Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009417

Physical Location & Seq

Genomic Coordinates Forward (+)

4131419 .. 4133047

Gene Structure 1629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06350.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGTTCATCAGAATATGCAAAACCAGAATATGAATTTGGTTTTATCCACCGACGCGAAGCCGCGGCTGAAGTGGACTCCAGAGCTTCATCAGCGATTCGTCGAGGCTGTCAGTCAGCTTGGAGGGGCAGATAAGGCCACACCAAAGAGTTTGATGAGGATGATGGGAATTCATGGACTCACTTTGTACCACCTAAAGAGCCACTTACAGAAATACAGGCTAGGGAAAAGCCAACAGTCCGAGAACTCCGCTGACATCAAGCAAGAAGATTGCAAGGAGATTCAGAGCAGTGATGGTCATTTCGGCGCGGATATCAGCGATGAAGATCACAGTCAGATTAATGAAAGCTTGCAGATAGCTCAGTCTCTCCAATTGCAAATGGAAGTGCAGAGGAAACTTCATGAACAAATTGAGGTGCAGAGACATCTTCAGCTGAGAATTGAAGCTCAAGGGAAGTATTTGCAGTCGGTATTGAAGAAAGCGCAAGAAACTCTTTCAGGGTATAGTTCTTCTTCAGTGGGAGTAGAACTTGCAAAGGCTGAACTCACCCAGCTAGTTTCAATGGTTAGCAATGGATGTCCGAGTTCTTCGTTATCAGAGTTAACAGCAACAGGAACTTCAACCCTAAAAGACGTGGAGCGGAAGCAAATGAGAGGCTCAATGGACAGTTCCTTGACATCTTCCGAAAGTTCAGGAAGGAAGGAGGAGAAGCTCCCTGAAAATTCTAATGCAACCTGTGTTGAACTACCATTAATGGCCACCCACCCGGACAATAAGGCATGGAACAATTCAGCAAGCAATCATGTTTTCGGGAGAAAGAGAAGCAGCATTCCGATTTCTGACGGTGTATCTGTAAAGCAACCAGTTGCTAAAAGAACACAAACACAAAGAGATAAAGGTGGAAACCATCTGAGAAAGTCTGGATTTTTGGCTACTATTGATCTGAATAGCAAATATCAGGGTGACAACATTGATTCGGGACCGAAAGTAATAGACTTGAACTGCAAGGGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

339

Amino Acids

37.38

Weight (kDa)

8.73

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69580 AT1G69580
fragaria_vesca	FvH4_4g31230 FvH4_4g31230 FvH4_4g31230 FvH4_4g31230
malus_domestica	MD13G1070900.v1.1 MD16G1071600.v1.1
prunus_persica	Prupe.1G275900_v2.0.a1
pyrus_communis	pycom13g06350 pycom16g06190
rosa_chinensis	RchiOBHm_Chr4g0439621
rosa_laevigata	RLG00000006253
rosa_multiflora	Rmu_sc0002549.1_g000009
rosa_roxburghii	Rroxscaffold_5G00380550
rosa_rugosa	Rorug04G0320200 Rorug04G0320300
rosa_samantha	Rh4AG371300 Rh4BG383100 Rh4CG397700 Rh4DG377900
rosa_wichuraiana	Rw4G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	640
AccII	CGCG	3 cut(s)	56, 64, 308
AciI	CCGC	5 cut(s)	62, 64, 249, 308, 640
AcoI	YGGCCR	1 cut(s)	756
AcsI	RAATTY	3 cut(s)	34, 168, 721
AcuI	CTGAAG	3 cut(s)	89, 413, 498
AfaI	GTAC	1 cut(s)	188
AgsI	TTSAA	6 cut(s)	443, 475, 561, 621, 743, 1000
AjiI	CACGTC	1 cut(s)	634
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	8 cut(s)	85, 118, 348, 359, 433, 446, 553, 712
AluI	AGCT	8 cut(s)	85, 118, 348, 359, 433, 446, 553, 712
Alw26I	GTCTC	2 cut(s)	369, 415
AoxI	GGCC	2 cut(s)	135, 756
ApeKI	GCWGC	1 cut(s)	825
ApoI	RAATTY	3 cut(s)	34, 168, 721
AseI	ATTAAT	2 cut(s)	339, 752
AspLEI	GCGC	2 cut(s)	308, 484
AspS9I	GGNCC	1 cut(s)	980
AsuC2I	CCSGG	1 cut(s)	767
AsuHPI	GGTGA	2 cut(s)	538, 974
AvaII	GGWCC	1 cut(s)	980
BalI	TGGCCA	1 cut(s)	758
BbvI	GCAGC	1 cut(s)	837
BccI	CCATC	3 cut(s)	157, 287, 915
BcnI	CCSGG	1 cut(s)	767
BcoDI	GTCTC	2 cut(s)	369, 415
BfaI	CTAG	2 cut(s)	221, 554
BisI	GCNGC	3 cut(s)	62, 65, 826
BlsI	GCNGC	3 cut(s)	63, 66, 827
Bme1390I	CCNGG	1 cut(s)	767
Bme18I	GGWCC	1 cut(s)	980
BmgBI	CACGTC	1 cut(s)	634
BmgT120I	GGNCC	1 cut(s)	980
BmiI	GGNNCC	1 cut(s)	981
BmrFI	CCNGG	1 cut(s)	767
BpmI	CTGGAG	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	432
BpuMI	CCSGG	1 cut(s)	767
BsaBI	GATNNNNATC	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	863
Bse3DI	GCAATG	1 cut(s)	577
Bse8I	GATNNNNATC	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	62
BseGI	GGATG	2 cut(s)	165, 581
BseJI	GATNNNNATC	1 cut(s)	324
BseMI	GCAATG	1 cut(s)	577
BseMII	CTCAG	3 cut(s)	374, 425, 902
BseNI	ACTGG	1 cut(s)	863
BseRI	GAGGAG	1 cut(s)	719
BseXI	GCAGC	1 cut(s)	837
BseYI	CCCAGC	1 cut(s)	549
BsgI	GTGCAG	2 cut(s)	407, 437
Bsh1236I	CGCG	3 cut(s)	56, 64, 308
BshFI	GGCC	2 cut(s)	137, 758
BsiSI	CCGG	1 cut(s)	767
BslFI	GGGAC	1 cut(s)	993
BsmAI	GTCTC	2 cut(s)	369, 415
BsmFI	GGGAC	1 cut(s)	993
BsmI	GAATGC	1 cut(s)	828
BsnI	GGCC	2 cut(s)	137, 758
Bsp143I	GATC	2 cut(s)	325, 940
BspACI	CCGC	5 cut(s)	62, 64, 249, 308, 640
BspANI	GGCC	2 cut(s)	137, 758
BspCNI	CTCAG	3 cut(s)	373, 426, 903
BspFNI	CGCG	3 cut(s)	56, 64, 308
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	1 cut(s)	981
BsrBI	CCGCTC	1 cut(s)	640
BsrDI	GCAATG	1 cut(s)	577
BsrI	ACTGG	1 cut(s)	863
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	2 cut(s)	325, 940
Bst4CI	ACNGT	4 cut(s)	237, 332, 668, 845
BstC8I	GCNNGC	2 cut(s)	350, 796
BstDEI	CTNAG	3 cut(s)	360, 434, 911
BstDSI	CCRYGG	1 cut(s)	62
BstF5I	GGATG	2 cut(s)	165, 581
BstFNI	CGCG	3 cut(s)	56, 64, 308
BstHHI	GCGC	2 cut(s)	308, 484
BstKTI	GATC	2 cut(s)	328, 943
BstMAI	GTCTC	2 cut(s)	369, 415
BstMBI	GATC	2 cut(s)	325, 940
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 134
BstSCI	CCNGG	1 cut(s)	765
BstUI	CGCG	3 cut(s)	56, 64, 308
BstV1I	GCAGC	1 cut(s)	837
BsuRI	GGCC	2 cut(s)	137, 758
BtgI	CCRYGG	1 cut(s)	62
BtgZI	GCGATG	1 cut(s)	333
BtrI	CACGTC	1 cut(s)	634
BtsCI	GGATG	2 cut(s)	165, 581
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	295, 522
Cac8I	GCNNGC	2 cut(s)	350, 796
CciI	TCATGA	1 cut(s)	400
CfoI	GCGC	2 cut(s)	308, 484
Cfr13I	GGNCC	1 cut(s)	980
Cfr42I	CCGCGG	1 cut(s)	65
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	4 cut(s)	173, 401, 780, 803
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	3 cut(s)	360, 434, 911
DpnI	GATC	2 cut(s)	327, 942
DpnII	GATC	2 cut(s)	325, 940
EaeI	YGGCCR	1 cut(s)	756
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	980
Eco57I	CTGAAG	3 cut(s)	89, 413, 498
EcoRI	GAATTC	1 cut(s)	168
EcoRV	GATATC	1 cut(s)	313
FaeI	CATG	4 cut(s)	176, 404, 783, 806
FaiI	YATR	7 cut(s)	17, 32, 174, 402, 504, 781, 804
FalI	AAGNNNNNCTT	4 cut(s)	188, 220, 477, 509
FaqI	GGGAC	1 cut(s)	993
FatI	CATG	4 cut(s)	172, 400, 779, 802
Fnu4HI	GCNGC	3 cut(s)	62, 65, 826
FokI	GGATG	2 cut(s)	172, 588
Fsp4HI	GCNGC	3 cut(s)	62, 65, 826
FspBI	CTAG	2 cut(s)	221, 554
GlaI	GCGC	2 cut(s)	307, 483
GluI	GCNGC	3 cut(s)	62, 65, 826
GsaI	CCCAGC	1 cut(s)	553
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	2 cut(s)	137, 758
HapII	CCGG	1 cut(s)	767
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	2 cut(s)	308, 484
Hin1II	CATG	4 cut(s)	176, 404, 783, 806
Hin6I	GCGC	2 cut(s)	306, 482
HinP1I	GCGC	2 cut(s)	306, 482
HincII	GTYRAC	1 cut(s)	603
HindII	GTYRAC	1 cut(s)	603
HindIII	AAGCTT	1 cut(s)	346
HinfI	GANTC	6 cut(s)	76, 96, 177, 280, 974, 1011
HpaI	GTTAAC	1 cut(s)	603
HpaII	CCGG	1 cut(s)	767
HphI	GGTGA	2 cut(s)	538, 974
Hpy166II	GTNNAC	2 cut(s)	75, 603
Hpy188III	TCNNGA	6 cut(s)	80, 401, 693, 811, 921, 978
Hpy8I	GTNNAC	2 cut(s)	75, 603
Hpy99I	CGWCG	2 cut(s)	56, 104
HpyAV	CCTTC	2 cut(s)	690, 694
HpyCH4III	ACNGT	4 cut(s)	237, 332, 668, 845
HpyCH4IV	ACGT	1 cut(s)	633
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 134
HpyF3I	CTNAG	3 cut(s)	360, 434, 911
HpySE526I	ACGT	1 cut(s)	633
Hsp92II	CATG	4 cut(s)	176, 404, 783, 806
HspAI	GCGC	2 cut(s)	306, 482
KspAI	GTTAAC	1 cut(s)	603
KspI	CCGCGG	1 cut(s)	65
Kzo9I	GATC	2 cut(s)	325, 940
LmnI	GCTCC	2 cut(s)	637, 717
Lsp1109I	GCAGC	1 cut(s)	837
MaeI	CTAG	2 cut(s)	221, 554
MaeII	ACGT	1 cut(s)	633
MaeIII	GTNAC	1 cut(s)	962
MalI	GATC	2 cut(s)	327, 942
MbiI	CCGCTC	1 cut(s)	640
MboI	GATC	2 cut(s)	325, 940
MboII	GAAGA	8 cut(s)	278, 335, 419, 487, 501, 504, 579, 672
MfeI	CAATTG	1 cut(s)	371
MlsI	TGGCCA	1 cut(s)	758
MluCI	AATT	7 cut(s)	34, 168, 371, 408, 438, 721, 787
MluNI	TGGCCA	1 cut(s)	758
MlyI	GAGTC	2 cut(s)	70, 171
MnlI	CCTC	7 cut(s)	97, 116, 150, 384, 406, 647, 697
Mox20I	TGGCCA	1 cut(s)	758
MscI	TGGCCA	1 cut(s)	758
MseI	TTAA	3 cut(s)	339, 602, 752
Msp20I	TGGCCA	1 cut(s)	758
MspA1I	CMGCKG	3 cut(s)	64, 251, 433
MspI	CCGG	1 cut(s)	767
MspR9I	CCNGG	1 cut(s)	767
MunI	CAATTG	1 cut(s)	371
Mva1269I	GAATGC	1 cut(s)	828
MvnI	CGCG	3 cut(s)	56, 64, 308
MwoI	GCNNNNNNNGC	2 cut(s)	91, 134
NciI	CCSGG	1 cut(s)	767
NdeII	GATC	2 cut(s)	325, 940
NlaIII	CATG	4 cut(s)	176, 404, 783, 806
NlaIV	GGNNCC	1 cut(s)	981
NmuCI	GTSAC	1 cut(s)	962
PagI	TCATGA	1 cut(s)	400
PctI	GAATGC	1 cut(s)	828
PfeI	GAWTC	4 cut(s)	96, 280, 974, 1011
PkrI	GCNGC	3 cut(s)	63, 66, 827
PleI	GAGTC	2 cut(s)	70, 171
PpsI	GAGTC	2 cut(s)	70, 171
PshBI	ATTAAT	2 cut(s)	339, 752
PspFI	CCCAGC	1 cut(s)	549
PspN4I	GGNNCC	1 cut(s)	981
PspPI	GGNCC	1 cut(s)	980
PvuII	CAGCTG	1 cut(s)	433
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SacII	CCGCGG	1 cut(s)	65
SaqAI	TTAA	3 cut(s)	339, 602, 752
SatI	GCNGC	3 cut(s)	62, 65, 826
Sau3AI	GATC	2 cut(s)	325, 940
Sau96I	GGNCC	1 cut(s)	980
SchI	GAGTC	2 cut(s)	70, 171
ScrFI	CCNGG	1 cut(s)	767
Sfr303I	CCGCGG	1 cut(s)	65
SgrBI	CCGCGG	1 cut(s)	65
SinI	GGWCC	1 cut(s)	980
SmlI	CTYRAG	1 cut(s)	447
SmoI	CTYRAG	1 cut(s)	447
Sse9I	AATT	7 cut(s)	34, 168, 371, 408, 438, 721, 787
SsiI	CCGC	5 cut(s)	62, 64, 249, 308, 640
SspMI	CTAG	2 cut(s)	221, 554
StyD4I	CCNGG	1 cut(s)	765
TaaI	ACNGT	4 cut(s)	237, 332, 668, 845
TaiI	ACGT	1 cut(s)	636
TaqI	TCGA	1 cut(s)	102
TaqII	GACCGA	1 cut(s)	997
TasI	AATT	7 cut(s)	34, 168, 371, 408, 438, 721, 787
TauI	GCSGC	2 cut(s)	64, 67
TfiI	GAWTC	4 cut(s)	96, 280, 974, 1011
Tru1I	TTAA	3 cut(s)	339, 602, 752
Tru9I	TTAA	3 cut(s)	339, 602, 752
TscAI	CASTG	2 cut(s)	295, 522
TseFI	GTSAC	1 cut(s)	962
TseI	GCWGC	1 cut(s)	825
Tsp45I	GTSAC	1 cut(s)	962
TspDTI	ATGAA	7 cut(s)	47, 77, 161, 336, 357, 389, 417
TspRI	CASTG	2 cut(s)	295, 522
VpaK11BI	GGWCC	1 cut(s)	980
VspI	ATTAAT	2 cut(s)	339, 752
XapI	RAATTY	3 cut(s)	34, 168, 721
XspI	CTAG	2 cut(s)	221, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.