Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009417

Physical Location & Seq

Genomic Coordinates Forward (+)

30484701 .. 30486688

Gene Structure 1988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g31230.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGGTCTGCAGAATATGCAAAATCAGAATATGAATTTAGTGTTGTCCACTGATGCAAAGCCTAGGCTAAAATGGACTCCAGAACTTCATCAGAGATTTGTTGAAGCAGTCAATCAGCTTGGAGGTGCAGATAAGGCCACACCAAAGACTCTGATGAGGATGATGGGAATTCATGGACTGACTTTGTACCACCTAAAGAGCCATTTACAGAAATATAGGCTAGGGAAAAGCCAACAATCAGAAAACTGCAGTGACAGTGTGCAAGAAGATAACAAAGAGATTCAGAGCAGTGATGGCCATTTCTGCACAGATATCAATGATGAAACTCACAGCCAGATTAATGAAAGCGCGCAGATAGCTCAGTCTCTCAAACTGCAAATGGAAGTGCAGAGGAAATTACATGAACAAATTGAGGTGCAGAGACATCTTCAGCTACGAATCGAAGCTCAAGGGAAGTATTTACAATCAGTGCTAAAGAAAGCACAGGAAACTCTTTCTGGGTACAATTCTTCATCAGTGGGTGTAGAACTTGCCAAGGCTGAAATCTCTCAGTTAGTTTCAATGGTCAACACTGGCTGCCCCAGTTCTTCATTCTCAGAGTTAACAGAAACAAGAACTCCAACCCTAAAAGACATTGAAAGGAAGCACATCAGAGACACAATTTGTTCCATGGAAAGTTCCCTCACATCTTCTGAAAGCTCAGGGAGGAAGGAAGAGAAGTTTAAGACAACCTGTGTAGAACTACCATTAATGGAAATTCACCCAGAAGTGAAGCCATTGAATAATGTTACAAGCAATCAAAACCATGGGATTGGGAGGAAGAGAAGTATAAGCAGTTCCATTTCTGATGGGATCTGTGTTGAGCAACCAGTAGCTAAAAGATCATCAGCAACACAAAGAGATAAAAGTGGCAACCATCTGAGATTGGTCACAATTGATTTGAACAGCAAGTATCAGAATGACATTGATTCTGGTCCAAAAGTACTAGACTTGAACTGCAAGGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

337

Amino Acids

37.6

Weight (kDa)

8.1

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_CC_LHEQLE	PF14379	82 - 128	2.6e-21	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69580 AT1G69580
fragaria_vesca	FvH4_4g31230 FvH4_4g31230 FvH4_4g31230 FvH4_4g31230
malus_domestica	MD13G1070900.v1.1 MD16G1071600.v1.1
prunus_persica	Prupe.1G275900_v2.0.a1
pyrus_communis	pycom13g06350 pycom16g06190
rosa_chinensis	RchiOBHm_Chr4g0439621
rosa_laevigata	RLG00000006253
rosa_multiflora	Rmu_sc0002549.1_g000009
rosa_roxburghii	Rroxscaffold_5G00380550
rosa_rugosa	Rorug04G0320200 Rorug04G0320300
rosa_samantha	Rh4AG371300 Rh4BG383100 Rh4CG397700 Rh4DG377900
rosa_wichuraiana	Rw4G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	350
AclWI	GGATC	1 cut(s)	860
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	4 cut(s)	34, 168, 756, 1005
AcuI	CTGAAG	1 cut(s)	413
AfaI	GTAC	3 cut(s)	188, 503, 984
AgsI	TTSAA	6 cut(s)	104, 561, 638, 781, 943, 994
AluBI	AGCT	6 cut(s)	118, 359, 433, 446, 699, 875
AluI	AGCT	6 cut(s)	118, 359, 433, 446, 699, 875
Alw26I	GTCTC	3 cut(s)	369, 415, 648
AlwI	GGATC	1 cut(s)	860
AoxI	GGCC	2 cut(s)	135, 295
ApeKI	GCWGC	1 cut(s)	576
ApoI	RAATTY	4 cut(s)	34, 168, 756, 1005
AseI	ATTAAT	2 cut(s)	339, 749
AspA2I	CCTAGG	1 cut(s)	62
AspLEI	GCGC	2 cut(s)	350, 352
AspS9I	GGNCC	1 cut(s)	974
AsuHPI	GGTGA	1 cut(s)	752
AvaII	GGWCC	1 cut(s)	974
AvrII	CCTAGG	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	563
BccI	CCATC	4 cut(s)	157, 287, 842, 924
BcoDI	GTCTC	3 cut(s)	369, 415, 648
BfaI	CTAG	3 cut(s)	63, 221, 986
BfmI	CTRYAG	2 cut(s)	8, 247
BisI	GCNGC	1 cut(s)	577
BlnI	CCTAGG	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	578
BmcAI	AGTACT	1 cut(s)	984
Bme18I	GGWCC	1 cut(s)	974
BmgT120I	GGNCC	1 cut(s)	974
BmrI	ACTGGG	1 cut(s)	576
BmsI	GCATC	1 cut(s)	43
BmuI	ACTGGG	1 cut(s)	576
BpmI	CTGGAG	1 cut(s)	63
Bpu10I	CCTNAGC	1 cut(s)	700
BpuEI	CTTGAG	1 cut(s)	432
BsaJI	CCNNGG	4 cut(s)	62, 534, 669, 805
BsaXI	ACNNNNNCTCC	2 cut(s)	601, 631
Bse1I	ACTGG	3 cut(s)	577, 582, 869
BseDI	CCNNGG	4 cut(s)	62, 534, 669, 805
BseGI	GGATG	1 cut(s)	165
BseMII	CTCAG	5 cut(s)	374, 563, 609, 714, 911
BseNI	ACTGG	3 cut(s)	577, 582, 869
BsePI	GCGCGC	1 cut(s)	348
BseXI	GCAGC	1 cut(s)	563
BsgI	GTGCAG	4 cut(s)	147, 289, 407, 437
Bsh1236I	CGCG	1 cut(s)	350
BshFI	GGCC	2 cut(s)	137, 297
BsmAI	GTCTC	3 cut(s)	369, 415, 648
BsnI	GGCC	2 cut(s)	137, 297
Bsp143I	GATC	2 cut(s)	852, 881
Bsp19I	CCATGG	2 cut(s)	669, 805
BspANI	GGCC	2 cut(s)	137, 297
BspCNI	CTCAG	5 cut(s)	373, 562, 608, 713, 912
BspFNI	CGCG	1 cut(s)	350
BspMAI	CTGCAG	2 cut(s)	12, 251
BspPI	GGATC	1 cut(s)	860
BsrI	ACTGG	3 cut(s)	577, 582, 869
BssECI	CCNNGG	4 cut(s)	62, 534, 669, 805
BssHII	GCGCGC	1 cut(s)	348
BssMI	GATC	2 cut(s)	852, 881
BssT1I	CCWWGG	4 cut(s)	62, 534, 669, 805
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	2 cut(s)	708, 815
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	350
BstDEI	CTNAG	5 cut(s)	360, 549, 595, 700, 920
BstDSI	CCRYGG	2 cut(s)	669, 805
BstF5I	GGATG	1 cut(s)	165
BstFNI	CGCG	1 cut(s)	350
BstHHI	GCGC	2 cut(s)	350, 352
BstKTI	GATC	2 cut(s)	855, 884
BstMAI	GTCTC	3 cut(s)	369, 415, 648
BstMBI	GATC	2 cut(s)	852, 881
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 134, 294, 303, 356
BstSFI	CTRYAG	2 cut(s)	8, 247
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	1 cut(s)	563
BstX2I	RGATCY	1 cut(s)	852
BstXI	CCANNNNNNTGG	1 cut(s)	812
BstYI	RGATCY	1 cut(s)	852
BsuRI	GGCC	2 cut(s)	137, 297
BtgI	CCRYGG	2 cut(s)	669, 805
BtsCI	GGATG	1 cut(s)	165
BtsI	GCAGTG	2 cut(s)	256, 295
BtsIMutI	CAGTG	7 cut(s)	48, 256, 262, 295, 474, 522, 570
Cac8I	GCNNGC	1 cut(s)	350
CfoI	GCGC	2 cut(s)	350, 352
Cfr13I	GGNCC	1 cut(s)	974
Csp6I	GTAC	3 cut(s)	187, 502, 983
CviAII	CATG	4 cut(s)	173, 401, 670, 806
CviQI	GTAC	3 cut(s)	187, 502, 983
DdeI	CTNAG	5 cut(s)	360, 549, 595, 700, 920
DpnI	GATC	2 cut(s)	854, 883
DpnII	GATC	2 cut(s)	852, 881
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	2 cut(s)	708, 815
EarI	CTCTTC	2 cut(s)	708, 815
Eco130I	CCWWGG	4 cut(s)	62, 534, 669, 805
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	974
Eco57I	CTGAAG	1 cut(s)	413
EcoRI	GAATTC	1 cut(s)	168
EcoRV	GATATC	1 cut(s)	313
EcoT14I	CCWWGG	4 cut(s)	62, 534, 669, 805
ErhI	CCWWGG	4 cut(s)	62, 534, 669, 805
FaeI	CATG	4 cut(s)	176, 404, 673, 809
FaiI	YATR	8 cut(s)	17, 32, 174, 216, 402, 671, 807, 830
FatI	CATG	4 cut(s)	172, 400, 669, 805
Fnu4HI	GCNGC	1 cut(s)	577
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	1 cut(s)	577
FspBI	CTAG	3 cut(s)	63, 221, 986
GlaI	GCGC	2 cut(s)	349, 351
GluI	GCNGC	1 cut(s)	577
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	2 cut(s)	137, 297
HhaI	GCGC	2 cut(s)	350, 352
Hin1II	CATG	4 cut(s)	176, 404, 673, 809
Hin6I	GCGC	2 cut(s)	348, 350
HinP1I	GCGC	2 cut(s)	348, 350
HincII	GTYRAC	2 cut(s)	568, 603
HindII	GTYRAC	2 cut(s)	568, 603
HinfI	GANTC	5 cut(s)	76, 148, 280, 438, 968
HpaI	GTTAAC	1 cut(s)	603
HphI	GGTGA	1 cut(s)	752
Hpy166II	GTNNAC	3 cut(s)	48, 568, 603
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	3 cut(s)	48, 568, 603
HpyAV	CCTTC	1 cut(s)	703
HpyCH4III	ACNGT	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 134, 294, 303, 356
HpyF3I	CTNAG	5 cut(s)	360, 549, 595, 700, 920
Hsp92II	CATG	4 cut(s)	176, 404, 673, 809
HspAI	GCGC	2 cut(s)	348, 350
KspAI	GTTAAC	1 cut(s)	603
Kzo9I	GATC	2 cut(s)	852, 881
Lsp1109I	GCAGC	1 cut(s)	563
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	3 cut(s)	63, 221, 986
MaeIII	GTNAC	3 cut(s)	251, 787, 928
MalI	GATC	2 cut(s)	854, 883
MboI	GATC	2 cut(s)	852, 881
MboII	GAAGA	7 cut(s)	278, 419, 501, 579, 681, 725, 832
MfeI	CAATTG	1 cut(s)	933
MflI	RGATCY	1 cut(s)	852
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	9 cut(s)	34, 168, 395, 408, 505, 660, 756, 933, 1005
MluNI	TGGCCA	1 cut(s)	297
MlyI	GAGTC	2 cut(s)	70, 142
MmeI	TCCRAC	1 cut(s)	644
MnlI	CCTC	7 cut(s)	116, 150, 384, 406, 692, 699, 810
Mox20I	TGGCCA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	297
MseI	TTAA	4 cut(s)	339, 602, 723, 749
Msp20I	TGGCCA	1 cut(s)	297
MunI	CAATTG	1 cut(s)	933
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	5 cut(s)	16, 134, 294, 303, 356
NcoI	CCATGG	2 cut(s)	669, 805
NdeII	GATC	2 cut(s)	852, 881
NlaIII	CATG	4 cut(s)	176, 404, 673, 809
NmuCI	GTSAC	2 cut(s)	251, 928
PauI	GCGCGC	1 cut(s)	348
PfeI	GAWTC	3 cut(s)	280, 438, 968
PkrI	GCNGC	1 cut(s)	578
PleI	GAGTC	2 cut(s)	70, 142
PpsI	GAGTC	2 cut(s)	70, 142
PshBI	ATTAAT	2 cut(s)	339, 749
PspPI	GGNCC	1 cut(s)	974
PsrI	GAACNNNNNNTAC	2 cut(s)	820, 852
PstI	CTGCAG	2 cut(s)	12, 251
PsuI	RGATCY	1 cut(s)	852
PteI	GCGCGC	1 cut(s)	348
RsaI	GTAC	3 cut(s)	188, 503, 984
RsaNI	GTAC	3 cut(s)	187, 502, 983
SaqAI	TTAA	4 cut(s)	339, 602, 723, 749
SatI	GCNGC	1 cut(s)	577
Sau3AI	GATC	2 cut(s)	852, 881
Sau96I	GGNCC	1 cut(s)	974
ScaI	AGTACT	1 cut(s)	984
SchI	GAGTC	2 cut(s)	70, 142
SfaNI	GCATC	1 cut(s)	43
SfcI	CTRYAG	2 cut(s)	8, 247
SinI	GGWCC	1 cut(s)	974
SmlI	CTYRAG	1 cut(s)	447
SmoI	CTYRAG	1 cut(s)	447
Sse9I	AATT	9 cut(s)	34, 168, 395, 408, 505, 660, 756, 933, 1005
SspMI	CTAG	3 cut(s)	63, 221, 986
StyI	CCWWGG	4 cut(s)	62, 534, 669, 805
TaaI	ACNGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	441
TasI	AATT	9 cut(s)	34, 168, 395, 408, 505, 660, 756, 933, 1005
TatI	WGTACW	1 cut(s)	982
TfiI	GAWTC	3 cut(s)	280, 438, 968
Tru1I	TTAA	4 cut(s)	339, 602, 723, 749
Tru9I	TTAA	4 cut(s)	339, 602, 723, 749
TscAI	CASTG	7 cut(s)	55, 256, 262, 295, 474, 522, 577
TseFI	GTSAC	2 cut(s)	251, 928
TseI	GCWGC	1 cut(s)	576
Tsp45I	GTSAC	2 cut(s)	251, 928
TspDTI	ATGAA	8 cut(s)	47, 77, 161, 336, 357, 417, 501, 579
TspRI	CASTG	7 cut(s)	55, 256, 262, 295, 474, 522, 577
VpaK11BI	GGWCC	1 cut(s)	974
VspI	ATTAAT	2 cut(s)	339, 749
XapI	RAATTY	4 cut(s)	34, 168, 756, 1005
XmaJI	CCTAGG	1 cut(s)	62
XspI	CTAG	3 cut(s)	63, 221, 986
ZrmI	AGTACT	1 cut(s)	984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.