100, 1117, 1277, 1438, 2194, 2260, 2632
Bsp68I TCGCGA 1 cut(s) 2706
BspACI CCGC 6 cut(s) 339, 550, 1751, 2150, 2539, 2557
BspANI GGCC 8 cut(s) 21, 276, 293, 410, 553, 1096, 1906, 2153
BspFNI CGCG 3 cut(s) 429, 2020, 2706
BspHI TCATGA 1 cut(s) 1980
BspLI GGNNCC 4 cut(s) 157, 218, 1431, 1943
BspMI ACCTGC 1 cut(s) 2298
BspPI GGATC 4 cut(s) 639, 1285, 2255, 2627
BspQI GCTCTTC 1 cut(s) 255
BspTNI GGTCTC 1 cut(s) 200
BsrBI CCGCTC 1 cut(s) 339
BsrDI GCAATG 2 cut(s) 930, 1623
BsrI ACTGG 3 cut(s) 46, 1331, 2570
BssECI CCNNGG 5 cut(s) 117, 159, 238, 615, 1151
BssMI GATC 9 cut(s) 631, 690, 1100, 1117, 1277, 1438, 2194, 2260, 2632
BssNI GRCGYC 1 cut(s) 234
BssSI CACGAG 1 cut(s) 1836
BssT1I CCWWGG 3 cut(s) 117, 159, 1151
Bst2BI CACGAG 1 cut(s) 1836
Bst4CI ACNGT 5 cut(s) 146, 578, 1879, 2350, 2642
Bst6I CTCTTC 7 cut(s) 255, 552, 963, 978, 1008, 1578, 2858
BstACI GRCGYC 1 cut(s) 234
BstAPI GCANNNNNTGC 1 cut(s) 1658
BstBAI YACGTR 2 cut(s) 2366, 2714
BstC8I GCNNGC 6 cut(s) 283, 431, 1654, 1671, 1908, 2534
BstENI CCTNNNNNAGG 1 cut(s) 949
BstF5I GGATG 7 cut(s) 535, 742, 1033, 1035, 1372, 1408, 1597
BstFNI CGCG 3 cut(s) 429, 2020, 2706
BstH2I RGCGCY 1 cut(s) 268
BstHHI GCGC 3 cut(s) 252, 267, 429
BstKTI GATC 9 cut(s) 634, 693, 1103, 1120, 1280, 1441, 2197, 2263, 2635
BstMAI GTCTC 7 cut(s) 116, 200, 525, 1012, 1802, 1868, 2619
BstMBI GATC 9 cut(s) 631, 690, 1100, 1117, 1277, 1438, 2194, 2260, 2632
BstMCI CGRYCG 1 cut(s) 825
BstNSI RCATGY 2 cut(s) 2536, 2828
BstPAI GACNNNNGTC 1 cut(s) 1968
BstSCI CCNGG 2 cut(s) 218, 1647
BstSFI CTRYAG 1 cut(s) 1048
BstSNI TACGTA 1 cut(s) 2714
BstUI CGCG 3 cut(s) 429, 2020, 2706
BstV1I GCAGC 2 cut(s) 1685, 2548
BstV2I GAAGAC 5 cut(s) 317, 1065, 1074, 1386, 2304
BstX2I RGATCY 4 cut(s) 631, 1100, 1277, 1438
BstXI CCANNNNNNTGG 1 cut(s) 166
BstYI RGATCY 4 cut(s) 631, 1100, 1277, 1438
BsuI GTATCC 1 cut(s) 1839
BsuRI GGCC 8 cut(s) 21, 276, 293, 410, 553, 1096, 1906, 2153
BtgZI GCGATG 1 cut(s) 179
BtrI CACGTC 1 cut(s) 935
BtsCI GGATG 7 cut(s) 535, 742, 1033, 1035, 1372, 1408, 1597
BtsI GCAGTG 3 cut(s) 314, 1663, 2527
BtsIMutI CAGTG 5 cut(s) 314, 1038, 1663, 2527, 2577
BtuMI TCGCGA 1 cut(s) 2706
BveI ACCTGC 1 cut(s) 2298
Cac8I GCNNGC 6 cut(s) 283, 431, 1654, 1671, 1908, 2534
CaiI CAGNNNCTG 1 cut(s) 2740
CciI TCATGA 1 cut(s) 1980
CfoI GCGC 3 cut(s) 252, 267, 429
Cfr13I GGNCC 8 cut(s) 20, 155, 178, 216, 274, 552, 1941, 2287
CseI GACGC 3 cut(s) 422, 1079, 2026
Csp6I GTAC 2 cut(s) 328, 420
CviQI GTAC 2 cut(s) 328, 420
DpnI GATC 9 cut(s) 633, 692, 1102, 1119, 1279, 1440, 2196, 2262, 2634
DpnII GATC 9 cut(s) 631, 690, 1100, 1117, 1277, 1438, 2194, 2260, 2632
DraI TTTAAA 2 cut(s) 1500, 2488
DrdI GACNNNNNNGTC 1 cut(s) 214
DriI GACNNNNNGTC 1 cut(s) 2022
DseDI GACNNNNNNGTC 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 2151
Eam1104I CTCTTC 7 cut(s) 255, 552, 963, 978, 1008, 1578, 2858
Eam1105I GACNNNNNGTC 1 cut(s) 2022
EarI CTCTTC 7 cut(s) 255, 552, 963, 978, 1008, 1578, 2858
Eco105I TACGTA 1 cut(s) 2714
Eco130I CCWWGG 3 cut(s) 117, 159, 1151
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 5 cut(s) 155, 178, 216, 1941, 2287
Eco57I CTGAAG 6 cut(s) 341, 987, 1278, 2136, 2534, 2762
EcoNI CCTNNNNNAGG 1 cut(s) 949
EcoO109I RGGNCCY 1 cut(s) 155
EcoT14I CCWWGG 3 cut(s) 117, 159, 1151
EcoT22I ATGCAT 1 cut(s) 1035
ErhI CCWWGG 3 cut(s) 117, 159, 1151
Esp3I CGTCTC 1 cut(s) 116
FalI AAGNNNNNCTT 4 cut(s) 452, 484, 2787, 2819
FaqI GGGAC 4 cut(s) 34, 202, 1927, 2010
FauI CCCGC 1 cut(s) 332
FauNDI CATATG 1 cut(s) 212
FbaI TGATCA 1 cut(s) 2194
Fnu4HI GCNGC 5 cut(s) 551, 1674, 2151, 2537, 2540
FokI GGATG 7 cut(s) 542, 749, 1020, 1042, 1379, 1415, 1604
Fsp4HI GCNGC 5 cut(s) 551, 1674, 2151, 2537, 2540
FspBI CTAG 4 cut(s) 1200, 1476, 1857, 2334
GlaI GCGC 3 cut(s) 251, 266, 428
GluI GCNGC 5 cut(s) 551, 1674, 2151, 2537, 2540
GsuI CTGGAG 2 cut(s) 1131, 1448
HaeII RGCGCY 1 cut(s) 268
HaeIII GGCC 8 cut(s) 21, 276, 293, 410, 553, 1096, 1906, 2153
HapII CCGG 4 cut(s) 18, 220, 1648, 1988
HgaI GACGC 3 cut(s) 422, 1079, 2026
HhaI GCGC 3 cut(s) 252, 267, 429
Hin1I GRCGYC 1 cut(s) 234
Hin6I GCGC 3 cut(s) 250, 265, 427
HinP1I GCGC 3 cut(s) 250, 265, 427
HincII GTYRAC 2 cut(s) 2145, 2175
HindII GTYRAC 2 cut(s) 2145, 2175
HindIII AAGCTT 1 cut(s) 1667
HpaI GTTAAC 1 cut(s) 2145
HpaII CCGG 4 cut(s) 18, 220, 1648, 1988
HphI GGTGA 5 cut(s) 769, 1136, 1280, 2305, 2356
Hpy166II GTNNAC 5 cut(s) 777, 1712, 2145, 2175, 2645
Hpy8I GTNNAC 5 cut(s) 777, 1712, 2145, 2175, 2645
Hpy99I CGWCG 2 cut(s) 104, 236
HpyCH4III ACNGT 5 cut(s) 146, 578, 1879, 2350, 2642
HpyCH4IV ACGT 6 cut(s) 234, 846, 934, 2126, 2365, 2713
HpySE526I ACGT 6 cut(s) 234, 846, 934, 2126, 2365, 2713
Hsp92I GRCGYC 1 cut(s) 234
HspAI GCGC 3 cut(s) 250, 265, 427
Ksp22I TGATCA 1 cut(s) 2194
KspAI GTTAAC 1 cut(s) 2145
Kzo9I GATC 9 cut(s) 631, 690, 1100, 1117, 1277, 1438, 2194, 2260, 2632
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 5 cut(s) 101, 991, 1429, 1573, 2737
Lsp1109I GCAGC 2 cut(s) 1685, 2548
LweI GCATC 6 cut(s) 1020, 1042, 1186, 1453, 1582, 2544
MaeI CTAG 4 cut(s) 1200, 1476, 1857, 2334
MaeII ACGT 6 cut(s) 234, 846, 934, 2126, 2365, 2713
MaeIII GTNAC 4 cut(s) 638, 665, 2122, 2344
MalI GATC 9 cut(s) 633, 692, 1102, 1119, 1279, 1440, 2196, 2262, 2634
MbiI CCGCTC 1 cut(s) 339
MboI GATC 9 cut(s) 631, 690, 1100, 1117, 1277, 1438, 2194, 2260, 2632
MfeI CAATTG 1 cut(s) 437
MflI RGATCY 4 cut(s) 631, 1100, 1277, 1438
MhlI GDGCHC 2 cut(s) 940, 1837
MluI ACGCGT 1 cut(s) 2018
MlyI GAGTC 7 cut(s) 514, 887, 955, 1376, 1804, 1978, 2294
MmeI TCCRAC 4 cut(s) 123, 1569, 2343, 2427
Mph1103I ATGCAT 1 cut(s) 1035
MslI CAYNNNNRTG 2 cut(s) 663, 2282
MspA1I CMGCKG 2 cut(s) 1753, 2539
MspI CCGG 4 cut(s) 18, 220, 1648, 1988
MspR9I CCNGG 2 cut(s) 220, 1649
MunI CAATTG 1 cut(s) 437
MvnI CGCG 3 cut(s) 429, 2020, 2706
NciI CCSGG 2 cut(s) 220, 1649
NdeI CATATG 1 cut(s) 212
NdeII GATC 9 cut(s) 631, 690, 1100, 1117, 1277, 1438, 2194, 2260, 2632
NlaIV GGNNCC 4 cut(s) 157, 218, 1431, 1943
NmuCI GTSAC 4 cut(s) 638, 665, 2122, 2344
NruI TCGCGA 1 cut(s) 2706
NsiI ATGCAT 1 cut(s) 1035
NspI RCATGY 2 cut(s) 2536, 2828
PaeI GCATGC 1 cut(s) 2536
PagI TCATGA 1 cut(s) 1980
PciSI GCTCTTC 1 cut(s) 255
PcsI WCGNNNNNNNCGW 1 cut(s) 2710
PfeI GAWTC 9 cut(s) 369, 1127, 1180, 1205, 1226, 1244, 1644, 2183, 2391
PfoI TCCNGGA 1 cut(s) 218
PkrI GCNGC 5 cut(s) 552, 1675, 2152, 2538, 2541
PleI GAGTC 7 cut(s) 513, 887, 955, 1376, 1804, 1978, 2294
PpsI GAGTC 7 cut(s) 513, 887, 955, 1376, 1804, 1978, 2294
Ppu21I YACGTR 2 cut(s) 2366, 2714
PpuMI RGGWCCY 1 cut(s) 155
PshAI GACNNNNGTC 1 cut(s) 1968
Psp5II RGGWCCY 1 cut(s) 155
PspN4I GGNNCC 4 cut(s) 157, 218, 1431, 1943
PspPI GGNCC 8 cut(s) 20, 155, 178, 216, 274, 552, 1941, 2287
PspPPI RGGWCCY 1 cut(s) 155
PstNI CAGNNNCTG 1 cut(s) 2740
PsuI RGATCY 4 cut(s) 631, 1100, 1277, 1438
RruI TCGCGA 1 cut(s) 2706
RsaI GTAC 2 cut(s) 329, 421
RsaNI GTAC 2 cut(s) 328, 420
RseI CAYNNNNRTG 2 cut(s) 663, 2282
SapI GCTCTTC 1 cut(s) 255
SatI GCNGC 5 cut(s) 551, 1674, 2151, 2537, 2540
Sau3AI GATC 9 cut(s) 631, 690, 1100, 1117, 1277, 1438, 2194, 2260, 2632
Sau96I GGNCC 8 cut(s) 20, 155, 178, 216, 274, 552, 1941, 2287
SchI GAGTC 7 cut(s) 514, 887, 955, 1376, 1804, 1978, 2294
ScrFI CCNGG 2 cut(s) 220, 1649
SduI GDGCHC 2 cut(s) 940, 1837
SfaNI GCATC 6 cut(s) 1020, 1042, 1186, 1453, 1582, 2544
SfcI CTRYAG 1 cut(s) 1048
SinI GGWCC 5 cut(s) 155, 178, 216, 1941, 2287
SmiMI CAYNNNNRTG 2 cut(s) 663, 2282
SmlI CTYRAG 3 cut(s) 1139, 1930, 2178
SmoI CTYRAG 3 cut(s) 1139, 1930, 2178
SnaBI TACGTA 1 cut(s) 2714
SphI GCATGC 1 cut(s) 2536
SsiI CCGC 6 cut(s) 339, 550, 1751, 2150, 2539, 2557
SspI AATATT 3 cut(s) 1724, 1995, 2412
SspMI CTAG 4 cut(s) 1200, 1476, 1857, 2334
StyD4I CCNGG 2 cut(s) 218, 1647
StyI CCWWGG 3 cut(s) 117, 159, 1151
TaaI ACNGT 5 cut(s) 146, 578, 1879, 2350, 2642
TaiI ACGT 6 cut(s) 237, 849, 937, 2129, 2368, 2716
TaqI TCGA 8 cut(s) 204, 231, 297, 794, 821, 1185, 1642, 2747
TaqII GACCGA 1 cut(s) 839
TauI GCSGC 3 cut(s) 553, 2153, 2542
TfiI GAWTC 9 cut(s) 369, 1127, 1180, 1205, 1226, 1244, 1644, 2183, 2391
TscAI CASTG 5 cut(s) 321, 1045, 1663, 2534, 2577
TseFI GTSAC 4 cut(s) 638, 665, 2122, 2344
TseI GCWGC 2 cut(s) 1673, 2536
Tsp45I GTSAC 4 cut(s) 638, 665, 2122, 2344
TspGWI ACGGA 2 cut(s) 657, 1803
TspRI CASTG 5 cut(s) 321, 1045, 1663, 2534, 2577
VpaK11BI GGWCC 5 cut(s) 155, 178, 216, 1941, 2287
XagI CCTNNNNNAGG 1 cut(s) 949
XapI RAATTY 6 cut(s) 227, 1756, 1771, 1865, 2483, 2597
XceI RCATGY 2 cut(s) 2536, 2828
XspI CTAG 4 cut(s) 1200, 1476, 1857, 2334
ZraI GACGTC 1 cut(s) 235
Zsp2I ATGCAT 1 cut(s) 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.