Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009417

Physical Location & Seq

Genomic Coordinates Forward (+)

26171856 .. 26174022

Gene Structure 2167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G69580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTGTTTATTAATGGAGATCAACAATAATGCCAACAATACTAATACTACTATTGATAATCACAAGGCAAAGATGAGCCTTGTGTTGTCAACGGATGCTAAGCCAAGGTTGAAATGGACTTGTGATCTTCATCACAAATTCATCGAAGCCGTTAATCAACTTGGAGGACCTAACAAAGCAACACCTAAGGGTTTGATGAAGGTTATGGAGATTCCTGGGCTTACCTTATACCATCTCAAGAGCCATTTACAGAAATATCGGTTAGGGAAGAGCATGAAGTTCGATGATAACAAGCTAGAAGTTTCCTCTGCATCAGAGAATCAAGAAGTTGAGAGTAAAAACGATTCAAGAGATCTCCGAGGCTGCAGTGTCACCGAAGAAAACAGCAATCCAGCTAAAGAAGGGCTACAAATCACAGAGGCTTTACAAATGCAGATGGAAGTTCAGAAGAAACTTCATGAACAAATCGAAGTTCAGAGGCATTTGCAGGTGAAGATTGAGGCACAAGGAAAGTATCTACAGTCCGTTTTAATGAAAGCTCAACAAACTCTCGCTGGCTACTCATCTTCAAATCTCGGCATGGATTTTGCGAGGACCGAGCTCTCTAGATTAGCTTCAATGGTGAACAGAGGCTGTCCAAGCACTTCGTTCTCAGAGCTAACGCAAGTAGAAGAAGAAGAAGAAGGTTTCTTGTGGTACAAGAAACCAGAAAACAGAGGAATTAGTCAGCTGAGATGTTCAGTAGAGAGCTCGTTGACATCTTCAGAGACCTCAGAGACAAAACTGGATACTGACAATAACCTTAATAAATCGATTGAACTTCCGTTGATGGAGATCAACTCGGAAGTGATGAAGGGGAAGAAGAGAAGCATAAACGACGTCGTTTGCGTGGAGCAGCCTCTAATGAAGAGAGCTTTTGGAGTTGATGATGATGAGCATTTGAAGTTGAGTTTGAATACTTACAAGAAAGACATGGAGGCGTGTACGAACATAGGACTAGGGTTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

336

Amino Acids

37.9

Weight (kDa)

6.12

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	36 - 87	5e-06	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	136 - 183	4.2e-23	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69580 AT1G69580
fragaria_vesca	FvH4_4g31230 FvH4_4g31230 FvH4_4g31230 FvH4_4g31230
malus_domestica	MD13G1070900.v1.1 MD16G1071600.v1.1
prunus_persica	Prupe.1G275900_v2.0.a1
pyrus_communis	pycom13g06350 pycom16g06190
rosa_chinensis	RchiOBHm_Chr4g0439621
rosa_laevigata	RLG00000006253
rosa_multiflora	Rmu_sc0002549.1_g000009
rosa_roxburghii	Rroxscaffold_5G00380550
rosa_rugosa	Rorug04G0320200 Rorug04G0320300
rosa_samantha	Rh4AG371300 Rh4BG383100 Rh4CG397700 Rh4DG377900
rosa_wichuraiana	Rw4G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	478
AatII	GACGTC	1 cut(s)	882
Acc36I	ACCTGC	1 cut(s)	478
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	747
AcyI	GRCGYC	1 cut(s)	879
AfaI	GTAC	2 cut(s)	698, 985
AgsI	TTSAA	7 cut(s)	112, 348, 570, 618, 818, 943, 955
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	9 cut(s)	295, 395, 539, 601, 614, 658, 730, 750, 914
AluI	AGCT	9 cut(s)	295, 395, 539, 601, 614, 658, 730, 750, 914
Alw21I	GWGCWC	2 cut(s)	603, 752
Alw26I	GTCTC	2 cut(s)	761, 770
AlwNI	CAGNNNCTG	1 cut(s)	633
ApeKI	GCWGC	2 cut(s)	363, 895
ApoI	RAATTY	1 cut(s)	137
AseI	ATTAAT	1 cut(s)	11
AspS9I	GGNCC	2 cut(s)	167, 594
AsuHPI	GGTGA	3 cut(s)	364, 502, 634
AvaII	GGWCC	2 cut(s)	167, 594
AxyI	CCTNAGG	1 cut(s)	186
BanII	GRGCYC	2 cut(s)	603, 752
Bbv12I	GWGCWC	2 cut(s)	603, 752
BbvI	GCAGC	2 cut(s)	350, 907
BccI	CCATC	3 cut(s)	240, 430, 823
BceAI	ACGGC	1 cut(s)	134
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BciT130I	CCWGG	1 cut(s)	216
BciVI	GTATCC	1 cut(s)	781
BcoDI	GTCTC	2 cut(s)	761, 770
BfaI	CTAG	3 cut(s)	296, 606, 998
BfmI	CTRYAG	2 cut(s)	364, 518
BfuAI	ACCTGC	1 cut(s)	478
BfuI	GTATCC	1 cut(s)	781
BglII	AGATCT	1 cut(s)	352
BisI	GCNGC	2 cut(s)	364, 896
BlpI	GCTNAGC	1 cut(s)	99
BlsI	GCNGC	2 cut(s)	365, 897
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	2 cut(s)	167, 594
BmgT120I	GGNCC	2 cut(s)	167, 594
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	2 cut(s)	85, 320
BplI	GAGNNNNNCTC	2 cut(s)	824, 856
Bpu1102I	GCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	221
Bsa29I	ATCGAT	1 cut(s)	812
BsaBI	GATNNNNATC	2 cut(s)	129, 833
BsaHI	GRCGYC	1 cut(s)	879
BsaI	GGTCTC	1 cut(s)	761
BsaJI	CCNNGG	3 cut(s)	104, 215, 358
Bse1I	ACTGG	1 cut(s)	789
Bse21I	CCTNAGG	1 cut(s)	186
Bse8I	GATNNNNATC	2 cut(s)	129, 833
BseBI	CCWGG	1 cut(s)	216
BseCI	ATCGAT	1 cut(s)	812
BseDI	CCNNGG	3 cut(s)	104, 215, 358
BseGI	GGATG	1 cut(s)	100
BseJI	GATNNNNATC	2 cut(s)	129, 833
BseMII	CTCAG	3 cut(s)	666, 722, 786
BseNI	ACTGG	1 cut(s)	789
BseXI	GCAGC	2 cut(s)	350, 907
BshVI	ATCGAT	1 cut(s)	812
BsiHKAI	GWGCWC	2 cut(s)	603, 752
BsmAI	GTCTC	2 cut(s)	761, 770
Bso31I	GGTCTC	1 cut(s)	761
Bsp1286I	GDGCHC	2 cut(s)	603, 752
Bsp143I	GATC	4 cut(s)	18, 124, 352, 834
Bsp1720I	GCTNAGC	1 cut(s)	99
BspCNI	CTCAG	3 cut(s)	665, 723, 785
BspDI	ATCGAT	1 cut(s)	812
BspHI	TCATGA	1 cut(s)	457
BspMAI	CTGCAG	1 cut(s)	368
BspMI	ACCTGC	1 cut(s)	478
BspQI	GCTCTTC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	761
BsrI	ACTGG	1 cut(s)	789
BssECI	CCNNGG	3 cut(s)	104, 215, 358
BssMI	GATC	4 cut(s)	18, 124, 352, 834
BssNI	GRCGYC	1 cut(s)	879
BssT1I	CCWWGG	1 cut(s)	104
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	522
Bst6I	CTCTTC	3 cut(s)	263, 857, 902
BstACI	GRCGYC	1 cut(s)	879
BstC8I	GCNNGC	1 cut(s)	556
BstDEI	CTNAG	5 cut(s)	99, 186, 652, 731, 772
BstF5I	GGATG	1 cut(s)	100
BstKTI	GATC	4 cut(s)	21, 127, 355, 837
BstMAI	GTCTC	2 cut(s)	761, 770
BstMBI	GATC	4 cut(s)	18, 124, 352, 834
BstMWI	GCNNNNNNNGC	1 cut(s)	639
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	214
BstSFI	CTRYAG	2 cut(s)	364, 518
BstV1I	GCAGC	2 cut(s)	350, 907
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
Bsu15I	ATCGAT	1 cut(s)	812
Bsu36I	CCTNAGG	1 cut(s)	186
BsuI	GTATCC	1 cut(s)	781
BsuTUI	ATCGAT	1 cut(s)	812
BtsCI	GGATG	1 cut(s)	100
BtsI	GCAGTG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	373
BveI	ACCTGC	1 cut(s)	478
Cac8I	GCNNGC	1 cut(s)	556
CaiI	CAGNNNCTG	1 cut(s)	633
CciI	TCATGA	1 cut(s)	457
Cfr13I	GGNCC	2 cut(s)	167, 594
ClaI	ATCGAT	1 cut(s)	812
Csp6I	GTAC	2 cut(s)	697, 984
CviAII	CATG	4 cut(s)	274, 458, 580, 973
CviQI	GTAC	2 cut(s)	697, 984
DdeI	CTNAG	5 cut(s)	99, 186, 652, 731, 772
DpnI	GATC	4 cut(s)	20, 126, 354, 836
DpnII	GATC	4 cut(s)	18, 124, 352, 834
Eam1104I	CTCTTC	3 cut(s)	263, 857, 902
EarI	CTCTTC	3 cut(s)	263, 857, 902
Ecl136II	GAGCTC	2 cut(s)	601, 750
Eco130I	CCWWGG	1 cut(s)	104
Eco24I	GRGCYC	2 cut(s)	603, 752
Eco31I	GGTCTC	1 cut(s)	761
Eco47I	GGWCC	2 cut(s)	167, 594
Eco53kI	GAGCTC	2 cut(s)	601, 750
Eco57I	CTGAAG	1 cut(s)	747
Eco81I	CCTNAGG	1 cut(s)	186
EcoICRI	GAGCTC	2 cut(s)	601, 750
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	104
EcoT38I	GRGCYC	2 cut(s)	603, 752
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	4 cut(s)	277, 461, 583, 976
FaiI	YATR	8 cut(s)	206, 229, 275, 459, 581, 872, 974, 992
FatI	CATG	4 cut(s)	273, 457, 579, 972
Fnu4HI	GCNGC	2 cut(s)	364, 896
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	2 cut(s)	603, 752
Fsp4HI	GCNGC	2 cut(s)	364, 896
FspBI	CTAG	3 cut(s)	296, 606, 998
GluI	GCNGC	2 cut(s)	364, 896
Hin1I	GRCGYC	1 cut(s)	879
Hin1II	CATG	4 cut(s)	277, 461, 583, 976
HincII	GTYRAC	2 cut(s)	90, 756
HindII	GTYRAC	2 cut(s)	90, 756
HinfI	GANTC	3 cut(s)	211, 319, 344
HphI	GGTGA	3 cut(s)	364, 502, 634
Hpy166II	GTNNAC	4 cut(s)	90, 625, 756, 984
Hpy188I	TCNGA	8 cut(s)	316, 359, 447, 477, 655, 766, 775, 844
Hpy188III	TCNNGA	5 cut(s)	238, 323, 348, 458, 606
Hpy8I	GTNNAC	4 cut(s)	90, 625, 756, 984
Hpy99I	CGWCG	2 cut(s)	881, 884
HpyAV	CCTTC	4 cut(s)	193, 395, 677, 847
HpyCH4III	ACNGT	1 cut(s)	522
HpyCH4IV	ACGT	1 cut(s)	879
HpyCH4V	TGCA	4 cut(s)	311, 366, 433, 487
HpyF10VI	GCNNNNNNNGC	1 cut(s)	639
HpyF3I	CTNAG	5 cut(s)	99, 186, 652, 731, 772
HpySE526I	ACGT	1 cut(s)	879
Hsp92I	GRCGYC	1 cut(s)	879
Hsp92II	CATG	4 cut(s)	277, 461, 583, 976
Kzo9I	GATC	4 cut(s)	18, 124, 352, 834
LguI	GCTCTTC	1 cut(s)	263
LmnI	GCTCC	1 cut(s)	892
LpnPI	CCDG	7 cut(s)	201, 228, 405, 473, 540, 720, 770
Lsp1109I	GCAGC	2 cut(s)	350, 907
LweI	GCATC	2 cut(s)	85, 320
MaeI	CTAG	3 cut(s)	296, 606, 998
MaeII	ACGT	1 cut(s)	879
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	4 cut(s)	20, 126, 354, 836
MboI	GATC	4 cut(s)	18, 124, 352, 834
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	2 cut(s)	603, 752
MluCI	AATT	3 cut(s)	137, 720, 1006
MseI	TTAA	6 cut(s)	11, 153, 530, 804, 1005, 1009
MspA1I	CMGCKG	1 cut(s)	730
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	639
NdeII	GATC	4 cut(s)	18, 124, 352, 834
NlaIII	CATG	4 cut(s)	277, 461, 583, 976
NmeAIII	GCCGAG	1 cut(s)	555
NmuCI	GTSAC	1 cut(s)	370
PacI	TTAATTAA	1 cut(s)	1009
PagI	TCATGA	1 cut(s)	457
PaqCI	CACCTGC	1 cut(s)	478
PciSI	GCTCTTC	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	1 cut(s)	885
PfeI	GAWTC	3 cut(s)	211, 319, 344
PkrI	GCNGC	2 cut(s)	365, 897
PpuMI	RGGWCCY	1 cut(s)	167
PshBI	ATTAAT	1 cut(s)	11
Psp124BI	GAGCTC	2 cut(s)	603, 752
Psp5II	RGGWCCY	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspPI	GGNCC	2 cut(s)	167, 594
PspPPI	RGGWCCY	1 cut(s)	167
PstI	CTGCAG	1 cut(s)	368
PstNI	CAGNNNCTG	1 cut(s)	633
PsuI	RGATCY	1 cut(s)	352
PvuII	CAGCTG	1 cut(s)	730
RsaI	GTAC	2 cut(s)	698, 985
RsaNI	GTAC	2 cut(s)	697, 984
SacI	GAGCTC	2 cut(s)	603, 752
SapI	GCTCTTC	1 cut(s)	263
SaqAI	TTAA	6 cut(s)	11, 153, 530, 804, 1005, 1009
SatI	GCNGC	2 cut(s)	364, 896
Sau3AI	GATC	4 cut(s)	18, 124, 352, 834
Sau96I	GGNCC	2 cut(s)	167, 594
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	2 cut(s)	603, 752
SfaNI	GCATC	2 cut(s)	85, 320
SfcI	CTRYAG	2 cut(s)	364, 518
SinI	GGWCC	2 cut(s)	167, 594
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	3 cut(s)	137, 720, 1006
SspMI	CTAG	3 cut(s)	296, 606, 998
SstI	GAGCTC	2 cut(s)	603, 752
StyD4I	CCNGG	1 cut(s)	214
StyI	CCWWGG	1 cut(s)	104
TaaI	ACNGT	1 cut(s)	522
TaiI	ACGT	1 cut(s)	882
TaqI	TCGA	4 cut(s)	144, 282, 468, 812
TaqII	GACCGA	1 cut(s)	611
TasI	AATT	3 cut(s)	137, 720, 1006
TfiI	GAWTC	3 cut(s)	211, 319, 344
Tru1I	TTAA	6 cut(s)	11, 153, 530, 804, 1005, 1009
Tru9I	TTAA	6 cut(s)	11, 153, 530, 804, 1005, 1009
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	2 cut(s)	363, 895
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	9 cut(s)	119, 130, 212, 290, 446, 474, 548, 866, 920
TspGWI	ACGGA	3 cut(s)	107, 514, 813
TspRI	CASTG	1 cut(s)	373
VpaK11BI	GGWCC	2 cut(s)	167, 594
VspI	ATTAAT	1 cut(s)	11
XapI	RAATTY	1 cut(s)	137
XbaI	TCTAGA	1 cut(s)	605
XcmI	CCANNNNNNNNNTGG	1 cut(s)	111
XspI	CTAG	3 cut(s)	296, 606, 998
ZraI	GACGTC	1 cut(s)	880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.