Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0009417

Physical Location & Seq

Genomic Coordinates Forward (+)

64739533 .. 64742050

Gene Structure 2518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG397700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAAAAGAATGATTCTAATTCTATTTGTTTTCTTGTGCAGAAATATAGGCTAGGGAAAAGCCAACAATCAGAAAACTGCAGTGACAGTTTGCAAGAAGATTACAAAGAGATTCAGAGCAGTGATGGCCATTTCTGCACAGATATCAATGATGAAACTCACAGCCGGATAAATGAAAGCGCCCAGATAGCTCAGTCTCTCCGATTGCAAATGGAAGTGCAGAGGAAACTACATGAGCAAATCGAGGTGCAGAGACATCTTCAGTTACGAATCGAAGCTCAAGGGAAGTATTTACAATCAGTACTAAAGAAAGCACAGGAAACTCTTTCTGGGTATAATTCTTCATCAGTGGGTGTAGAACTTGCAAAGGCTGAAATCTCTCAGTTAGTTTCAATGGTCAACAATGGCTGCCCCAGTTCTTCATTCTCAGAGTTGACAGAAACAGGAACTCCAACCCTAAAAGACATTGAAAGGAAGCAAATTAGAGGCACAATTTGTTCAATGGAAAGTTCCCTCACATCTTCTGAAAGCTCAGGGAGAAAGGAAGAAAAGTCTAATACAACCTGTGTAGAACTACCATTAATGGAAATTCACCCAGAAGTGAAGTCATTGAATAATGTTACAAGCAACAATCAAAATCACGGGATTGGGAGGAAGAGAAGTATAAGCAGTTCCATTTCTGATGGGATGTGTGTCGAGCAACCAGTTGCTAAAAGATCATCAGCAACACACAGAGATAAAAGTGGCAACCATCTGAGATTTGTCACAATTGATTTGAATAGCAAGTATCAGAATGACATTGATTCTGGTTCAAAAGTACTAGACTTGAATTCCAAGGGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

281

Amino Acids

31.27

Weight (kDa)

6.27

Isoelectric Point (pI)

54.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_CC_LHEQLE	PF14379	62 - 108	7.2e-22	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69580 AT1G69580
fragaria_vesca	FvH4_4g31230 FvH4_4g31230 FvH4_4g31230 FvH4_4g31230
malus_domestica	MD13G1070900.v1.1 MD16G1071600.v1.1
prunus_persica	Prupe.1G275900_v2.0.a1
pyrus_communis	pycom13g06350 pycom16g06190
rosa_chinensis	RchiOBHm_Chr4g0439621
rosa_laevigata	RLG00000006253
rosa_multiflora	Rmu_sc0002549.1_g000009
rosa_roxburghii	Rroxscaffold_5G00380550
rosa_rugosa	Rorug04G0320200 Rorug04G0320300
rosa_samantha	Rh4AG371300 Rh4BG383100 Rh4CG397700 Rh4DG377900
rosa_wichuraiana	Rw4G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	3 cut(s)	588, 829, 840
AcuI	CTGAAG	1 cut(s)	245
AfaI	GTAC	2 cut(s)	303, 819
AgsI	TTSAA	7 cut(s)	393, 470, 501, 613, 778, 813, 829
AluBI	AGCT	3 cut(s)	191, 278, 531
AluI	AGCT	3 cut(s)	191, 278, 531
Alw26I	GTCTC	2 cut(s)	201, 247
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	408
ApoI	RAATTY	3 cut(s)	588, 829, 840
AseI	ATTAAT	1 cut(s)	581
AspLEI	GCGC	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	584
BalI	TGGCCA	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	395
BccI	CCATC	3 cut(s)	119, 677, 759
BcoDI	GTCTC	2 cut(s)	201, 247
BfaI	CTAG	2 cut(s)	53, 821
BfmI	CTRYAG	1 cut(s)	79
BfoI	RGCGCY	1 cut(s)	183
BisI	GCNGC	1 cut(s)	409
BlsI	GCNGC	1 cut(s)	410
BmcAI	AGTACT	2 cut(s)	303, 819
BmrI	ACTGGG	1 cut(s)	408
BmuI	ACTGGG	1 cut(s)	408
Bpu10I	CCTNAGC	1 cut(s)	532
BpuEI	CTTGAG	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	834
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bse1I	ACTGG	2 cut(s)	414, 704
BseDI	CCNNGG	1 cut(s)	834
BseGI	GGATG	1 cut(s)	693
BseMII	CTCAG	5 cut(s)	206, 395, 441, 546, 746
BseNI	ACTGG	2 cut(s)	414, 704
BseXI	GCAGC	1 cut(s)	395
BsgI	GTGCAG	4 cut(s)	59, 121, 239, 269
BshFI	GGCC	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	166
BsmAI	GTCTC	2 cut(s)	201, 247
BsnI	GGCC	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	716
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	5 cut(s)	205, 394, 440, 545, 747
BspMAI	CTGCAG	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	414, 704
BssECI	CCNNGG	1 cut(s)	834
BssMI	GATC	1 cut(s)	716
BssT1I	CCWWGG	1 cut(s)	834
Bst4CI	ACNGT	1 cut(s)	89
Bst6I	CTCTTC	1 cut(s)	650
BstDEI	CTNAG	5 cut(s)	192, 381, 427, 532, 755
BstF5I	GGATG	1 cut(s)	693
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	1 cut(s)	719
BstMAI	GTCTC	2 cut(s)	201, 247
BstMBI	GATC	1 cut(s)	716
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 135, 188
BstSFI	CTRYAG	1 cut(s)	79
BstV1I	GCAGC	1 cut(s)	395
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	693
BtsI	GCAGTG	2 cut(s)	88, 127
BtsIMutI	CAGTG	3 cut(s)	88, 127, 354
CfoI	GCGC	1 cut(s)	182
Csp6I	GTAC	2 cut(s)	302, 818
CviAII	CATG	1 cut(s)	233
CviJI	RGCY	9 cut(s)	52, 63, 129, 165, 191, 278, 371, 408, 531
CviKI_1	RGCY	9 cut(s)	52, 63, 129, 165, 191, 278, 371, 408, 531
CviQI	GTAC	2 cut(s)	302, 818
DdeI	CTNAG	5 cut(s)	192, 381, 427, 532, 755
DpnI	GATC	1 cut(s)	718
DpnII	GATC	1 cut(s)	716
EaeI	YGGCCR	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	650
EarI	CTCTTC	1 cut(s)	650
Eco130I	CCWWGG	1 cut(s)	834
Eco32I	GATATC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	245
EcoRI	GAATTC	1 cut(s)	829
EcoRV	GATATC	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	834
ErhI	CCWWGG	1 cut(s)	834
FaeI	CATG	1 cut(s)	236
FaiI	YATR	4 cut(s)	48, 234, 336, 665
FatI	CATG	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	409
FokI	GGATG	1 cut(s)	700
Fsp4HI	GCNGC	1 cut(s)	409
FspBI	CTAG	2 cut(s)	53, 821
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	1 cut(s)	409
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	1 cut(s)	166
HhaI	GCGC	1 cut(s)	182
Hin1II	CATG	1 cut(s)	236
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HincII	GTYRAC	2 cut(s)	400, 435
HindII	GTYRAC	2 cut(s)	400, 435
HinfI	GANTC	4 cut(s)	14, 112, 270, 803
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	1 cut(s)	584
Hpy166II	GTNNAC	2 cut(s)	400, 435
Hpy188I	TCNGA	8 cut(s)	73, 117, 203, 430, 526, 682, 756, 792
Hpy8I	GTNNAC	2 cut(s)	400, 435
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4V	TGCA	8 cut(s)	40, 81, 94, 138, 208, 220, 250, 365
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 135, 188
HpyF3I	CTNAG	5 cut(s)	192, 381, 427, 532, 755
Hsp92II	CATG	1 cut(s)	236
HspAI	GCGC	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	716
Lsp1109I	GCAGC	1 cut(s)	395
MaeI	CTAG	2 cut(s)	53, 821
MaeIII	GTNAC	4 cut(s)	83, 264, 619, 763
MalI	GATC	1 cut(s)	718
MboI	GATC	1 cut(s)	716
MboII	GAAGA	7 cut(s)	110, 251, 333, 411, 513, 557, 667
MfeI	CAATTG	1 cut(s)	768
MlsI	TGGCCA	1 cut(s)	129
MluCI	AATT	8 cut(s)	19, 337, 480, 492, 588, 768, 829, 840
MluNI	TGGCCA	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	476
MnlI	CCTC	5 cut(s)	216, 238, 479, 524, 645
Mox20I	TGGCCA	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	129
MseI	TTAA	2 cut(s)	581, 844
Msp20I	TGGCCA	1 cut(s)	129
MspI	CCGG	1 cut(s)	166
MunI	CAATTG	1 cut(s)	768
MwoI	GCNNNNNNNGC	3 cut(s)	126, 135, 188
NdeII	GATC	1 cut(s)	716
NlaIII	CATG	1 cut(s)	236
NmuCI	GTSAC	2 cut(s)	83, 763
PfeI	GAWTC	4 cut(s)	14, 112, 270, 803
PkrI	GCNGC	1 cut(s)	410
PshBI	ATTAAT	1 cut(s)	581
PsrI	GAACNNNNNNTAC	2 cut(s)	655, 687
PstI	CTGCAG	1 cut(s)	83
RsaI	GTAC	2 cut(s)	303, 819
RsaNI	GTAC	2 cut(s)	302, 818
SaqAI	TTAA	2 cut(s)	581, 844
SatI	GCNGC	1 cut(s)	409
Sau3AI	GATC	1 cut(s)	716
ScaI	AGTACT	2 cut(s)	303, 819
SetI	ASST	5 cut(s)	193, 249, 280, 533, 566
SfcI	CTRYAG	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	279
SmoI	CTYRAG	1 cut(s)	279
Sse9I	AATT	8 cut(s)	19, 337, 480, 492, 588, 768, 829, 840
SspMI	CTAG	2 cut(s)	53, 821
StyI	CCWWGG	1 cut(s)	834
TaaI	ACNGT	1 cut(s)	89
TaqI	TCGA	3 cut(s)	243, 273, 696
TasI	AATT	8 cut(s)	19, 337, 480, 492, 588, 768, 829, 840
TatI	WGTACW	2 cut(s)	301, 817
TfiI	GAWTC	4 cut(s)	14, 112, 270, 803
Tru1I	TTAA	2 cut(s)	581, 844
Tru9I	TTAA	2 cut(s)	581, 844
TscAI	CASTG	3 cut(s)	88, 127, 354
TseFI	GTSAC	2 cut(s)	83, 763
TseI	GCWGC	1 cut(s)	408
Tsp45I	GTSAC	2 cut(s)	83, 763
TspDTI	ATGAA	4 cut(s)	168, 189, 333, 411
TspRI	CASTG	3 cut(s)	88, 127, 354
VspI	ATTAAT	1 cut(s)	581
XapI	RAATTY	3 cut(s)	588, 829, 840
XspI	CTAG	2 cut(s)	53, 821
ZrmI	AGTACT	2 cut(s)	303, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.